data_MIY
#
_chem_comp.id MIY
_chem_comp.name
;(4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-
CARBOXAMIDE
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H27 N3 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms MINOCYCLINE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-06-09
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 457.476
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MIY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "not provided"
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MIY O8 O8 O 0 1 N N N N N N 170.122 125.095 24.393 ? ? ? O8 MIY 1
MIY C21 C21 C 0 1 N N N N N N 169.361 125.575 25.231 ? ? ? C21 MIY 2
MIY N2 N2 N 0 1 N N N N N N 168.316 126.356 24.803 ? ? ? N2 MIY 3
MIY C2 C2 C 0 1 N N N N N N 169.644 125.355 26.712 ? ? ? C2 MIY 4
MIY C1 C1 C 0 1 N N N N N N 169.984 126.577 27.480 ? ? ? C1 MIY 5
MIY O1 O1 O 0 1 N N N N N N 169.986 127.677 26.928 ? ? ? O1 MIY 6
MIY C3 C3 C 0 1 N N N N N N 169.650 124.146 27.404 ? ? ? C3 MIY 7
MIY O2 O2 O 0 1 N N N N N N 169.610 122.998 26.696 ? ? ? O2 MIY 8
MIY C4 C4 C 0 1 N N S N N N 169.646 124.032 28.974 ? ? ? C4 MIY 9
MIY N1 N1 N 0 1 N N N N N N 170.572 122.948 29.612 ? ? ? N1 MIY 10
MIY C20 C20 C 0 1 N N N N N N 171.021 123.239 30.998 ? ? ? C20 MIY 11
MIY C19 C19 C 0 1 N N N N N N 171.706 122.378 28.813 ? ? ? C19 MIY 12
MIY C5 C5 C 0 1 N N S N N N 169.526 125.430 29.685 ? ? ? C5 MIY 13
MIY C18 C18 C 0 1 N N S N N N 170.403 126.444 28.946 ? ? ? C18 MIY 14
MIY O7 O7 O 0 1 N N N N N N 171.787 126.035 28.872 ? ? ? O7 MIY 15
MIY C17 C17 C 0 1 N N N N N N 170.380 127.707 29.794 ? ? ? C17 MIY 16
MIY O6 O6 O 0 1 N N N N N N 171.585 128.279 29.893 ? ? ? O6 MIY 17
MIY C16 C16 C 0 1 N N N N N N 169.300 128.216 30.451 ? ? ? C16 MIY 18
MIY C7 C7 C 0 1 N N R N N N 168.045 127.410 30.663 ? ? ? C7 MIY 19
MIY C6 C6 C 0 1 N N N N N N 168.100 126.045 29.912 ? ? ? C6 MIY 20
MIY C15 C15 C 0 1 N N N N N N 169.333 129.617 30.948 ? ? ? C15 MIY 21
MIY O5 O5 O 0 1 N N N N N N 170.331 130.341 30.983 ? ? ? O5 MIY 22
MIY C14 C14 C 0 1 Y N N N N N 168.086 130.283 31.363 ? ? ? C14 MIY 23
MIY C9 C9 C 0 1 Y N N N N N 166.900 129.688 30.998 ? ? ? C9 MIY 24
MIY C8 C8 C 0 1 N N N N N N 166.895 128.354 30.218 ? ? ? C8 MIY 25
MIY C13 C13 C 0 1 Y N N N N N 168.175 131.492 32.069 ? ? ? C13 MIY 26
MIY O4 O4 O 0 1 N N N N N N 169.410 132.031 32.412 ? ? ? O4 MIY 27
MIY C12 C12 C 0 1 Y N N N N N 167.007 132.153 32.458 ? ? ? C12 MIY 28
MIY C11 C11 C 0 1 Y N N N N N 165.809 131.571 32.113 ? ? ? C11 MIY 29
MIY C10 C10 C 0 1 Y N N N N N 165.762 130.366 31.397 ? ? ? C10 MIY 30
MIY N7 N7 N 0 1 N N N N N N 164.517 129.917 31.043 ? ? ? N7 MIY 31
MIY CN7 CN7 C 0 1 N N N N N N 164.283 130.648 29.779 ? ? ? CN7 MIY 32
MIY C71 C71 C 0 1 N N N N N N 163.594 130.387 32.085 ? ? ? C71 MIY 33
MIY HN21 1HN2 H 0 0 N N N N N N 167.655 126.812 25.399 ? ? ? HN21 MIY 34
MIY HN22 2HN2 H 0 0 N N N N N N 168.318 126.398 23.804 ? ? ? HN22 MIY 35
MIY HO2 HO2 H 0 1 N N N N N N 169.601 123.198 25.767 ? ? ? HO2 MIY 36
