Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : M54    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N16 N15 N N sing 1.4 N Y
2 N16 C17 N C doub 1.31 N Y
3 N15 C14 N C sing 1.35 N Y
4 C17 C13 C C sing 1.41 N Y
5 O C12 O C doub 1.22 N N
6 C14 C13 C C doub 1.37 N Y
7 C13 C C C sing 1.48 N Y
8 C12 N C N sing 1.35 N N
9 C12 C8 C C sing 1.46 N N
10 N C11 N C sing 1.36 N N
11 C3 C C C doub 1.39 N Y
12 C3 C4 C C sing 1.4 N Y
13 C C1 C C sing 1.4 N Y
14 C8 C4 C C doub 1.46 N Y
15 C8 C9 C C sing 1.41 N Y
16 C11 C10 C C doub 1.36 N N
17 C4 C5 C C sing 1.42 N Y
18 C1 C2 C C doub 1.36 N Y
19 C23 C26 C C doub 1.38 N Y
20 C23 C22 C C sing 1.4 N Y
21 C10 C9 C C sing 1.47 N N
22 C10 C22 C C sing 1.48 N N
23 C9 C7 C C doub 1.4 N Y
24 C5 C2 C C sing 1.4 N Y
25 C5 C6 C C doub 1.41 N Y
26 C26 C24 C C sing 1.38 N Y
27 C22 C27 C C doub 1.39 N Y
28 C7 C6 C C sing 1.36 N Y
29 C6 C18 C C sing 1.51 N N
30 C18 C19 C C sing 1.53 N N
31 C24 C25 C C doub 1.39 N Y
32 C27 C25 C C sing 1.39 N Y
33 C25 O28 C O sing 1.36 N N
34 C19 C20 C C sing 1.53 N N
35 C20 N21 C N sing 1.47 N N
36 C1 H1 C H sing 1.08 N N
37 C2 H2 C H sing 1.08 N N
38 C3 H3 C H sing 1.08 N N
39 C7 H7 C H sing 1.08 N N
40 C11 H11 C H sing 1.08 N N
41 N HN N H sing 0.97 N N
42 C14 H14 C H sing 1.08 N N
43 N15 HN15 N H sing 0.97 N N
44 C17 H17 C H sing 1.08 N N
45 C18 H181 C H sing 1.09 N N
46 C18 H182 C H sing 1.09 N N
47 C19 H191 C H sing 1.09 N N
48 C19 H192 C H sing 1.09 N N
49 C20 H201 C H sing 1.09 N N
50 C20 H202 C H sing 1.09 N N
51 N21 H211 N H sing 1.01 N N
52 N21 H212 N H sing 1.01 N N
53 C23 H23 C H sing 1.08 N N
54 C24 H24 C H sing 1.08 N N
55 C26 H26 C H sing 1.08 N N
56 C27 H27 C H sing 1.08 N N
57 O28 HO28 O H sing 0.97 N N