data_N5M # _chem_comp.id N5M _chem_comp.name "5-nitrocytidine 5'-(dihydrogen phosphate)" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N4 O10 P" _chem_comp.mon_nstd_parent_comp_id C _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-12-28 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 368.194 _chem_comp.one_letter_code C _chem_comp.three_letter_code N5M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3BSN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal N5M O4 O4 O 0 1 N N N N N N 26.022 -17.636 -19.740 5.171 -0.195 2.237 O4 N5M 1 N5M N5 N5 N 1 1 N N N N N N 24.940 -17.927 -19.251 5.088 -0.765 1.164 N5 N5M 2 N5M O3 O3 O -1 1 N N N N N N 23.949 -17.289 -19.573 5.992 -1.492 0.790 O3 N5M 3 N5M C5 C5 C 0 1 N N N N N N 24.860 -19.022 -18.309 3.888 -0.581 0.318 C5 N5M 4 N5M C4 C4 C 0 1 N N N N N N 23.815 -19.171 -17.400 3.829 -1.143 -0.973 C4 N5M 5 N5M N4 N4 N 0 1 N N N N N N 22.788 -18.287 -17.339 4.890 -1.871 -1.460 N4 N5M 6 N5M N3 N3 N 0 1 N N N N N N 23.824 -20.227 -16.553 2.744 -0.967 -1.716 N3 N5M 7 N5M C2 C2 C 0 1 N N N N N N 24.830 -21.135 -16.575 1.711 -0.264 -1.255 C2 N5M 8 N5M O2 O2 O 0 1 N N N N N N 24.784 -22.091 -15.766 0.725 -0.116 -1.958 O2 N5M 9 N5M C6 C6 C 0 1 N N N N N N 25.877 -19.970 -18.308 2.827 0.126 0.775 C6 N5M 10 N5M N1 N1 N 0 1 N N N N N N 25.856 -21.006 -17.452 1.737 0.284 -0.027 N1 N5M 11 N5M "C1'" "C1'" C 0 1 N N R N N N 26.958 -21.981 -17.499 0.585 1.051 0.453 "C1'" N5M 12 N5M "O4'" "O4'" O 0 1 N N N N N N 28.123 -21.427 -18.133 -0.624 0.269 0.338 "O4'" N5M 13 N5M "C2'" "C2'" C 0 1 N N R N N N 26.541 -23.195 -18.322 0.345 2.283 -0.448 "C2'" N5M 14 N5M "O2'" "O2'" O 0 1 N N N N N N 26.764 -24.376 -17.547 0.912 3.454 0.142 "O2'" N5M 15 N5M "C3'" "C3'" C 0 1 N N S N N N 27.429 -23.171 -19.552 -1.194 2.402 -0.519 "C3'" N5M 16 N5M "O3'" "O3'" O 0 1 N N N N N N 27.840 -24.488 -19.935 -1.624 3.651 0.026 "O3'" N5M 17 N5M "C4'" "C4'" C 0 1 N N R N N N 28.621 -22.336 -19.122 -1.702 1.229 0.348 "C4'" N5M 18 N5M "C5'" "C5'" C 0 1 N N N N N N 29.301 -21.624 -20.289 -2.964 0.621 -0.266 "C5'" N5M 19 N5M "O5'" "O5'" O 0 1 N N N N N N 28.508 -20.553 -20.804 -3.441 -0.433 0.573 "O5'" N5M 20 N5M P P P 0 1 N N N N N N 29.160 -19.714 -22.022 -4.756 -1.298 0.232 P N5M 21 N5M OP2 OP2 O 0 1 N N N N N N 27.801 -19.061 -22.131 -4.623 -1.888 -1.119 OP2 N5M 22 N5M OP1 OP1 O 0 1 N N N N N N 29.921 -20.524 -23.048 -4.920 -2.475 1.318 OP1 N5M 23 N5M OP3 OP3 O 0 1 N Y N N N N 30.199 -18.704 -21.344 -6.052 -0.343 0.276 OP3 N5M 24 N5M HN4 HN4 H 0 1 N N N N N N 22.143 -18.566 -16.627 5.648 -2.066 -0.887 HN4 N5M 25 N5M HN4A HN4A H 0 0 N N N N N N 22.690 -17.478 -17.919 4.880 -2.190 -2.376 HN4A N5M 26 N5M H6 H6 H 0 1 N N N N N N 26.696 -19.873 -19.005 2.846 0.562 1.763 H6 N5M 27 N5M "H1'" "H1'" H 0 1 N N N N N N 27.190 -22.257 -16.460 0.739 1.360 1.487 "H1'" N5M 28 N5M "H2'" "H2'" H 0 1 N N N N N N 25.478 -23.181 -18.606 0.763 2.116 -1.441 "H2'" N5M 29 N5M "HO2'" "HO2'" H 0 