MIY H4 H4 H 0 1 N N N N N N 168.694 123.542 29.225 ? ? ? H4 MIY 37
MIY H201 1H20 H 0 0 N N N N N N 170.693 122.430 31.667 ? ? ? H201 MIY 38
MIY H202 2H20 H 0 0 N N N N N N 170.584 124.192 31.332 ? ? ? H202 MIY 39
MIY H203 3H20 H 0 0 N N N N N N 172.118 123.311 31.021 ? ? ? H203 MIY 40
MIY H191 1H19 H 0 0 N N N N N N 172.003 121.408 29.238 ? ? ? H191 MIY 41
MIY H192 2H19 H 0 0 N N N N N N 172.561 123.070 28.845 ? ? ? H192 MIY 42
MIY H193 3H19 H 0 0 N N N N N N 171.386 122.238 27.770 ? ? ? H193 MIY 43
MIY H5 H5 H 0 1 N N N N N N 169.863 125.215 30.710 ? ? ? H5 MIY 44
MIY HO7 HO7 H 0 1 N N N N N N 172.043 125.945 27.962 ? ? ? HO7 MIY 45
MIY HO6 HO6 H 0 1 N N N N N N 171.944 128.415 29.024 ? ? ? HO6 MIY 46
MIY H7 H7 H 0 1 N N N N N N 167.898 127.102 31.709 ? ? ? H7 MIY 47
MIY H61 1H6 H 0 1 N N N N N N 167.569 125.330 30.557 ? ? ? H61 MIY 48
MIY H62 2H6 H 0 1 N N N N N N 167.651 126.201 28.920 ? ? ? H62 MIY 49
MIY H81 1H8 H 0 1 N N N N N N 165.941 127.846 30.422 ? ? ? H81 MIY 50
MIY H82 2H8 H 0 1 N N N N N N 167.017 128.574 29.147 ? ? ? H82 MIY 51
MIY HO4 HO4 H 0 1 N N N N N N 169.931 132.154 31.627 ? ? ? HO4 MIY 52
MIY H12 H12 H 0 1 N N N N N N 167.043 133.082 33.007 ? ? ? H12 MIY 53
MIY H11 H11 H 0 1 N N N N N N 164.886 132.052 32.400 ? ? ? H11 MIY 54
MIY HN71 1HN7 H 0 0 N N N N N N 163.338 130.309 29.329 ? ? ? HN71 MIY 55
MIY HN72 2HN7 H 0 0 N N N N N N 165.112 130.451 29.083 ? ? ? HN72 MIY 56
MIY HN73 3HN7 H 0 0 N N N N N N 164.225 131.727 29.984 ? ? ? HN73 MIY 57
MIY H711 1H71 H 0 0 N N N N N N 162.785 129.653 32.216 ? ? ? H711 MIY 58
MIY H712 2H71 H 0 0 N N N N N N 163.166 131.355 31.786 ? ? ? H712 MIY 59
MIY H713 3H71 H 0 0 N N N N N N 164.139 130.504 33.033 ? ? ? H713 MIY 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MIY O8 C21 DOUB N N 1
MIY C21 N2 SING N N 2
MIY C21 C2 SING N N 3
MIY N2 HN21 SING N N 4
MIY N2 HN22 SING N N 5
MIY C2 C1 SING N N 6
MIY C2 C3 DOUB N N 7
MIY C1 O1 DOUB N N 8
MIY C1 C18 SING N N 9
MIY C3 O2 SING N N 10
MIY C3 C4 SING N N 11
MIY O2 HO2 SING N N 12
MIY C4 N1 SING N N 13
MIY C4 C5 SING N N 14
MIY C4 H4 SING N N 15
MIY N1 C20 SING N N 16
MIY N1 C19 SING N N 17
MIY C20 H201 SING N N 18
MIY C20 H202 SING N N 19
MIY C20 H203 SING N N 20
MIY C19 H191 SING N N 21
MIY C19 H192 SING N N 22
MIY C19 H193 SING N N 23
MIY C5 C18 SING N N 24
MIY C5 C6 SING N N 25
MIY C5 H5 SING N N 26
MIY C18 O7 SING N N 27
MIY C18 C17 SING N N 28
MIY O7 HO7 SING N N 29
MIY C17 O6 SING N N 30
MIY C17 C16 DOUB N N 31
MIY O6 HO6 SING N N 32
MIY C16 C7 SING N N 33
MIY C16 C15 SING N N 34
MIY C7 C6 SING N N 35
MIY C7 C8 SING N N 36
MIY C7 H7 SING N N 37
MIY C6 H61 SING N N 38
MIY C6 H62 SING N N 39
MIY C15 O5 DOUB N N 40
MIY C15 C14 SING N N 41
MIY C14 C9 DOUB Y N 42
MIY C14 C13 SING Y N 43
MIY C9 C8 SING N N 44
MIY C9 C10 SING Y N 45
MIY C8 H81 SING N N 46
MIY C8 H82 SING N N 47
MIY C13 O4 SING N N 48
MIY C13 C12 DOUB Y N 49
MIY O4 HO4 SING N N 50
MIY C12 C11 SING Y N 51
MIY C12 H12 SING N N 52
