Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : N5M    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O4 N5 O N doub 1.22 N N
2 N5 O3 N O sing 1.22 N N
3 N5 C5 N C sing 1.48 N N
4 C5 C4 C C sing 1.41 N N
5 C5 C6 C C doub 1.35 N N
6 C4 N4 C N sing 1.38 N N
7 C4 N3 C N doub 1.33 N N
8 N3 C2 N C sing 1.33 N N
9 C2 O2 C O doub 1.22 N N
10 C2 N1 C N sing 1.34 N N
11 C6 N1 C N sing 1.36 N N
12 N1 C1' N C sing 1.46 N N
13 C1' O4' C O sing 1.44 N N
14 C1' C2' C C sing 1.55 N N
15 O4' C4' O C sing 1.44 N N
16 C2' O2' C O sing 1.43 N N
17 C2' C3' C C sing 1.55 N N
18 C3' O3' C O sing 1.43 N N
19 C3' C4' C C sing 1.54 N N
20 C4' C5' C C sing 1.53 N N
21 C5' O5' C O sing 1.43 N N
22 O5' P O P sing 1.61 N N
23 P OP2 P O doub 1.48 N N
24 P OP1 P O sing 1.61 N N
25 P OP3 P O sing 1.61 N N
26 N4 HN4 N H sing 0.97 N N
27 N4 HN4A N H sing 0.97 N N
28 C6 H6 C H sing 1.08 N N
29 C1' H1' C H sing 1.09 N N
30 C2' H2' C H sing 1.09 N N
31 O2' HO2' O H sing 0.97 N N
32 C3' H3' C H sing 1.09 N N
33 O3' HO3' O H sing 0.97 N N
34 C4' H4' C H sing 1.09 N N
35 C5' H5' C H sing 1.09 N N
36 C5' H5'A C H sing 1.09 N N
37 OP1 HOP1 O H sing 0.97 N N
38 OP3 HOP3 O H sing 0.97 N N