Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : N5P    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OR2 NRO O N doub 1.22 N N
2 NRO CZ3 N C sing 1.48 N N
3 NRO OR1 N O sing 1.22 N N
4 CZ3 CH2 C C sing 1.39 N Y
5 CZ3 CE3 C C doub 1.37 N Y
6 CE3 CD2 C C sing 1.4 N Y
7 CE3 HE3 C H sing 1.08 N N
8 CD2 CE2 C C doub 1.41 N Y
9 CD2 CG C C sing 1.46 N Y
10 CH2 CZ2 C C doub 1.38 N Y
11 CH2 HH2 C H sing 1.08 N N
12 CZ2 CE2 C C sing 1.39 N Y
13 CZ2 HZ2 C H sing 1.08 N N
14 CE2 NE1 C N sing 1.38 N Y
15 NE1 C1' N C sing 1.46 N N
16 NE1 CD1 N C sing 1.37 N Y
17 CD1 CG C C doub 1.34 N Y
18 CD1 HD1 C H sing 1.08 N N
19 CG HG C H sing 1.08 N N
20 C1' C2' C C sing 1.54 N N
21 C1' O4' C O sing 1.44 N N
22 C1' H1' C H sing 1.09 N N
23 O4' C4' O C sing 1.44 N N
24 C4' C3' C C sing 1.55 N N
25 C4' C5' C C sing 1.53 N N
26 C4' H4' C H sing 1.09 N N
27 C3' C2' C C sing 1.55 N N
28 C3' O3' C O sing 1.43 N N
29 C3' H3' C H sing 1.09 N N
30 O3' HO3' O H sing 0.97 N N
31 C2' H2'1 C H sing 1.09 N N
32 C2' H2'2 C H sing 1.09 N N
33 C5' O5' C O sing 1.43 N N
34 C5' H5'1 C H sing 1.09 N N
35 C5' H5'2 C H sing 1.09 N N
36 O5' PA O P sing 1.61 N N
37 PA O3A P O sing 1.61 N N
38 PA O1A P O doub 1.48 N N
39 PA O2A P O sing 1.61 N N
40 O2A HO2A O H sing 0.97 N N
41 O3A PB O P sing 1.61 N N
42 PB O1B P O doub 1.48 N N
43 PB O3B P O sing 1.61 N N
44 PB O2B P O sing 1.61 N N
45 O2B HO2B O H sing 0.97 N N
46 O3B PG O P sing 1.61 N N
47 PG O1G P O doub 1.48 N N
48 PG O3G P O sing 1.61 N N
49 PG O2G P O sing 1.61 N N
50 O3G HOG3 O H sing 0.97 N N
51 O2G HOG2 O H sing 0.97 N N