0 N N N N N N 26.813 -25.129 -18.124 0.790 4.257 -0.382 "HO2'" N5M 30 N5M "H3'" "H3'" H 0 1 N N N N N N 26.911 -22.761 -20.431 -1.538 2.297 -1.548 "H3'" N5M 31 N5M "HO3'" "HO3'" H 0 0 N Y N N N N 27.931 -24.530 -20.880 -1.284 4.424 -0.445 "HO3'" N5M 32 N5M "H4'" "H4'" H 0 1 N N N N N N 29.417 -22.973 -18.709 -1.899 1.567 1.366 "H4'" N5M 33 N5M "H5'" "H5'" H 0 1 N N N N N N 30.259 -21.213 -19.938 -3.732 1.389 -0.356 "H5'" N5M 34 N5M "H5'A" "H5'A" H 0 0 N N N N N N 29.445 -22.357 -21.096 -2.732 0.222 -1.254 "H5'A" N5M 35 N5M HOP1 HOP1 H 0 0 N N N N N N 30.081 -19.991 -23.818 -5.694 -3.038 1.174 HOP1 N5M 36 N5M HOP3 HOP3 H 0 0 N N N N N N 30.894 -18.504 -21.960 -6.202 0.078 1.133 HOP3 N5M 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal N5M O4 N5 DOUB N N 1 N5M N5 O3 SING N N 2 N5M N5 C5 SING N N 3 N5M C5 C4 SING N N 4 N5M C5 C6 DOUB N N 5 N5M C4 N4 SING N N 6 N5M C4 N3 DOUB N N 7 N5M N3 C2 SING N N 8 N5M C2 O2 DOUB N N 9 N5M C2 N1 SING N N 10 N5M C6 N1 SING N N 11 N5M N1 "C1'" SING N N 12 N5M "C1'" "O4'" SING N N 13 N5M "C1'" "C2'" SING N N 14 N5M "O4'" "C4'" SING N N 15 N5M "C2'" "O2'" SING N N 16 N5M "C2'" "C3'" SING N N 17 N5M "C3'" "O3'" SING N N 18 N5M "C3'" "C4'" SING N N 19 N5M "C4'" "C5'" SING N N 20 N5M "C5'" "O5'" SING N N 21 N5M "O5'" P SING N N 22 N5M P OP2 DOUB N N 23 N5M P OP1 SING N N 24 N5M P OP3 SING N N 25 N5M N4 HN4 SING N N 26 N5M N4 HN4A SING N N 27 N5M C6 H6 SING N N 28 N5M "C1'" "H1'" SING N N 29 N5M "C2'" "H2'" SING N N 30 N5M "O2'" "HO2'" SING N N 31 N5M "C3'" "H3'" SING N N 32 N5M "O3'" "HO3'" SING N N 33 N5M "C4'" "H4'" SING N N 34 N5M "C5'" "H5'" SING N N 35 N5M "C5'" "H5'A" SING N N 36 N5M OP1 HOP1 SING N N 37 N5M OP3 HOP3 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor N5M SMILES ACDLabs 10.04 "[O-][N+](=O)C=1C(=NC(=O)N(C=1)C2OC(C(O)C2O)COP(=O)(O)O)N" N5M SMILES_CANONICAL CACTVS 3.341 NC1=NC(=O)N(C=C1[N+]([O-])=O)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O N5M SMILES CACTVS 3.341 NC1=NC(=O)N(C=C1[N+]([O-])=O)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O N5M SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)[N+](=O)[O-] N5M SMILES "OpenEye OEToolkits" 1.5.0 C1=C(C(=NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)N)[N+](=O)[O-] N5M InChI InChI 1.03 InChI=1S/C9H13N4O10P/c10-7-3(13(17)18)1-12(9(16)11-7)8-6(15)5(14)4(23-8)2-22-24(19,20)21/h1,4-6,8,14-15H,2H2,(H2,10,11,16)(H2,19,20,21)/t4-,5-,6-,8-/m1/s1 N5M InChIKey InChI 1.03 QPCLJXMRTPOKPG-UAKXSSHOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier N5M "SYSTEMATIC NAME" ACDLabs 10.04 "5-nitrocytidine 5'-(dihydrogen phosphate)" N5M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(4-amino-5-nitro-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site N5M 'Create component' 2007-12-28 RCSB N5M 'Modify descriptor' 2011-06-04 RCSB # loop_ _software.name _software.version _software.description rdkit 2025.03.3 'Core functionality.' pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal