Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : PFM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 -1.305 1.192 -4.312
2 CA C CA S N N 0 -0.237 0.764 -5.226
3 C C C N N N 0 -0.842 0.311 -6.53
4 OA O OA N N N 0 -1.949 -0.173 -6.546
5 OB O OB N N N 0 -0.152 0.448 -7.673
6 CB C CB N N N 0 0.539 -0.393 -4.595
7 CG C CG N N N 0 1.144 0.059 -3.291
8 CD C CD N N N 0 0.899 -0.623 -2.168
9 OE O OE N N N 0 0.195 -1.784 -2.218
10 C4B C C4B N N N 0 1.391 -0.117 -0.879
11 C4A C C4A N N N 0 1.144 -0.804 0.25
12 C4 C C4 N Y N 0 1.637 -0.298 1.541
13 C3 C C3 N Y N 0 3.012 -0.101 1.765
14 O3 O O3 N N N 0 3.917 -0.38 0.791
15 C2 C C2 N Y N 0 3.427 0.372 2.998
16 C2A C C2A N N N 0 4.897 0.583 3.257
17 N1 N N1 N Y N 0 2.552 0.645 3.947
18 C6 C C6 N Y N 0 1.255 0.479 3.775
19 C5 C C5 N Y N 0 0.75 0.007 2.582
20 C5A C C5A N N N 0 -0.734 -0.177 2.4
21 P P P N N N 0 -2.985 -0.018 3.335
22 OP1 O OP1 N N N 0 -3.236 -1.441 3.018
23 OP2 O OP2 N N N 0 -3.813 0.392 4.653
24 OP3 O OP3 N N N 0 -3.455 0.898 2.098
25 OP4 O OP4 N N N 0 -1.412 0.203 3.599
26 HN1 H 1HN N N N 0 -0.867 1.385 -3.424
27 HN2 H 2HN N N N 0 -1.904 0.392 -4.172
28 HA H HA N N N 0 0.439 1.599 -5.409
29 HOB H HOB N N N 0 -0.541 0.157 -8.509
30 HB1 H 1HB N N N 0 1.332 -0.71 -5.273
31 HB2 H 2HB N N N 0 -0.137 -1.227 -4.411
32 HG H HG N N N 0 1.776 0.935 -3.264
33 HOE H HOE N N N 0 0.828 -2.486 -2.422
34 H4B H H4B N N N 0 1.95 0.805 -0.839
35 H4A H H4A N N N 0 0.585 -1.727 0.21
36 HO3 H HO3 N N N 0 4.03 0.429 0.274
37 H2A1 H 1H2A N N N 0 5.328 -0.329 3.668
38 H2A2 H 2H2A N N N 0 5.398 0.833 2.322
39 H2A3 H 3H2A N N N 0 5.026 1.398 3.968
40 H6 H H6 N N N 0 0.577 0.717 4.582
41 H5A1 H 1H5A N N N 0 -1.079 0.445 1.575
42 H5A2 H 2H5A N N N 0 -0.946 -1.223 2.179
43 HOP2 H 2HOP N N N 0 -4.748 0.245 4.452
44 HOP3 H 3HOP N N N 0 -3.274 1.815 2.344