MIY C11 C10 DOUB Y N 53
MIY C11 H11 SING N N 54
MIY C10 N7 SING N N 55
MIY N7 CN7 SING N N 56
MIY N7 C71 SING N N 57
MIY CN7 HN71 SING N N 58
MIY CN7 HN72 SING N N 59
MIY CN7 HN73 SING N N 60
MIY C71 H711 SING N N 61
MIY C71 H712 SING N N 62
MIY C71 H713 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MIY SMILES ACDLabs 10.04 O=C(N)C1=C(O)C(N(C)C)C2CC4C(=C(O)C2(O)C1=O)C(=O)c3c(c(ccc3O)N(C)C)C4
MIY SMILES_CANONICAL CACTVS 3.341 CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(ccc(O)c4C(=O)C3=C(O)[C@]2(O)C(=O)C(=C1O)C(N)=O)N(C)C
MIY SMILES CACTVS 3.341 CN(C)[CH]1[CH]2C[CH]3Cc4c(ccc(O)c4C(=O)C3=C(O)[C]2(O)C(=O)C(=C1O)C(N)=O)N(C)C
MIY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CN(C)c1ccc(c2c1C[C@H]3C[C@H]4[C@@H](C(=C(C(=O)[C@]4(C(=C3C2=O)O)O)C(=O)N)O)N(C)C)O
MIY SMILES "OpenEye OEToolkits" 1.5.0 CN(C)c1ccc(c2c1CC3CC4C(C(=C(C(=O)C4(C(=C3C2=O)O)O)C(=O)N)O)N(C)C)O
MIY InChI InChI 1.03 InChI=1S/C23H27N3O7/c1-25(2)12-5-6-13(27)15-10(12)7-9-8-11-17(26(3)4)19(29)16(22(24)32)21(31)23(11,33)20(30)14(9)18(15)28/h5-6,9,11,17,27,29-30,33H,7-8H2,1-4H3,(H2,24,32)/t9-,11-,17-,23-/m0/s1
MIY InChIKey InChI 1.03 DYKFCLLONBREIL-KVUCHLLUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MIY "SYSTEMATIC NAME" ACDLabs 10.04 (4S,4aS,5aR,12aS)-4,7-bis(dimethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide
MIY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (4S,4aS,5aR,12aS)-4,7-bis(dimethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-4a,5,5a,6-tetrahydro-4H-tetracene-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MIY 'Create component' 2006-06-09 RCSB
MIY 'Modify descriptor' 2011-06-04 RCSB
MIY 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id MIY
_pdbx_chem_comp_synonyms.name MINOCYCLINE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id MIY
_pdbe_chem_comp_drugbank_details.drugbank_id DB01017
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Minocycline
_pdbe_chem_comp_drugbank_details.description
'Minocycline was first described in the literacture in 1966.[A190681] It is a second generation tetracycline antibiotic that is active against gram-negative and gram-positive bacteria.[A190723] Like other semisynthetic tetracyclines, minocycline has modifications to carbons 7-9 on the D ring to generate higher efficacy than previous tetracyclines.[A190723]  Minocycline was granted FDA approval on 30 June 1971.[L11695]'
_pdbe_chem_comp_drugbank_details.cas_number 10118-90-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Tetracyclines enter bacterial cells through OmpF and OmpC porins by coordinating with cations like magnesium.[A19429] This allows tetracyclines into the periplasm where they dissociate, allowing the lipophilic tetracycline to diffuse into the bacterial cytoplasm.[A19429] Tetracyclines prevent aminoacyl-tRNA from binding to the 30S ribosome, inhibiting protein synthesis.[A190723,A19429,L11710,L11713]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
MIY MINOCYCLINE wwPDB ?
