Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PME

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -1.874 1.517 -2.222
2 C2 C C2 S N N 0 -1.005 0.39 -1.858
3 C3 C C3 N N N 0 -0.171 -0.023 -3.072
4 C4 C C4 N N N 0 -1.088 -0.438 -4.193
5 O5 O O5 N N N 0 -2.286 -0.406 -4.037
6 N9 N N9 N N N 0 0.343 -0.108 0.154
7 O6 O O6 N N N 0 -0.575 -0.843 -5.365
8 C7 C C7 N N N 0 -0.087 0.806 -0.736
9 O8 O O8 N N N 0 0.262 1.963 -0.636
10 C10 C C10 S N N 0 1.235 0.295 1.244
11 C11 C C11 N N N 0 0.997 -0.604 2.458
12 C12 C C12 N Y N 0 -0.435 -0.473 2.906
13 C13 C C13 N Y N 0 -1.402 -1.312 2.385
14 C14 C C14 N Y N 0 -2.717 -1.192 2.796
15 C15 C C15 N Y N 0 -3.064 -0.233 3.729
16 C16 C C16 N Y N 0 -2.097 0.604 4.252
17 C17 C C17 N Y N 0 -0.782 0.481 3.844
18 C18 C C18 N N N 0 2.668 0.164 0.795
19 O19 O O19 N N N 0 3.513 0.897 1.251
20 O20 O O20 N N N 0 3.005 -0.766 -0.11
21 C21 C C21 N N N 0 4.386 -0.892 -0.542
22 HN11 H 1HN1 N N N 0 -2.394 1.23 -3.038
23 HN12 H 2HN1 N N N 0 -1.268 2.269 -2.514
24 H2 H H2 N N N 0 -1.617 -0.45 -1.533
25 H31 H 1H3 N N N 0 0.441 0.818 -3.396
26 H32 H 2H3 N N N 0 0.473 -0.859 -2.802
27 HO6 H HO6 N N N 0 -1.163 -1.11 -6.085
28 HN9 H HN9 N N N 0 0.064 -1.033 0.074
29 H10 H H10 N N N 0 1.032 1.331 1.514
30 H111 H 1H11 N N N 0 1.199 -1.64 2.187
31 H112 H 2H11 N N N 0 1.66 -0.304 3.269
32 H13 H H13 N N N 0 -1.131 -2.061 1.656
33 H14 H H14 N N N 0 -3.472 -1.847 2.388
34 H15 H H15 N N N 0 -4.091 -0.139 4.05
35 H16 H H16 N N N 0 -2.368 1.354 4.981
36 H17 H H17 N N N 0 -0.026 1.136 4.252
37 H211 H 1H21 N N N 0 4.465 -1.696 -1.274
38 H212 H 2H21 N N N 0 4.712 0.044 -0.993
39 H213 H 3H21 N N N 0 5.016 -1.121 0.317