Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : N5P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 OR2 O OR2 N N N 0 -9.522 2.25 1.175
2 NRO N NRO N N N 1 -8.869 2.213 0.148
3 OR1 O OR1 N N N -1 -9.295 2.739 -0.865
4 CZ3 C CZ3 N Y N 0 -7.553 1.535 0.131
5 CE3 C CE3 N Y N 0 -6.822 1.502 -1.023
6 CD2 C CD2 N Y N 0 -5.581 0.862 -1.039
7 CH2 C CH2 N Y N 0 -7.07 0.942 1.289
8 CZ2 C CZ2 N Y N 0 -5.848 0.306 1.296
9 CE2 C CE2 N Y N 0 -5.089 0.255 0.13
10 NE1 N NE1 N Y N 0 -3.863 -0.289 -0.179
11 CD1 C CD1 N Y N 0 -3.566 -0.049 -1.493
12 CG C CG N Y N 0 -4.563 0.642 -2.069
13 C1' C C1' R N N 0 -3.004 -1.017 0.758
14 O4' O O4' N N N 0 -1.641 -0.977 0.304
15 C4' C C4' R N N 0 -1.035 -2.233 0.679
16 C3' C C3' S N N 0 -2.15 -3.271 0.398
17 O3' O O3' N N N 0 -1.975 -4.438 1.204
18 C2' C C2' N N N 0 -3.425 -2.498 0.813
19 C5' C C5' N N N 0 0.196 -2.516 -0.185
20 O5' O O5' N N N 0 1.212 -1.553 0.103
21 PA P PA N N N 0 2.648 -1.549 -0.626
22 O1A O O1A N N N 0 3.289 -2.873 -0.459
23 O2A O O2A N N N 0 2.453 -1.241 -2.194
24 O3A O O3A N N N 0 3.581 -0.414 0.033
25 PB P PB N N N 0 5.159 -0.101 -0.008
26 O1B O O1B N N N 0 5.649 -0.216 -1.4
27 O2B O O2B N N N 0 5.94 -1.156 0.924
28 O3B O O3B N N N 0 5.425 1.392 0.532
29 PG P PG N N N 0 6.64 2.437 0.38
30 O3G O O3G N N N 0 6.146 3.903 0.824
31 O2G O O2G N N N 0 7.864 1.977 1.319
32 O1G O O1G N N N 0 7.087 2.472 -1.03
33 HE3 H HE3 N N N 0 -7.203 1.969 -1.919
34 HH2 H HH2 N N N 0 -7.657 0.98 2.195
35 HZ2 H HZ2 N N N 0 -5.48 -0.152 2.202
36 HD1 H HD1 N N N 0 -2.663 -0.368 -1.993
37 HG H HG N N N 0 -4.606 0.973 -3.096
38 H1' H H1' N N N 0 -3.079 -0.573 1.751
39 H4' H H4' N N N 0 -0.77 -2.23 1.737
40 H3' H H3' N N N 0 -2.181 -3.532 -0.66
41 HO3' H HO3' N N N 0 -2.649 -5.117 1.064
42 H2'1 H H2'1 N N N 0 -3.725 -2.772 1.825
43 H2'2 H H2'2 N N N 0 -4.235 -2.691 0.109
44 H5'1 H H5'1 N N N 0 0.571 -3.516 0.034
45 H5'2 H H5'2 N N N 0 -0.077 -2.453 -1.238
46 HO2A H HO2A N N N 0 2.038 -0.387 -2.378
47 HO2B H HO2B N N N 0 5.67 -1.137 1.852
48 HOG3 H HOG3 N N N 0 6.828 4.585 0.758
49 HOG2 H HOG2 N N N 0 7.643 1.931 2.26