data_M54
#
_chem_comp.id M54
_chem_comp.name 6-(3-aminopropyl)-4-(3-hydroxyphenyl)-9-(1H-pyrazol-4-yl)benzo[h]isoquinolin-1(2H)-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H22 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-09-18
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 410.468
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code M54
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2R0U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M54 C C C 0 1 Y N N N N N 19.878 -2.087 9.405 -3.673 -0.025 0.262 C M54 1
M54 C1 C1 C 0 1 Y N N N N N 19.987 -3.372 10.119 -3.438 -1.365 0.599 C1 M54 2
M54 C2 C2 C 0 1 Y N N N N N 18.859 -3.952 10.816 -2.171 -1.852 0.682 C2 M54 3
M54 C3 C3 C 0 1 Y N N N N N 18.610 -1.397 9.363 -2.613 0.829 0.005 C3 M54 4
M54 C4 C4 C 0 1 Y N N N N N 17.455 -1.964 9.992 -1.305 0.345 0.084 C4 M54 5
M54 C5 C5 C 0 1 Y N N N N N 17.586 -3.268 10.739 -1.076 -1.011 0.427 C5 M54 6
M54 C6 C6 C 0 1 Y N N N N N 16.446 -3.858 11.382 0.245 -1.497 0.507 C6 M54 7
M54 C7 C7 C 0 1 Y N N N N N 15.196 -3.233 11.306 1.309 -0.694 0.262 C7 M54 8
M54 C8 C8 C 0 1 Y N N N N N 16.158 -1.331 9.940 -0.154 1.203 -0.176 C8 M54 9
M54 C9 C9 C 0 1 Y N N N N N 14.989 -1.959 10.617 1.139 0.655 -0.080 C9 M54 10
M54 C10 C10 C 0 1 N N N N N N 13.689 -1.315 10.565 2.284 1.537 -0.346 C10 M54 11
M54 C11 C11 C 0 1 N N N N N N 13.494 -0.098 9.954 2.059 2.836 -0.672 C11 M54 12
M54 N N N 0 1 N N N N N N 14.631 0.508 9.279 0.805 3.353 -0.761 N M54 13
M54 C12 C12 C 0 1 N N N N N N 15.886 -0.049 9.216 -0.297 2.611 -0.534 C12 M54 14
M54 O O O 0 1 N N N N N N 16.778 0.595 8.561 -1.404 3.112 -0.624 O M54 15
M54 C13 C13 C 0 1 Y N N N N N 21.074 -1.505 8.730 -5.065 0.481 0.173 C13 M54 16
M54 C14 C14 C 0 1 Y N N N N N 22.346 -2.116 8.684 -6.202 -0.243 0.392 C14 M54 17
M54 N15 N15 N 0 1 Y N N N N N 23.120 -1.229 7.973 -7.252 0.583 0.211 N15 M54 18
M54 N16 N16 N 0 1 Y N N N N N 22.353 -0.136 7.623 -6.760 1.849 -0.128 N16 M54 19
M54 C17 C17 C 0 1 Y N N N N N 21.088 -0.282 8.051 -5.455 1.796 -0.148 C17 M54 20
M54 C18 C18 C 0 1 N N N N N N 16.705 -5.199 12.110 0.479 -2.941 0.873 C18 M54 21
M54 C19 C19 C 0 1 N N N N N N 16.302 -5.192 13.542 0.385 -3.807 -0.384 C19 M54 22
M54 C20 C20 C 0 1 N N N N N N 16.906 -4.180 14.410 0.623 -5.272 -0.013 C20 M54 23
M54 N21 N21 N 0 1 N N N N N N 16.332 -4.433 15.753 0.533 -6.104 -1.220 N21 M54 24
M54 C22 C22 C 0 1 Y N N N N N 12.477 -1.966 11.232 3.668 1.014 -0.259 C22 M54 25
M54 C23 C23 C 0 1 Y N N N N N 11.321 -2.375 10.375 4.105 0.039 -1.156 C23 M54 26
M54 C24 C24 C 0 1 Y N N N N N 10.063 -3.310 12.342 6.256 0.033 -0.103 C24 M54 27
