Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : P5S

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 136


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C N N N 0 -3.306 -3.081 4.93
2 N N N N N N 0 -1.788 -1.551 3.807
3 O O O N N N 0 -2.792 -2.731 5.965
4 C1 C C1 N N N 0 -0.184 -3.075 -3.164
5 C2 C C2 R N N 0 1.151 -3.494 -2.546
6 C3 C C3 N N N 0 0.895 -4.459 -1.386
7 CA C CA S N N 0 -2.681 -2.701 3.612
8 CB C CB N N N 0 -1.877 -3.885 3.069
9 OG O OG N N N 0 -1.381 -3.567 1.768
10 P12 P P12 N N N 0 -0.49 -4.586 0.896
11 O13 O O13 N N N 0 0.69 -5.008 1.684
12 O15 O O15 N N N 0 -1.371 -5.878 0.514
13 O16 O O16 N N N 0 0.0 -3.852 -0.451
14 C17 C C17 N N N 0 -2.261 -2.105 -2.512
15 O18 O O18 N N N 0 -2.597 -2.196 -3.669
16 O19 O O19 N N N 0 -1.043 -2.523 -2.132
17 C20 C C20 N N N 0 -3.208 -1.52 -1.495
18 C21 C C21 N N N 0 -4.516 -1.126 -2.185
19 C22 C C22 N N N 0 -5.477 -0.533 -1.153
20 C23 C C23 N N N 0 -6.785 -0.138 -1.842
21 C24 C C24 N N N 0 -7.747 0.454 -0.81
22 C25 C C25 N N N 0 -9.054 0.849 -1.499
23 C26 C C26 N N N 0 -10.016 1.442 -0.467
24 C27 C C27 N N N 0 -11.323 1.837 -1.156
25 C28 C C28 N N N 0 -12.285 2.43 -0.124
26 C29 C C29 N N N 0 -13.593 2.824 -0.813
27 C30 C C30 N N N 0 -14.554 3.417 0.219
28 C31 C C31 N N N 0 -15.862 3.812 -0.471
29 C32 C C32 N N N 0 -16.824 4.405 0.561
30 C33 C C33 N N N 0 -18.131 4.799 -0.128
31 C34 C C34 N N N 0 -19.093 5.392 0.904
32 C35 C C35 N N N 0 -20.401 5.787 0.215
33 C36 C C36 N N N 0 -21.362 6.379 1.247
34 O37 O O37 N N N 0 1.847 -2.319 -2.054
35 C38 C C38 N N N 0 3.189 -2.359 -2.059
36 C39 C C39 N N N 0 3.98 -1.176 -1.563
37 C40 C C40 N N N 0 5.475 -1.479 -1.676
38 C41 C C41 N N N 0 6.278 -0.278 -1.173
39 C42 C C42 N N N 0 7.774 -0.581 -1.285
40 C43 C C43 N N N 0 8.577 0.62 -0.782
41 C44 C C44 N N N 0 10.072 0.317 -0.895
42 C45 C C45 N N N 0 10.875 1.518 -0.391
43 C46 C C46 N N N 0 12.371 1.215 -0.504
44 O47 O O47 N N N 0 3.763 -3.343 -2.462
45 C48 C C48 N N N 0 13.174 2.417 0.0
46 C49 C C49 N N N 0 14.669 2.114 -0.113
47 C50 C C50 N N N 0 15.472 3.315 0.391
48 C51 C C51 N N N 0 16.968 3.012 0.278
49 C52 C C52 N N N 0 17.771 4.213 0.782
50 C53 C C53 N N N 0 19.266 3.91 0.669
51 C54 C C54 N N N 0 20.069 5.111 1.173
52 C55 C C55 N N N 0 21.565 4.808 1.06
53 C56 C C56 N N N 0 22.368 6.009 1.563
54 OXT O OXT N N N 0 -4.431 -3.812 4.953
55 HN H HN N N N 0 -2.305 -0.738 4.104
56 HNA H HNA N N N 0 -1.053 -1.771 4.462
57 H1 H H1 N N N 0 -0.008 -2.321 -3.932
58 H1A H H1A N N N 0 -0.666 -3.944 -3.612
59 H2 H H2 N N N 0 1.762 -3.989 -3.302
60 H3 H H3 N N N 0 0.453 -5.378 -1.769
61 H3A H H3A N N N 0 1.838 -4.688 -0.89
62 HA H HA N N N 0 -3.463 -2.437 2.901
63 HB H HB N N N 0 -1.04 -4.092 3.737
64 HBA H HBA N N N 0 -2.52 -4.763 3.009
65 HO15 H HO15 N N N 0 -2.162 -5.675 -0.004
66 H20 H H20 N N N 0 -3.414 -2.261 -0.723
67 H20A H H20A N N N 0 -2.756 -0.639 -1.042
