Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : PME    

Bonds between two atoms of the molecule

Total Number of Bonds: 39


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C sing 1.47 N N
2 N1 HN11 N H sing 1.01 N N
3 N1 HN12 N H sing 1.01 N N
4 C2 C3 C C sing 1.53 N N
5 C2 C7 C C sing 1.51 N N
6 C2 H2 C H sing 1.09 N N
7 C3 C4 C C sing 1.51 N N
8 C3 H31 C H sing 1.09 N N
9 C3 H32 C H sing 1.09 N N
10 C4 O5 C O doub 1.21 N N
11 C4 O6 C O sing 1.34 N N
12 O6 HO6 O H sing 0.97 N N
13 C7 O8 C O doub 1.21 N N
14 C7 N9 C N sing 1.35 N N
15 N9 C10 N C sing 1.46 N N
16 N9 HN9 N H sing 0.97 N N
17 C10 C11 C C sing 1.53 N N
18 C10 C18 C C sing 1.51 N N
19 C10 H10 C H sing 1.09 N N
20 C11 C12 C C sing 1.51 N N
21 C11 H111 C H sing 1.09 N N
22 C11 H112 C H sing 1.09 N N
23 C12 C13 C C doub 1.38 N Y
24 C12 C17 C C sing 1.38 N Y
25 C13 C14 C C sing 1.38 N Y
26 C13 H13 C H sing 1.08 N N
27 C14 C15 C C doub 1.38 N Y
28 C14 H14 C H sing 1.08 N N
29 C15 C16 C C sing 1.38 N Y
30 C15 H15 C H sing 1.08 N N
31 C16 C17 C C doub 1.38 N Y
32 C16 H16 C H sing 1.08 N N
33 C17 H17 C H sing 1.08 N N
34 C18 O19 C O doub 1.21 N N
35 C18 O20 C O sing 1.34 N N
36 O20 C21 O C sing 1.45 N N
37 C21 H211 C H sing 1.09 N N
38 C21 H212 C H sing 1.09 N N
39 C21 H213 C H sing 1.09 N N