M54 C25 C25 C 0 1 Y N N N N N 11.193 -2.928 13.123 5.831 1.006 0.790 C25 M54 28
M54 C26 C26 C 0 1 Y N N N N N 10.110 -3.005 10.931 5.395 -0.445 -1.074 C26 M54 29
M54 C27 C27 C 0 1 Y N N N N N 12.421 -2.298 12.630 4.538 1.499 0.715 C27 M54 30
M54 O28 O28 O 0 1 N N N N N N 11.156 -3.189 14.291 6.683 1.476 1.739 O28 M54 31
M54 H1 H1 H 0 1 N N N N N N 20.933 -3.894 10.122 -4.274 -2.020 0.797 H1 M54 32
M54 H2 H2 H 0 1 N N N N N N 18.964 -4.869 11.377 -2.007 -2.887 0.943 H2 M54 33
M54 H3 H3 H 0 1 N N N N N N 18.532 -0.448 8.854 -2.796 1.861 -0.256 H3 M54 34
M54 H7 H7 H 0 1 N N N N N N 14.349 -3.711 11.775 2.307 -1.101 0.333 H7 M54 35
M54 H11 H11 H 0 1 N N N N N N 12.531 0.390 9.975 2.905 3.479 -0.866 H11 M54 36
M54 HN HN H 0 1 N N N N N N 14.490 1.390 8.830 0.699 4.288 -0.997 HN M54 37
M54 H14 H14 H 0 1 N N N N N N 22.643 -3.063 9.110 -6.251 -1.288 0.662 H14 M54 38
M54 HN15 HN15 H 0 0 N N N N N N 24.086 -1.356 7.746 -8.187 0.341 0.301 HN15 M54 39
M54 H17 H17 H 0 1 N N N N N N 20.261 0.397 7.903 -4.790 2.616 -0.377 H17 M54 40
M54 H181 1H18 H 0 0 N N N N N N 16.128 -5.982 11.597 1.469 -3.047 1.315 H181 M54 41
M54 H182 2H18 H 0 0 N N N N N N 17.790 -5.378 12.081 -0.276 -3.260 1.592 H182 M54 42
M54 H191 1H19 H 0 0 N N N N N N 15.215 -5.026 13.567 -0.605 -3.700 -0.826 H191 M54 43
M54 H192 2H19 H 0 0 N N N N N N 16.652 -6.155 13.941 1.140 -3.487 -1.103 H192 M54 44
M54 H201 1H20 H 0 0 N N N N N N 18.002 -4.277 14.425 1.613 -5.379 0.429 H201 M54 45
M54 H202 2H20 H 0 0 N N N N N N 16.695 -3.159 14.059 -0.132 -5.592 0.705 H202 M54 46
M54 H211 1H21 H 0 0 N N N N N N 17.070 -4.490 16.426 1.179 -5.786 -1.927 H211 M54 47
M54 H212 2H21 H 0 0 N N N N N N 15.715 -3.685 15.998 0.686 -7.077 -1.001 H212 M54 48
M54 H23 H23 H 0 1 N N N N N N 11.376 -2.202 9.310 3.435 -0.336 -1.915 H23 M54 49
M54 H24 H24 H 0 1 N N N N N N 9.211 -3.805 12.785 7.264 -0.350 -0.043 H24 M54 50
M54 H26 H26 H 0 1 N N N N N N 9.270 -3.235 10.293 5.732 -1.200 -1.768 H26 M54 51
M54 H27 H27 H 0 1 N N N N N N 13.250 -2.091 13.290 4.206 2.257 1.409 H27 M54 52
M54 HO28 HO28 H 0 0 N N N N N N 11.146 -4.132 14.405 7.202 2.242 1.457 HO28 M54 53
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M54 N16 N15 SING Y N 1
M54 N16 C17 DOUB Y N 2
M54 N15 C14 SING Y N 3
M54 C17 C13 SING Y N 4
M54 O C12 DOUB N N 5
M54 C14 C13 DOUB Y N 6
M54 C13 C SING Y N 7
M54 C12 N SING N N 8
M54 C12 C8 SING N N 9
M54 N C11 SING N N 10
M54 C3 C DOUB Y N 11
M54 C3 C4 SING Y N 12
M54 C C1 SING Y N 13
M54 C8 C4 DOUB Y N 14
M54 C8 C9 SING Y N 15
M54 C11 C10 DOUB N N 16
M54 C4 C5 SING Y N 17
M54 C1 C2 DOUB Y N 18
M54 C23 C26 DOUB Y N 19
M54 C23 C22 SING Y N 20