MIY (4S,4aS,5aR,12aS)-4,7-bis(dimethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide DrugBank ?
MIY 7-Dimethylamino-6-demethyl-6-deoxytetracycline DrugBank ?
MIY Minociclinum DrugBank ?
MIY Minocyclin DrugBank ?
MIY Minocycline DrugBank ?
MIY Minocyclinum DrugBank ?
MIY Minomycin DrugBank ?
MIY Aknemin DrugBank 'International brand'
MIY Apo-Minocycline DrugBank 'International brand'
MIY Klinomycin DrugBank 'International brand'
MIY Minoderm DrugBank 'International brand'
MIY Minopen DrugBank 'International brand'
MIY Minox DrugBank 'International brand'
MIY Minoz DrugBank 'International brand'
MIY Vectrin DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id MIY
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01017
_pdbe_chem_comp_drugbank_classification.parent Tetracyclines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Tetracyclines
_pdbe_chem_comp_drugbank_classification.superclass 'Phenylpropanoids and polyketides'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as tetracyclines. These are polyketides having an octahydrotetracene-2-carboxamide skeleton, substituted with many hydroxy and other groups.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
MIY DB01017 'Small ribosomal subunit protein uS9' 'Escherichia coli (strain K12)' P0A7X3 yes 1
MIY DB01017 'Small ribosomal subunit protein uS4' 'Escherichia coli (strain K12)' P0A7V8 yes 2
MIY DB01017 'Interleukin-1 beta' Humans P01584 unknown 3
MIY DB01017 'Polyunsaturated fatty acid 5-lipoxygenase' Humans P09917 unknown 4
MIY DB01017 'Matrix metalloproteinase-9' Humans P14780 unknown 5
MIY DB01017 'Vascular endothelial growth factor A, long form' Humans P15692 unknown 6
MIY DB01017 Caspase-1 Humans P29466 unknown 7
MIY DB01017 Caspase-3 Humans P42574 unknown 8
MIY DB01017 'Cytochrome c' Humans P99999 unknown 9
MIY DB01017 'Mitogen-activated protein kinase 1' Humans P28482 unknown 10
MIY DB01017 'Mitogen-activated protein kinase 10' Humans P53779 unknown 11
MIY DB01017 'Mitogen-activated protein kinase 11' Humans Q15759 unknown 12
MIY DB01017 'Mitogen-activated protein kinase 12' Humans P53778 unknown 13
MIY DB01017 'Mitogen-activated protein kinase 13' Humans O15264 unknown 14
MIY DB01017 'Mitogen-activated protein kinase 14' Humans Q16539 unknown 15
MIY DB01017 'Mitogen-activated protein kinase 15' Humans Q8TD08 unknown 16
MIY DB01017 'Mitogen-activated protein kinase 3' Humans P27361 unknown 17
MIY DB01017 'Mitogen-activated protein kinase 4' Humans P31152 unknown 18
MIY DB01017 'Mitogen-activated protein kinase 6' Humans Q16659 unknown 19
