Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : NCG    

Bonds between two atoms of the molecule

Total Number of Bonds: 126


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.39 N Y
2 C1 C6 C C sing 1.41 N Y
3 C1 C12 C C sing 1.5 N N
4 C2 C3 C C sing 1.39 N Y
5 C2 H8 C H sing 1.08 N N
6 C3 C4 C C doub 1.41 N Y
7 C3 C7 C C sing 1.45 N N
8 C4 C5 C C sing 1.39 N Y
9 C4 C9 C C sing 1.51 N N
10 C5 C6 C C doub 1.39 N Y
11 C5 H2 C H sing 1.08 N N
12 C6 C10 C C sing 1.5 N N
13 C7 C8 C C doub 1.34 N N
14 C7 H6 C H sing 1.08 N N
15 C8 C9 C C sing 1.52 N N
16 C8 H5 C H sing 1.08 N N
17 C9 C13 C C sing 1.52 N N
18 C9 O29 C O sing 1.42 N N
19 C10 C11 C C sing 1.55 N N
20 C10 SG C S sing 1.82 N N
21 C10 H12 C H sing 1.1 N N
22 C11 C12 C C sing 1.54 N N
23 C11 O26 C O sing 1.43 N N
24 C11 H11 C H sing 1.1 N N
25 C12 OXX C O sing 1.42 N N
26 C12 H10 C H sing 1.09 N N
27 C13 O14 C O sing 1.43 N N
28 C13 C17 C C sing 1.5 N N
29 C13 H13 C H sing 1.1 N N
30 O14 C15 O C sing 1.37 N N
31 C15 O16 C O sing 1.37 N N
32 C15 O19 C O doub 1.22 N N
33 O16 C17 O C sing 1.42 N N
34 C17 H14A C H sing 1.09 N N
35 C17 H14B C H sing 1.1 N N
36 O26 C27 O C sing 1.36 N N
37 C27 O28 C O doub 1.22 N N
38 C27 C68 C C sing 1.48 N N
39 O29 H66 O H sing 0.97 N N
40 C68 C71 C C sing 1.39 N Y
41 C68 C75 C C doub 1.39 N Y
42 C69 C70 C C doub 1.4 N Y
43 C69 C74 C C sing 1.39 N Y
44 C69 O87 C O sing 1.36 N N
45 C70 C71 C C sing 1.4 N Y
46 C70 H8B C H sing 1.09 N N
47 C71 C72 C C doub 1.41 N Y
48 C72 C73 C C sing 1.4 N Y
49 C72 C77 C C sing 1.4 N Y
50 C73 C74 C C doub 1.4 N Y
51 C73 C83 C C sing 1.5 N N
52 C74 H6B C H sing 1.09 N N
53 C75 C76 C C sing 1.39 N Y
54 C75 O82 C O sing 1.36 N N
55 C76 C77 C C doub 1.4 N Y
56 C76 H3B C H sing 1.09 N N
57 C77 H4B C H sing 1.09 N N
58 O82 H92 O H sing 0.97 N N
59 C83 HNM1 C H sing 1.09 N N
60 C83 HNM2 C H sing 1.1 N N
61 C83 HNM3 C H sing 1.1 N N
62 O87 C88 O C sing 1.43 N N
63 C88 H7M1 C H sing 1.09 N N
64 C88 H7M2 C H sing 1.09 N N
65 C88 H7M3 C H sing 1.09 N N
66 C94 C95 C C sing 1.53 N N
67 C94 C98 C C sing 1.53 N N
68 C94 NX0 C N sing 1.49 N N
69 C94 H2' C H sing 1.1 N N
70 C95 O96 C O sing 1.43 N N
71 C95 OXX C O sing 1.43 N N
72 C95 H1' C H sing 1.1 N N
73 O96 C97 O C sing 1.43 N N
74 C97 C99 C C sing 1.53 N N
75 C97 CXU C C sing 1.53 N N
76 C97 H5' C H sing 1.1 N N
77 C98 C99 C C sing 1.53 N N
78 C98 OXA C O sing 1.42 N N
79 C98 H3' C H sing 1.1 N N
80 C99 OXS C O sing 1.43 N N
81 C99 H4' C H sing 1.1 N N
82 OXS H104 O H sing 0.97 N N
83 CXU HFM1 C H sing 1.09 N N
84 CXU HFM2 C H sing 1.09 N N
85 CXU HFM3 C H sing 1.09 N N
86 NX0 CX2 N C sing 1.49 N N
87 NX0 H108 N H sing 1.03 N N
88 CX2 H2M1 C H sing 1.09 N N
89 CX2 H2M2 C H sing 1.09 N N
90 CX2 H2M3 C H sing 1.09 N N
91 OXA H120 O H sing 0.97 N N
92 N CA N C sing 1.44 N N
93 N C20 N C sing 1.39 N N
94 N H9 N H sing 1.02 N N
95 CA CB C C sing 1.53 N N
96 CA C C C sing 1.53 N N
97 CA HA C H sing 1.1 N N
98 CB SG C S sing 1.81 N N
99 CB HB1 C H sing 1.09 N N
100 CB HB2 C H sing 1.1 N N
101 C O5 C O doub 1.23 N N
102 C N1 C N sing 1.39 N N
103 N1 C21 N C sing 1.44 N N
104 N1 H3 N H sing 1.01 N N
105 C21 C22 C C sing 1.5 N N
106 C21 H1 C H sing 1.09 N N
107 C21 H7 C H sing 1.09 N N
108 C22 O2 C O doub 1.22 N N
109 C22 O3 C O sing 1.36 N N
110 O3 H4 O H sing 0.98 N N
111 C20 O34 C O doub 1.23 N N
112 C20 C18 C C sing 1.52 N N
113 C18 C14 C C sing 1.53 N N
114 C18 H14 C H sing 1.1 N N
115 C18 H15 C H sing 1.1 N N
116 C14 C16 C C sing 1.53 N N
117 C14 H16 C H sing 1.1 N N
118 C14 H17 C H sing 1.1 N N
119 C16 C19 C C sing 1.52 N N
120 C16 N2 C N sing 1.44 N N
121 C16 H18 C H sing 1.09 N N
122 C19 O1 C O doub 1.22 N N
123 C19 O4 C O sing 1.36 N N
124 O4 H21 O H sing 0.98 N N
125 N2 H19 N H sing 1.01 N N
126 N2 H20 N H sing 1.01 N N