Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MIY    

Bonds between two atoms of the molecule

Total Number of Bonds: 63


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O8 C21 O C doub N N
2 C21 N2 C N sing N N
3 C21 C2 C C sing N N
4 N2 HN21 N H sing N N
5 N2 HN22 N H sing N N
6 C2 C1 C C sing N N
7 C2 C3 C C doub N N
8 C1 O1 C O doub N N
9 C1 C18 C C sing N N
10 C3 O2 C O sing N N
11 C3 C4 C C sing N N
12 O2 HO2 O H sing N N
13 C4 N1 C N sing N N
14 C4 C5 C C sing N N
15 C4 H4 C H sing N N
16 N1 C20 N C sing N N
17 N1 C19 N C sing N N
18 C20 H201 C H sing N N
19 C20 H202 C H sing N N
20 C20 H203 C H sing N N
21 C19 H191 C H sing N N
22 C19 H192 C H sing N N
23 C19 H193 C H sing N N
24 C5 C18 C C sing N N
25 C5 C6 C C sing N N
26 C5 H5 C H sing N N
27 C18 O7 C O sing N N
28 C18 C17 C C sing N N
29 O7 HO7 O H sing N N
30 C17 O6 C O sing N N
31 C17 C16 C C doub N N
32 O6 HO6 O H sing N N
33 C16 C7 C C sing N N
34 C16 C15 C C sing N N
35 C7 C6 C C sing N N
36 C7 C8 C C sing N N
37 C7 H7 C H sing N N
38 C6 H61 C H sing N N
39 C6 H62 C H sing N N
40 C15 O5 C O doub N N
41 C15 C14 C C sing N N
42 C14 C9 C C doub N Y
43 C14 C13 C C sing N Y
44 C9 C8 C C sing N N
45 C9 C10 C C sing N Y
46 C8 H81 C H sing N N
47 C8 H82 C H sing N N
48 C13 O4 C O sing N N
49 C13 C12 C C doub N Y
50 O4 HO4 O H sing N N
51 C12 C11 C C sing N Y
52 C12 H12 C H sing N N
53 C11 C10 C C doub N Y
54 C11 H11 C H sing N N
55 C10 N7 C N sing N N
56 N7 CN7 N C sing N N
57 N7 C71 N C sing N N
58 CN7 HN71 C H sing N N
59 CN7 HN72 C H sing N N
60 CN7 HN73 C H sing N N
61 C71 H711 C H sing N N
62 C71 H712 C H sing N N
63 C71 H713 C H sing N N