Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PED    

Bonds between two atoms of the molecule

Total Number of Bonds: 24


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O1P P O doub 1.48 N N
2 P O2P P O sing 1.61 N N
3 P O3P P O sing 1.61 N N
4 P O5' P O sing 1.61 N N
5 O2P HOP2 O H sing 0.97 N N
6 O3P HOP3 O H sing 0.97 N N
7 O5' C5' O C sing 1.43 N N
8 C2' C3' C C sing 1.53 N N
9 C2' C1' C C sing 1.53 N N
10 C2' H2'1 C H sing 1.09 N N
11 C2' H2'2 C H sing 1.09 N N
12 C5' C4' C C sing 1.53 N N
13 C5' H5'1 C H sing 1.09 N N
14 C5' H5'2 C H sing 1.09 N N
15 C4' O4' C O sing 1.43 N N
16 C4' C3' C C sing 1.53 N N
17 C4' H4'1 C H sing 1.09 N N
18 O4' HO'4 O H sing 0.97 N N
19 C3' O3' C O sing 1.43 N N
20 C3' H3' C H sing 1.09 N N
21 C1' H1'1 C H sing 1.09 N N
22 C1' H1'2 C H sing 1.09 N N
23 C1' H1'3 C H sing 1.09 N N
24 O3' H3T O H sing 0.97 N N