N5M O4 O 4.299 5.663 1 N5M N5 N 4.299 4.163 2 N5M O3 O 3.000 3.413 3 N5M C5 C 5.598 3.413 4 N5M C4 C 6.897 4.163 5 N5M N4 N 6.897 5.663 6 N5M N3 N 8.196 3.413 7 N5M C2 C 8.196 1.914 8 N5M O2 O 9.495 1.163 9 N5M C6 C 5.598 1.914 10 N5M N1 N 6.897 1.163 11 N5M "C1'" C 6.897 -0.337 12 N5M "O4'" O 8.111 -1.218 13 N5M "C2'" C 5.684 -1.218 14 N5M "O2'" O 4.257 -0.755 15 N5M "C3'" C 6.147 -2.645 16 N5M "O3'" O 5.265 -3.858 17 N5M "C4'" C 7.647 -2.645 18 N5M "C5'" C 8.529 -3.858 19 N5M "O5'" O 10.021 -3.701 20 N5M P P 10.902 -4.915 21 N5M OP2 O 11.784 -6.129 22 N5M OP1 O 12.116 -4.033 23 N5M OP3 O 9.689 -5.797 24 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal N5M O4 N5 DOUBLE NONE 1 N5M N5 O3 SINGLE NONE 2 N5M N5 C5 SINGLE NONE 3 N5M C5 C4 SINGLE NONE 4 N5M C5 C6 DOUBLE NONE 5 N5M C4 N4 SINGLE NONE 6 N5M C4 N3 DOUBLE NONE 7 N5M N3 C2 SINGLE NONE 8 N5M C2 O2 DOUBLE NONE 9 N5M C2 N1 SINGLE NONE 10 N5M C6 N1 SINGLE NONE 11 N5M "C1'" N1 SINGLE BEGINDASH 12 N5M "C1'" "O4'" SINGLE NONE 13 N5M "C1'" "C2'" SINGLE NONE 14 N5M "O4'" "C4'" SINGLE NONE 15 N5M "C2'" "O2'" SINGLE BEGINWEDGE 16 N5M "C2'" "C3'" SINGLE NONE 17 N5M "C3'" "O3'" SINGLE BEGINWEDGE 18 N5M "C3'" "C4'" SINGLE NONE 19 N5M "C4'" "C5'" SINGLE BEGINDASH 20 N5M "C5'" "O5'" SINGLE NONE 21 N5M "O5'" P SINGLE NONE 22 N5M P OP2 DOUBLE NONE 23 N5M P OP1 SINGLE NONE 24 N5M P OP3 SINGLE NONE 25 # loop_ _pdbe_chem_comp_substructure.comp_id _pdbe_chem_comp_substructure.substructure_name _pdbe_chem_comp_substructure.id _pdbe_chem_comp_substructure.substructure_type _pdbe_chem_comp_substructure.substructure_smiles _pdbe_chem_comp_substructure.substructure_inchis _pdbe_chem_comp_substructure.substructure_inchikeys N5M MurckoScaffold S1 scaffold 'O=c1ncccn1[C@H]1CCCO1' InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1 AKXKPKRAUWTVBW-SSDOTTSWSA-N N5M phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N N5M pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N N5M ribose F3 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal N5M C5 S1 1 N5M C4 S1 1 N5M N3 S1 1 N5M C2 S1 1 N5M O2 S1 1 N5M C6 S1 1 N5M N1 S1 1 N5M "C1'" S1 1 N5M "O4'" S1 1 N5M "C2'" S1 1 N5M "C3'" S1 1 N5M "C4'" S1 1 N5M "O5'" F1 1 N5M P F1 1 N5M OP2 F1 1 N5M OP1 F1 1 N5M OP3 F1 1 N5M C5 F2 1 N5M C4 F2 1 N5M N3 F2 1 N5M C2 F2 1 N5M N1 F2 1 N5M C6 F2 1 N5M "C2'" F3 1 N5M "C3'" F3 1 N5M "C4'" F3 1 N5M "O4'" F3 1 N5M "C1'" F3 1 N5M "C5'" F3 1 N5M "O5'" F3 1 N5M "O3'" F3 1 N5M "O2'" F3 1 # _pdbe_chem_comp_rdkit_properties.comp_id N5M _pdbe_chem_comp_rdkit_properties.exactmw 368.037 _pdbe_chem_comp_rdkit_properties.amw 368.195 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 14 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 6 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10 _pdbe_chem_comp_rdkit_properties.NumHBD 5 _pdbe_chem_comp_rdkit_properties.NumHBA 13 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24 _pdbe_chem_comp_rdkit_properties.NumAtoms 37 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 0 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.556 _pdbe_chem_comp_rdkit_properties.NumRings 2 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 1 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 2 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 150.735 _pdbe_chem_comp_rdkit_properties.tpsa 220.500 _pdbe_chem_comp_rdkit_properties.CrippenClogP -2.399 _pdbe_chem_comp_rdkit_properties.CrippenMR 71.944 _pdbe_chem_comp_rdkit_properties.chi0v 11.713 _pdbe_chem_comp_rdkit_properties.chi1v 6.846 _pdbe_chem_comp_rdkit_properties.chi2v 2.578 _pdbe_chem_comp_rdkit_properties.chi3v 2.578 _pdbe_chem_comp_rdkit_properties.chi4v 1.553 _pdbe_chem_comp_rdkit_properties.chi0n 23.819 _pdbe_chem_comp_rdkit_properties.chi1n 11.413 _pdbe_chem_comp_rdkit_properties.chi2n 2.264 _pdbe_chem_comp_rdkit_properties.chi3n 2.264 _pdbe_chem_comp_rdkit_properties.chi4n 1.359 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.930 _pdbe_chem_comp_rdkit_properties.kappa1 7.531 _pdbe_chem_comp_rdkit_properties.kappa2 6.523 _pdbe_chem_comp_rdkit_properties.kappa3 3.758 _pdbe_chem_comp_rdkit_properties.Phi 2.047 # loop_ _pdbe_chem_comp_external_mappings.comp_id _pdbe_chem_comp_external_mappings.source _pdbe_chem_comp_external_mappings.resource _pdbe_chem_comp_external_mappings.resource_id N5M UniChem ZINC ZINC000058650618 N5M UniChem PubChem 49867359 # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal N5M O4 -3.900 -2.120 -1.895 ETKDGv3 1 N5M N5 -2.934 -1.331 -1.953 ETKDGv3 2 N5M O3 -1.834 -1.684 -2.701 ETKDGv3 3 N5M C5 -2.889 -0.177 -1.098 ETKDGv3 4 N5M C4 -4.126 0.599 -0.776 ETKDGv3 5 N5M N4 -5.356 0.347 -1.460 ETKDGv3 6 N5M N3 -4.089 1.557 0.103 ETKDGv3 7 N5M C2 -2.878 1.926 0.765 ETKDGv3 8 N5M O2 -2.901 2.816 1.656 ETKDGv3 9 N5M C6 -1.721 0.185 -0.539 ETKDGv3 10 N5M N1 -1.649 1.281 0.392 ETKDGv3 11 N5M "C1'" -0.381 1.616 1.061 ETKDGv3 12 N5M "O4'" 0.692 1.504 0.147 ETKDGv3 13 N5M "C2'" -0.142 0.684 2.255 ETKDGv3 14 N5M "O2'" 0.229 1.430 3.387 ETKDGv3 15 N5M "C3'" 1.001 -0.183 1.788 ETKDGv3 16 N5M "O3'" 1.872 -0.501 2.845 ETKDGv3 17 N5M "C4'" 1.680 0.699 0.745 ETKDGv3 18 N5M "C5'" 2.398 -0.116 -0.336 ETKDGv3 19 N5M "O5'" 3.466 -0.830 0.241 ETKDGv3 20 N5M P 4.190 -1.789 -0.969 ETKDGv3 21 N5M OP2 3.218 -2.847 -1.442 ETKDGv3 22 N5M OP1 4.659 -0.828 -2.281 ETKDGv3 23 N5M OP3 5.559 -2.546 -0.324 ETKDGv3 24 N5M HN4 -5.397 -0.239 -2.321 ETKDGv3 25 N5M HN4A -6.226 0.848 -1.171 ETKDGv3 26 N5M H6 -0.828 -0.386 -0.756 ETKDGv3 27 N5M "H1'" -0.413 2.675 1.402 ETKDGv3 28 N5M "H2'" -1.031 0.051 2.488 ETKDGv3 29 N5M "HO2'" -0.608 1.818 3.755 ETKDGv3 30 N5M "H3'" 0.583 -1.107 1.322 ETKDGv3 31 N5M "HO3'" 2.357 -1.325 2.577 ETKDGv3 32 N5M "H4'" 2.421 1.368 1.241 ETKDGv3 33 N5M "H5'" 1.663 -0.801 -0.817 ETKDGv3 34 N5M "H5'A" 2.783 0.597 -1.100 ETKDGv3 35 N5M HOP1 5.299 -0.176 -1.898 ETKDGv3 36 N5M HOP3 5.232 -3.014 0.485 ETKDGv3 37 #