MIY DB01017 'Mitogen-activated protein kinase 7' Humans Q13164 unknown 20
MIY DB01017 'Mitogen-activated protein kinase 8' Humans P45983 unknown 21
MIY DB01017 'Mitogen-activated protein kinase 9' Humans P45984 unknown 22
MIY DB01017 'Nitric oxide synthase, inducible' Humans P35228 unknown 23
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MIY O8 O -6.889 0.835 1
MIY C21 C -5.591 1.586 2
MIY N2 N -5.592 3.086 3
MIY C2 C -4.291 0.838 4
MIY C1 C -2.993 1.588 5
MIY O1 O -2.994 3.088 6
MIY C3 C -4.290 -0.662 7
MIY O2 O -5.589 -1.414 8
MIY C4 C -2.991 -1.412 9
MIY N1 N -2.989 -2.912 10
MIY C20 C -1.690 -3.660 11
MIY C19 C -4.288 -3.662 12
MIY C5 C -1.692 -0.660 13
MIY C18 C -1.693 0.840 14
MIY O7 O -1.695 2.340 15
MIY C17 C -0.395 1.591 16
MIY O6 O -0.396 3.091 17
MIY C16 C 0.905 0.842 18
MIY C7 C 0.906 -0.658 19
MIY C6 C -0.393 -1.409 20
MIY C15 C 2.203 1.593 21
MIY O5 O 2.202 3.093 22
MIY C14 C 3.503 0.844 23
MIY C9 C 3.504 -0.656 24
MIY C8 C 2.205 -1.407 25
MIY C13 C 4.801 1.595 26
MIY O4 O 4.800 3.095 27
MIY C12 C 6.101 0.846 28
MIY C11 C 6.102 -0.654 29
MIY C10 C 4.803 -1.405 30
MIY N7 N 4.805 -2.905 31
MIY CN7 C 6.104 -3.654 32
MIY C71 C 3.506 -3.656 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MIY O8 C21 DOUBLE NONE 1
MIY C21 N2 SINGLE NONE 2
MIY C21 C2 SINGLE NONE 3
MIY C2 C1 SINGLE NONE 4
MIY C2 C3 DOUBLE NONE 5
MIY C1 O1 DOUBLE NONE 6
MIY C1 C18 SINGLE NONE 7
MIY C3 O2 SINGLE NONE 8
MIY C3 C4 SINGLE NONE 9
MIY C4 N1 SINGLE BEGINDASH 10
MIY C4 C5 SINGLE NONE 11
MIY N1 C20 SINGLE NONE 12
MIY N1 C19 SINGLE NONE 13
MIY C5 C18 SINGLE NONE 14
MIY C5 C6 SINGLE NONE 15
MIY C18 O7 SINGLE BEGINDASH 16
MIY C18 C17 SINGLE NONE 17
MIY C17 O6 SINGLE NONE 18
MIY C17 C16 DOUBLE NONE 19
MIY C16 C7 SINGLE NONE 20
MIY C16 C15 SINGLE NONE 21
MIY C7 C6 SINGLE NONE 22
MIY C7 C8 SINGLE NONE 23
MIY C15 O5 DOUBLE NONE 24
MIY C15 C14 SINGLE NONE 25
MIY C14 C9 DOUBLE NONE 26
MIY C14 C13 SINGLE NONE 27
MIY C9 C8 SINGLE NONE 28
MIY C9 C10 SINGLE NONE 29
MIY C13 O4 SINGLE NONE 30
MIY C13 C12 DOUBLE NONE 31
MIY C12 C11 SINGLE NONE 32
MIY C11 C10 DOUBLE NONE 33
MIY C10 N7 SINGLE NONE 34
MIY N7 CN7 SINGLE NONE 35
MIY N7 C71 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MIY MurckoScaffold S1 scaffold 'O=C1C2=CC3C(=O)C=CC[C@@H]3C[C@@H]2Cc2ccccc21' InChI=1S/C18H16O2/c19-17-7-3-5-12-9-13-8-11-4-1-2-6-14(11)18(20)16(13)10-15(12)17/h1-4,6-7,10,12-13,15H,5,8-9H2/t12-,13+,15?/m1/s1 KRZVXWRCQRFOLN-NEJHNUGDSA-N
MIY amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
MIY phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MIY C2 S1 1
MIY C1 S1 1
MIY O1 S1 1
