Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PMZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 S5 S S5 N N N 0 -1.428 0.339 -3.128
2 N1 N N1 N N N 0 0.433 0.459 -0.699
3 C1 C C1 N Y N 0 -1.306 0.136 0.903
4 C2 C C2 N Y N 0 -2.655 -0.063 1.226
5 C3 C C3 N Y N 0 -3.607 -0.139 0.202
6 C4 C C4 N Y N 0 -3.215 -0.015 -1.108
7 C5 C C5 N Y N 0 -1.871 0.186 -1.433
8 C6 C C6 N Y N 0 -0.917 0.255 -0.417
9 C7 C C7 N Y N 0 0.292 -0.013 -3.079
10 C8 C C8 N Y N 0 0.931 -0.396 -4.255
11 C9 C C9 N Y N 0 2.282 -0.684 -4.256
12 C10 C C10 N Y N 0 3.009 -0.594 -3.083
13 C11 C C11 N Y N 0 2.384 -0.215 -1.911
14 C12 C C12 N Y N 0 1.025 0.078 -1.902
15 CA1 C CA1 N N N 0 1.271 1.097 0.319
16 CB1 C CB1 N N N 0 1.868 0.026 1.233
17 CG C CG N N N 0 2.742 0.693 2.297
18 ND N ND N N N 0 3.315 -0.335 3.175
19 CE1 C CE1 N N N 0 4.139 0.367 4.168
20 CE2 C CE2 N N N 0 2.194 -0.937 3.908
21 CA2 C CA2 N N N 0 -3.066 -0.193 2.628
22 CB2 C CB2 N N N 0 -4.518 -0.408 2.97
23 OB3 O OB3 N N N 0 -2.238 -0.127 3.512
24 H1 H H1 N N N 0 -0.567 0.194 1.689
25 H3 H H3 N N N 0 -4.649 -0.294 0.442
26 H4 H H4 N N N 0 -3.952 -0.074 -1.894
27 H8 H H8 N N N 0 0.367 -0.468 -5.174
28 H9 H H9 N N N 0 2.771 -0.978 -5.173
29 H10 H H10 N N N 0 4.065 -0.821 -3.084
30 H11 H H11 N N N 0 2.954 -0.147 -0.996
31 HA11 H 1HA1 N N N 0 0.664 1.783 0.91
32 HA12 H 2HA1 N N N 0 2.075 1.65 -0.166
33 HB11 H 1HB1 N N N 0 2.474 -0.659 0.642
34 HB12 H 2HB1 N N N 0 1.063 -0.526 1.719
35 HG1 H HG1 N N N 0 2.136 1.379 2.888
36 HG2 H HG2 N N N 0 3.547 1.245 1.812
37 HE11 H 1HE1 N N N 0 4.589 -0.357 4.846
38 HE12 H 2HE1 N N N 0 4.926 0.924 3.658
39 HE13 H 3HE1 N N N 0 3.515 1.057 4.735
40 HE21 H 1HE2 N N N 0 1.55 -1.473 3.211
41 HE22 H 2HE2 N N N 0 2.578 -1.632 4.655
42 HE23 H 3HE2 N N N 0 1.62 -0.153 4.403
43 HB23 H 3HB2 N N N 0 -4.868 -1.33 2.506
44 HB21 H 1HB2 N N N 0 -4.63 -0.48 4.052
45 HB22 H 2HB2 N N N 0 -5.107 0.43 2.599