Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : NCG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 120


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 1.095 -3.658 -0.907
2 C2 C C2 N Y N 0 1.951 -4.75 -0.968
3 C3 C C3 N Y N 0 2.438 -5.088 -2.22
4 C4 C C4 N Y N 0 2.087 -4.357 -3.376
5 C5 C C5 N Y N 0 1.236 -3.264 -3.314
6 C6 C C6 N Y N 0 0.747 -2.923 -2.059
7 C7 C C7 N N N 0 3.337 -6.168 -2.594
8 C8 C C8 N N N 0 3.528 -6.109 -3.921
9 C9 C C9 R N N 0 2.774 -4.964 -4.571
10 C10 C C10 S N N 0 -0.171 -1.783 -1.719
11 C11 C C11 S N N 0 -0.632 -2.167 -0.291
12 C12 C C12 R N N 0 0.449 -3.082 0.317
13 C13 C C13 R N N 0 3.706 -3.988 -5.28
14 O14 O O14 N N N 0 2.98 -2.843 -5.722
15 C15 C C15 N N N 0 3.547 -2.428 -6.895
16 O16 O O16 N N N 0 4.437 -3.358 -7.355
17 C17 C C17 N N N 0 4.283 -4.523 -6.557
18 O19 O O19 N N N 0 3.292 -1.372 -7.455
19 O26 O O26 N N N 0 -1.847 -2.919 -0.388
20 C27 C C27 N N N 0 -2.902 -2.263 -0.934
21 O28 O O28 N N N 0 -2.907 -1.112 -1.341
22 O29 O O29 N N N 0 1.81 -5.446 -5.498
23 C68 C C68 N Y N 0 -4.094 -3.147 -0.976
24 C69 C C69 N Y N 0 -3.778 -4.796 -4.295
25 C70 C C70 N Y N 0 -3.496 -3.974 -3.202
26 C71 C C71 N Y N 0 -4.345 -3.954 -2.084
27 C72 C C72 N Y N 0 -5.495 -4.778 -2.072
28 C73 C C73 N Y N 0 -5.763 -5.599 -3.18
29 C74 C C74 N Y N 0 -4.909 -5.606 -4.284
30 C75 C C75 N Y N 0 -4.931 -3.126 0.128
31 C76 C C76 N Y N 0 -6.062 -3.937 0.138
32 C77 C C77 N Y N 0 -6.344 -4.758 -0.954
33 O82 O O82 N N N 0 -4.68 -2.334 1.208
34 C83 C C83 N N N 0 -6.961 -6.495 -3.234
35 O87 O O87 N N N 0 -2.944 -4.806 -5.371
36 C88 C C88 N N N 0 -3.292 -5.668 -6.453
37 C94 C C94 R N N 0 2.12 -1.441 3.227
38 C95 C C95 R N N 0 1.112 -2.271 2.424
39 O96 O O96 N N N 0 0.975 -3.583 2.983
40 C97 C C97 R N N 0 2.206 -4.318 3.034
41 C98 C C98 R N N 0 3.464 -2.16 3.362
42 C99 C C99 R N N 0 3.24 -3.58 3.894
43 OXS O O100 N N N 0 2.76 -3.518 5.24
44 CXU C C102 N N N 0 1.881 -5.704 3.581
45 OXX O O105 N N N 0 1.412 -2.325 1.031
46 NX0 N N108 N N N 0 2.313 -0.123 2.564
47 CX2 C C110 N N N 0 3.176 0.82 3.323
48 OXA O O118 N N N 0 4.322 -1.471 4.267
49 N N N N N N 0 0.052 2.859 -2.566
50 CA C CA R N N 0 -0.345 2.366 -1.271
51 CB C CB N N N 0 -0.691 0.876 -1.295
52 SG S SG N N N 0 0.702 -0.188 -1.736
53 C C C N N N 0 0.739 2.72 -0.255
54 O5 O O5 N N N 0 1.938 2.716 -0.525
55 N1 N N1 N N N 0 0.21 3.016 0.994
56 C21 C C21 N N N 0 1.037 3.357 2.128
57 C22 C C22 N N N 0 1.235 4.842 2.148
58 O2 O O2 N N N 0 0.767 5.647 1.357
59 O3 O O3 N N N 0 2.028 5.19 3.194
