Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PFM    

Bonds between two atoms of the molecule

Total Number of Bonds: 44


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N CA N C sing 1.47 N N
2 N HN1 N H sing 1.01 N N
3 N HN2 N H sing 1.01 N N
4 CA C C C sing 1.51 N N
5 CA CB C C sing 1.53 N N
6 CA HA C H sing 1.09 N N
7 C OA C O doub 1.21 N N
8 C OB C O sing 1.34 N N
9 OB HOB O H sing 0.97 N N
10 CB CG C C sing 1.51 N N
11 CB HB1 C H sing 1.09 N N
12 CB HB2 C H sing 1.09 N N
13 CG CD C C doub 1.34 Z N
14 CG HG C H sing 1.08 N N
15 CD OE C O sing 1.36 N N
16 CD C4B C C sing 1.47 N N
17 OE HOE O H sing 0.97 N N
18 C4B C4A C C doub 1.34 E N
19 C4B H4B C H sing 1.08 N N
20 C4A C4 C C sing 1.47 N N
21 C4A H4A C H sing 1.08 N N
22 C4 C3 C C doub 1.41 N Y
23 C4 C5 C C sing 1.4 N Y
24 C3 O3 C O sing 1.36 N N
25 C3 C2 C C sing 1.38 N Y
26 O3 HO3 O H sing 0.97 N N
27 C2 C2A C C sing 1.51 N N
28 C2 N1 C N doub 1.32 N Y
29 C2A H2A1 C H sing 1.09 N N
30 C2A H2A2 C H sing 1.09 N N
31 C2A H2A3 C H sing 1.09 N N
32 N1 C6 N C sing 1.32 N Y
33 C6 C5 C C doub 1.38 N Y
34 C6 H6 C H sing 1.08 N N
35 C5 C5A C C sing 1.51 N N
36 C5A OP4 C O sing 1.43 N N
37 C5A H5A1 C H sing 1.09 N N
38 C5A H5A2 C H sing 1.09 N N
39 P OP1 P O doub 1.48 N N
40 P OP2 P O sing 1.61 N N
41 P OP3 P O sing 1.61 N N
42 P OP4 P O sing 1.61 N N
43 OP2 HOP2 O H sing 0.97 N N
44 OP3 HOP3 O H sing 0.97 N N