68 H21 H H21 N N N 0 -4.31 -0.385 -2.957
69 H21A H H21A N N N 0 -4.968 -2.008 -2.638
70 H22 H H22 N N N 0 -5.683 -1.274 -0.38
71 H22A H H22A N N N 0 -5.025 0.349 -0.699
72 H23 H H23 N N N 0 -6.579 0.602 -2.614
73 H23A H H23A N N N 0 -7.237 -1.02 -2.295
74 H24 H H24 N N N 0 -7.952 -0.286 -0.037
75 H24A H H24A N N N 0 -7.294 1.336 -0.356
76 H25 H H25 N N N 0 -8.849 1.59 -2.272
77 H25A H H25A N N N 0 -9.507 -0.033 -1.952
78 H26 H H26 N N N 0 -10.221 0.701 0.306
79 H26A H H26A N N N 0 -9.564 2.324 -0.014
80 H27 H H27 N N N 0 -11.118 2.577 -1.929
81 H27A H H27A N N N 0 -11.776 0.955 -1.61
82 H28 H H28 N N N 0 -12.491 1.689 0.648
83 H28A H H28A N N N 0 -11.833 3.312 0.329
84 H29 H H29 N N N 0 -13.387 3.565 -1.586
85 H29A H H29A N N N 0 -14.045 1.942 -1.267
86 H30 H H30 N N N 0 -14.76 2.676 0.991
87 H30A H H30A N N N 0 -14.102 4.299 0.672
88 H31 H H31 N N N 0 -15.656 4.552 -1.243
89 H31A H H31A N N N 0 -16.314 2.93 -0.924
90 H32 H H32 N N N 0 -17.029 3.664 1.334
91 H32A H H32A N N N 0 -16.371 5.286 1.015
92 H33 H H33 N N N 0 -17.926 5.54 -0.9
93 H33A H H33A N N N 0 -18.584 3.917 -0.581
94 H34 H H34 N N N 0 -19.299 4.651 1.677
95 H34A H H34A N N N 0 -18.641 6.274 1.358
96 H35 H H35 N N N 0 -20.195 6.528 -0.558
97 H35A H H35A N N N 0 -20.853 4.905 -0.238
98 H36 H H36 N N N 0 -22.294 6.661 0.756
99 H36A H H36A N N N 0 -21.568 5.639 2.02
100 H36B H H36B N N N 0 -20.91 7.261 1.7
101 H39 H H39 N N N 0 3.74 -0.3 -2.166
102 H39A H H39A N N N 0 3.726 -0.98 -0.521
103 H40 H H40 N N N 0 5.715 -2.355 -1.073
104 H40A H H40A N N N 0 5.729 -1.675 -2.718
105 H41 H H41 N N N 0 6.039 0.598 -1.776
106 H41A H H41A N N N 0 6.025 -0.082 -0.131
107 H42 H H42 N N N 0 8.014 -1.457 -0.682
108 H42A H H42A N N N 0 8.028 -0.776 -2.327
109 H43 H H43 N N N 0 8.337 1.496 -1.385
110 H43A H H43A N N N 0 8.323 0.816 0.26
111 H44 H H44 N N N 0 10.312 -0.559 -0.292
112 H44A H H44A N N N 0 10.326 0.122 -1.936
113 H45 H H45 N N N 0 10.636 2.394 -0.994
114 H45A H H45A N N N 0 10.622 1.714 0.651
115 H46 H H46 N N N 0 12.611 0.34 0.099
116 H46A H H46A N N N 0 12.624 1.02 -1.546
117 H48 H H48 N N N 0 12.934 3.292 -0.603
118 H48A H H48A N N N 0 12.92 2.612 1.042
119 H49 H H49 N N N 0 14.909 1.238 0.49
120 H49A H H49A N N N 0 14.923 1.918 -1.155
121 H50 H H50 N N N 0 15.233 4.191 -0.212
122 H50A H H50A N N N 0 15.219 3.51 1.433
123 H51 H H51 N N N 0 17.208 2.136 0.881
124 H51A H H51A N N N 0 17.221 2.816 -0.764
125 H52 H H52 N N N 0 17.531 5.089 0.179
126 H52A H H52A N N N 0 17.517 4.408 1.824
127 H53 H H53 N N N 0 19.506 3.034 1.272
128 H53A H H53A N N N 0 19.52 3.714 -0.373
129 H54 H H54 N N N 0 19.83 5.987 0.57
130 H54A H H54A N N N 0 19.816 5.306 2.214
131 H55 H H55 N N N 0 21.805 3.932 1.663
132 H55A H H55A N N N 0 21.818 4.613 0.018
133 H56 H H56 N N N 0 23.433 5.793 1.483
134 H56A H H56A N N N 0 22.128 6.885 0.96
135 H56B H H56B N N N 0 22.114 6.205 2.605
136 HXT H HXT N N N 0 -4.793 -4.034 5.822