Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : P5S    

Bonds between two atoms of the molecule

Total Number of Bonds: 135


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CA C C C sing 1.51 N N
2 O C O C doub 1.21 N N
3 C OXT C O sing 1.34 N N
4 CA N C N sing 1.47 N N
5 N HN N H sing 1.01 N N
6 N HNA N H sing 1.01 N N
7 O19 C1 O C sing 1.45 N N
8 C1 C2 C C sing 1.53 N N
9 C1 H1 C H sing 1.09 N N
10 C1 H1A C H sing 1.09 N N
11 C2 O37 C O sing 1.45 N N
12 C2 C3 C C sing 1.53 N N
13 C2 H2 C H sing 1.09 N N
14 O16 C3 O C sing 1.43 N N
15 C3 H3 C H sing 1.09 N N
16 C3 H3A C H sing 1.09 N N
17 CB CA C C sing 1.53 N N
18 CA HA C H sing 1.09 N N
19 CB OG C O sing 1.43 N N
20 CB HB C H sing 1.09 N N
21 CB HBA C H sing 1.09 N N
22 P12 OG P O sing 1.61 N N
23 O16 P12 O P sing 1.61 N N
24 O13 P12 O P doub 1.48 N N
25 P12 O15 P O sing 1.61 N N
26 O15 HO15 O H sing 0.97 N N
27 C20 C17 C C sing 1.51 N N
28 O19 C17 O C sing 1.34 N N
29 C17 O18 C O doub 1.21 N N
30 C21 C20 C C sing 1.53 N N
31 C20 H20 C H sing 1.09 N N
32 C20 H20A C H sing 1.09 N N
33 C21 C22 C C sing 1.53 N N
34 C21 H21 C H sing 1.09 N N
35 C21 H21A C H sing 1.09 N N
36 C23 C22 C C sing 1.53 N N
37 C22 H22 C H sing 1.09 N N
38 C22 H22A C H sing 1.09 N N
39 C24 C23 C C sing 1.53 N N
40 C23 H23 C H sing 1.09 N N
41 C23 H23A C H sing 1.09 N N
42 C25 C24 C C sing 1.53 N N
43 C24 H24 C H sing 1.09 N N
44 C24 H24A C H sing 1.09 N N
45 C26 C25 C C sing 1.53 N N
46 C25 H25 C H sing 1.09 N N
47 C25 H25A C H sing 1.09 N N
48 C26 C27 C C sing 1.53 N N
49 C26 H26 C H sing 1.09 N N
50 C26 H26A C H sing 1.09 N N
51 C27 C28 C C sing 1.53 N N
52 C27 H27 C H sing 1.09 N N
53 C27 H27A C H sing 1.09 N N
54 C29 C28 C C sing 1.53 N N
55 C28 H28 C H sing 1.09 N N
56 C28 H28A C H sing 1.09 N N
57 C30 C29 C C sing 1.53 N N
58 C29 H29 C H sing 1.09 N N
59 C29 H29A C H sing 1.09 N N
60 C31 C30 C C sing 1.53 N N
61 C30 H30 C H sing 1.09 N N
62 C30 H30A C H sing 1.09 N N
63 C31 C32 C C sing 1.53 N N
64 C31 H31 C H sing 1.09 N N
65 C31 H31A C H sing 1.09 N N
66 C33 C32 C C sing 1.53 N N
67 C32 H32 C H sing 1.09 N N
68 C32 H32A C H sing 1.09 N N
69 C33 C34 C C sing 1.53 N N
70 C33 H33 C H sing 1.09 N N
71 C33 H33A C H sing 1.09 N N
72 C35 C34 C C sing 1.53 N N
73 C34 H34 C H sing 1.09 N N
74 C34 H34A C H sing 1.09 N N
75 C36 C35 C C sing 1.53 N N
76 C35 H35 C H sing 1.09 N N
77 C35 H35A C H sing 1.09 N N
78 C36 H36 C H sing 1.09 N N
79 C36 H36A C H sing 1.09 N N
80 C36 H36B C H sing 1.09 N N
81 C38 O37 C O sing 1.34 N N
82 O47 C38 O C doub 1.21 N N
83 C38 C39 C C sing 1.51 N N
84 C40 C39 C C sing 1.53 N N
85 C39 H39 C H sing 1.09 N N
86 C39 H39A C H sing 1.09 N N
87 C41 C40 C C sing 1.53 N N
88 C40 H40 C H sing 1.09 N N
89 C40 H40A C H sing 1.09 N N
90 C42 C41 C C sing 1.53 N N
91 C41 H41 C H sing 1.09 N N
92 C41 H41A C H sing 1.09 N N
93 C43 C42 C C sing 1.53 N N
94 C42 H42 C H sing 1.09 N N
95 C42 H42A C H sing 1.09 N N
96 C43 C44 C C sing 1.53 N N
97 C43 H43 C H sing 1.09 N N
98 C43 H43A C H sing 1.09 N N
99 C44 C45 C C sing 1.53 N N
100 C44 H44 C H sing 1.09 N N
101 C44 H44A C H sing 1.09 N N
102 C45 C46 C C sing 1.53 N N
103 C45 H45 C H sing 1.09 N N
104 C45 H45A C H sing 1.09 N N
105 C46 C48 C C sing 1.53 N N
106 C46 H46 C H sing 1.09 N N
107 C46 H46A C H sing 1.09 N N
108 C48 C49 C C sing 1.53 N N
109 C48 H48 C H sing 1.09 N N
110 C48 H48A C H sing 1.09 N N
111 C49 C50 C C sing 1.53 N N
112 C49 H49 C H sing 1.09 N N
113 C49 H49A C H sing 1.09 N N
114 C50 C51 C C sing 1.53 N N
115 C50 H50 C H sing 1.09 N N
116 C50 H50A C H sing 1.09 N N
117 C51 C52 C C sing 1.53 N N
118 C51 H51 C H sing 1.09 N N
119 C51 H51A C H sing 1.09 N N
120 C53 C52 C C sing 1.53 N N
121 C52 H52 C H sing 1.09 N N
122 C52 H52A C H sing 1.09 N N
123 C53 C54 C C sing 1.53 N N
124 C53 H53 C H sing 1.09 N N
125 C53 H53A C H sing 1.09 N N
126 C55 C54 C C sing 1.53 N N
127 C54 H54 C H sing 1.09 N N
128 C54 H54A C H sing 1.09 N N
129 C55 C56 C C sing 1.53 N N
130 C55 H55 C H sing 1.09 N N
131 C55 H55A C H sing 1.09 N N
132 C56 H56 C H sing 1.09 N N
133 C56 H56A C H sing 1.09 N N
134 C56 H56B C H sing 1.09 N N
135 OXT HXT O H sing 0.97 N N