MIY C3 S1 1
MIY C4 S1 1
MIY C5 S1 1
MIY C18 S1 1
MIY C17 S1 1
MIY C16 S1 1
MIY C7 S1 1
MIY C6 S1 1
MIY C15 S1 1
MIY O5 S1 1
MIY C14 S1 1
MIY C9 S1 1
MIY C8 S1 1
MIY C13 S1 1
MIY C12 S1 1
MIY C11 S1 1
MIY C10 S1 1
MIY N2 F1 1
MIY C21 F1 1
MIY O8 F1 1
MIY C2 F1 1
MIY C14 F2 1
MIY C9 F2 1
MIY C10 F2 1
MIY C11 F2 1
MIY C12 F2 1
MIY C13 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MIY
_pdbe_chem_comp_rdkit_properties.exactmw 457.185
_pdbe_chem_comp_rdkit_properties.amw 457.483
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 60
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.435
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 228.157
_pdbe_chem_comp_rdkit_properties.tpsa 164.630
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.766
_pdbe_chem_comp_rdkit_properties.CrippenMR 116.035
_pdbe_chem_comp_rdkit_properties.chi0v 15.699
_pdbe_chem_comp_rdkit_properties.chi1v 8.494
_pdbe_chem_comp_rdkit_properties.chi2v 4.998
_pdbe_chem_comp_rdkit_properties.chi3v 4.998
_pdbe_chem_comp_rdkit_properties.chi4v 3.579
_pdbe_chem_comp_rdkit_properties.chi0n 42.699
_pdbe_chem_comp_rdkit_properties.chi1n 21.522
_pdbe_chem_comp_rdkit_properties.chi2n 4.998
_pdbe_chem_comp_rdkit_properties.chi3n 4.998
_pdbe_chem_comp_rdkit_properties.chi4n 3.579
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.370
_pdbe_chem_comp_rdkit_properties.kappa1 6.830
_pdbe_chem_comp_rdkit_properties.kappa2 7.324
_pdbe_chem_comp_rdkit_properties.kappa3 2.903
_pdbe_chem_comp_rdkit_properties.Phi 1.516
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MIY UniChem DrugBank DB01017
MIY UniChem 'KEGG LIGAND' C07225
MIY UniChem ChEBI 50694
MIY UniChem ChEBI 77906
MIY UniChem ZINC ZINC000014879992
MIY UniChem fdasrs FYY3R43WGO
MIY UniChem HMDB HMDB0015152
MIY UniChem NMRShiftDB 60023388
MIY UniChem ACTor 10118-90-8
MIY UniChem 'EPA CompTox Dashboard' DTXSID1045033
MIY UniChem DrugCentral 1813
MIY UniChem MetaboLights MTBLC50694
MIY UniChem MetaboLights MTBLC77906
MIY UniChem Rhea 77906
MIY UniChem DailyMed MINOCYCLINE
MIY UniChem ClinicalTrials AMZEEQ
MIY UniChem ClinicalTrials ARESTIN
MIY UniChem ClinicalTrials DYNACIN
MIY UniChem ClinicalTrials MINOCIN
MIY UniChem ClinicalTrials MINOCYCLINE
MIY UniChem ClinicalTrials 'MINOCYCLINE HYDROCHLORIDE'
MIY UniChem ClinicalTrials SOLODYN
MIY UniChem ClinicalTrials XIMINO
MIY UniChem rxnorm ARESTIN
MIY UniChem rxnorm MINOCIN
MIY UniChem rxnorm MINOCYCLINE
MIY UniChem rxnorm 'MINOCYCLINE HYDROCHLORIDE'
MIY UniChem rxnorm MINOLIRA
MIY UniChem rxnorm SOLODYN
MIY UniChem rxnorm XIMINO
MIY UniChem 'Probes And Drugs' PD009592