60 C20 C C20 N N N 0 -0.858 3.346 -3.497
61 O34 O O34 N N N 0 -2.072 3.411 -3.326
62 C18 C C18 N N N 0 -0.166 3.826 -4.762
63 C14 C C14 N N N 0 -1.129 4.373 -5.817
64 C16 C C16 R N N 0 -0.431 4.82 -7.104
65 C19 C C19 N N N 0 -1.451 5.324 -8.106
66 O1 O O1 N N N 0 -1.683 4.814 -9.195
67 O4 O O4 N N N 0 -2.062 6.46 -7.68
68 N2 N N2 N N N 0 0.278 3.744 -7.747
69 H8 H H8 N N N 0 2.221 -5.308 -0.079
70 H2 H H2 N N N 0 0.968 -2.703 -4.201
71 H6 H H6 N N N 0 3.758 -6.886 -1.909
72 H5 H H5 N N N 0 4.148 -6.802 -4.473
73 H12 H H12 N N N 0 -1.017 -1.748 -2.414
74 H11 H H11 N N N 0 -0.853 -1.299 0.339
75 H10 H H10 N N N 0 0.03 -3.861 0.962
76 H13 H H13 N N N 0 4.489 -3.643 -4.596
77 H14A H H14A N N N 0 5.248 -5.015 -6.405
78 H14B H H14B N N N 0 3.612 -5.212 -7.082
79 H66 H H66 N N N 0 2.113 -6.321 -5.786
80 H8B H H8'' N N N 0 -2.603 -3.354 -3.245
81 H6B H H6'' N N N 0 -5.123 -6.245 -5.137
82 H3B H H3'' N N N 0 -6.732 -3.936 0.994
83 H4B H H4'' N N N 0 -7.236 -5.377 -0.907
84 H92 H H92 N N N 0 -4.893 -2.808 2.027
85 HNM1 H HNM1 N N N 0 -6.665 -7.501 -3.548
86 HNM2 H HNM2 N N N 0 -7.447 -6.56 -2.254
87 HNM3 H HNM3 N N N 0 -7.707 -6.111 -3.938
88 H7M1 H H7M1 N N N 0 -4.166 -6.264 -6.179
89 H7M2 H H7M2 N N N 0 -2.448 -6.324 -6.682
90 H7M3 H H7M3 N N N 0 -3.527 -5.061 -7.33
91 H2' H H2' N N N 0 1.721 -1.214 4.222
92 H4' H H4' N N N 0 4.189 -4.127 3.923
93 H1' H H1' N N N 0 0.126 -1.799 2.501
94 H5' H H5' N N N 0 2.585 -4.44 2.012
95 H3' H H3' N N N 0 3.972 -2.207 2.391
96 H104 H H104 N N N 0 3.054 -4.335 5.67
97 H108 H H108 N N N 0 2.716 -0.273 1.63
98 HFM1 H HFM1 N N N 0 1.116 -6.19 2.968
99 HFM2 H HFM2 N N N 0 2.774 -6.336 3.583
100 HFM3 H HFM3 N N N 0 1.507 -5.634 4.607
101 H2M1 H H2M1 N N N 0 2.778 1.819 3.139
102 H2M2 H H2M2 N N N 0 3.101 0.531 4.372
103 H2M3 H H2M3 N N N 0 4.186 0.698 2.93
104 H120 H H120 N N N 0 4.208 -1.894 5.133
105 H9 H H9 N N N 0 1.039 2.849 -2.809
106 HA H HA N N N 0 -1.247 2.932 -1.004
107 HB1 H HB1 N N N 0 -1.055 0.549 -0.316
108 HB2 H HB2 N N N 0 -1.488 0.689 -2.023
109 H3 H H3 N N N 0 -0.797 3.037 1.118
110 H1 H H1 N N N 0 2.004 2.859 2.026
111 H7 H H7 N N N 0 0.535 3.037 3.045
112 H4 H H4 N N N 0 2.176 6.159 3.234
113 H17 H H17 N N N 0 -1.888 3.614 -6.05
114 H14 H H14 N N N 0 0.441 3.013 -5.175
115 H15 H H15 N N N 0 0.522 4.628 -4.464
116 H16 H H16 N N N 0 -1.671 5.223 -5.383
117 H18 H H18 N N N 0 0.311 5.604 -6.921
118 H21 H H21 N N N 0 -2.707 6.849 -8.308
119 H19 H H19 N N N 0 1.282 3.71 -7.678
120 H20 H H20 N N N 0 -0.207 3.168 -8.414