MIY UniChem LipidMaps LMPK07000002
MIY UniChem SureChEMBL SCHEMBL4042
MIY UniChem 'PubChem TPHARMA' 14808929
MIY UniChem 'PubChem TPHARMA' 14931367
MIY UniChem Nikkaji J8.983D
MIY UniChem BindingDb 50103599
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MIY O8 -3.326 2.197 2.698 ETKDGv3 1
MIY C21 -3.584 2.457 1.492 ETKDGv3 2
MIY N2 -4.256 3.672 1.161 ETKDGv3 3
MIY C2 -3.164 1.520 0.429 ETKDGv3 4
MIY C1 -2.235 2.014 -0.622 ETKDGv3 5
MIY O1 -2.034 3.256 -0.726 ETKDGv3 6
MIY C3 -3.554 0.224 0.441 ETKDGv3 7
MIY O2 -4.393 -0.288 1.438 ETKDGv3 8
MIY C4 -3.142 -0.730 -0.669 ETKDGv3 9
MIY N1 -4.093 -0.670 -1.824 ETKDGv3 10
MIY C20 -3.833 -1.756 -2.793 ETKDGv3 11
MIY C19 -5.502 -0.770 -1.387 ETKDGv3 12
MIY C5 -1.680 -0.401 -1.102 ETKDGv3 13
MIY C18 -1.552 1.069 -1.597 ETKDGv3 14
MIY O7 -2.208 1.205 -2.835 ETKDGv3 15
MIY C17 -0.091 1.496 -1.769 ETKDGv3 16
MIY O6 0.104 2.720 -2.420 ETKDGv3 17
MIY C16 0.956 0.762 -1.294 ETKDGv3 18
MIY C7 0.750 -0.488 -0.465 ETKDGv3 19
MIY C6 -0.686 -0.656 0.044 ETKDGv3 20
MIY C15 2.382 1.040 -1.638 ETKDGv3 21
MIY O5 2.670 1.838 -2.567 ETKDGv3 22
MIY C14 3.472 0.345 -0.888 ETKDGv3 23
MIY C9 3.169 -0.328 0.255 ETKDGv3 24
MIY C8 1.734 -0.474 0.717 ETKDGv3 25
MIY C13 4.907 0.394 -1.338 ETKDGv3 26
MIY O4 5.292 0.855 -2.598 ETKDGv3 27
MIY C12 5.871 -0.064 -0.531 ETKDGv3 28
MIY C11 5.540 -0.700 0.751 ETKDGv3 29
MIY C10 4.263 -0.850 1.124 ETKDGv3 30
MIY N7 3.959 -1.474 2.382 ETKDGv3 31
MIY CN7 3.638 -0.632 3.533 ETKDGv3 32
MIY C71 4.370 -2.858 2.617 ETKDGv3 33
MIY HN21 -4.518 3.886 0.173 ETKDGv3 34
MIY HN22 -4.523 4.347 1.912 ETKDGv3 35
MIY HO2 -4.810 0.275 2.168 ETKDGv3 36
MIY H4 -3.152 -1.759 -0.242 ETKDGv3 37
MIY H201 -4.635 -1.809 -3.562 ETKDGv3 38
MIY H202 -3.763 -2.745 -2.289 ETKDGv3 39
MIY H203 -2.907 -1.560 -3.367 ETKDGv3 40
MIY H191 -5.663 -1.671 -0.753 ETKDGv3 41
MIY H192 -5.802 0.141 -0.828 ETKDGv3 42
MIY H193 -6.188 -0.816 -2.260 ETKDGv3 43
MIY H5 -1.376 -1.089 -1.918 ETKDGv3 44
MIY HO7 -1.723 0.651 -3.502 ETKDGv3 45
MIY HO6 0.915 3.308 -2.283 ETKDGv3 46
MIY H7 0.988 -1.365 -1.109 ETKDGv3 47
MIY H61 -0.871 0.045 0.887 ETKDGv3 48
MIY H62 -0.814 -1.692 0.429 ETKDGv3 49
MIY H81 1.616 -1.424 1.283 ETKDGv3 50
MIY H82 1.494 0.370 1.400 ETKDGv3 51
MIY HO4 4.655 0.962 -3.373 ETKDGv3 52
MIY H12 6.907 -0.023 -0.844 ETKDGv3 53
MIY H11 6.343 -1.059 1.383 ETKDGv3 54
MIY HN71 4.555 -0.453 4.132 ETKDGv3 55
MIY HN72 3.229 0.347 3.206 ETKDGv3 56
MIY HN73 2.877 -1.133 4.168 ETKDGv3 57
MIY H711 5.396 -2.879 3.041 ETKDGv3 58
MIY H712 4.355 -3.432 1.666 ETKDGv3 59
MIY H713 3.670 -3.347 3.327 ETKDGv3 60
#