M54 C10 C9 SING N N 21
M54 C10 C22 SING N N 22
M54 C9 C7 DOUB Y N 23
M54 C5 C2 SING Y N 24
M54 C5 C6 DOUB Y N 25
M54 C26 C24 SING Y N 26
M54 C22 C27 DOUB Y N 27
M54 C7 C6 SING Y N 28
M54 C6 C18 SING N N 29
M54 C18 C19 SING N N 30
M54 C24 C25 DOUB Y N 31
M54 C27 C25 SING Y N 32
M54 C25 O28 SING N N 33
M54 C19 C20 SING N N 34
M54 C20 N21 SING N N 35
M54 C1 H1 SING N N 36
M54 C2 H2 SING N N 37
M54 C3 H3 SING N N 38
M54 C7 H7 SING N N 39
M54 C11 H11 SING N N 40
M54 N HN SING N N 41
M54 C14 H14 SING N N 42
M54 N15 HN15 SING N N 43
M54 C17 H17 SING N N 44
M54 C18 H181 SING N N 45
M54 C18 H182 SING N N 46
M54 C19 H191 SING N N 47
M54 C19 H192 SING N N 48
M54 C20 H201 SING N N 49
M54 C20 H202 SING N N 50
M54 N21 H211 SING N N 51
M54 N21 H212 SING N N 52
M54 C23 H23 SING N N 53
M54 C24 H24 SING N N 54
M54 C26 H26 SING N N 55
M54 C27 H27 SING N N 56
M54 O28 HO28 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M54 SMILES ACDLabs 10.04 O=C5c3c2c(ccc(c1cnnc1)c2)c(cc3C(c4cccc(O)c4)=CN5)CCCN
M54 SMILES_CANONICAL CACTVS 3.341 NCCCc1cc2C(=CNC(=O)c2c3cc(ccc13)c4c[nH]nc4)c5cccc(O)c5
M54 SMILES CACTVS 3.341 NCCCc1cc2C(=CNC(=O)c2c3cc(ccc13)c4c[nH]nc4)c5cccc(O)c5
M54 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(cc(c1)O)C2=CNC(=O)c3c2cc(c4c3cc(cc4)c5c[nH]nc5)CCCN
M54 SMILES "OpenEye OEToolkits" 1.5.0 c1cc(cc(c1)O)C2=CNC(=O)c3c2cc(c4c3cc(cc4)c5c[nH]nc5)CCCN
M54 InChI InChI 1.03 InChI=1S/C25H22N4O2/c26-8-2-4-17-11-22-23(16-3-1-5-19(30)9-16)14-27-25(31)24(22)21-10-15(6-7-20(17)21)18-12-28-29-13-18/h1,3,5-7,9-14,30H,2,4,8,26H2,(H,27,31)(H,28,29)
M54 InChIKey InChI 1.03 BUSJQQYKXHYDNN-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M54 "SYSTEMATIC NAME" ACDLabs 10.04 6-(3-aminopropyl)-4-(3-hydroxyphenyl)-9-(1H-pyrazol-4-yl)benzo[h]isoquinolin-1(2H)-one
M54 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 6-(3-aminopropyl)-4-(3-hydroxyphenyl)-9-(1H-pyrazol-4-yl)-2H-benzo[h]isoquinolin-1-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M54 'Create component' 2007-09-18 RCSB
M54 'Modify aromatic_flag' 2011-06-04 RCSB
M54 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
M54 C C 9.509 3.155 1
M54 C1 C 10.862 2.374 2
M54 C2 C 10.850 0.811 3
M54 C3 C 8.162 2.363 4
M54 C4 C 8.186 0.801 5
M54 C5 C 9.485 0.051 6
M54 C6 C 9.485 -1.449 7
M54 C7 C 8.186 -2.199 8
M54 C8 C 6.887 0.051 9
M54 C9 C 6.887 -1.449 10
M54 C10 C 5.546 -2.251 11
M54 C11 C 4.187 -1.480 12
M54 N N 4.187 0.082 13
M54 C12 C 5.546 0.853 14
M54 O O 5.563 2.353 15
M54 C13 C 9.503 4.655 16
M54 C14 C 10.713 5.541 17
M54 N15 N 10.244 6.966 18
M54 N16 N 8.744 6.960 19
M54 C17 C 8.286 5.532 20
M54 C18 C 10.784 -2.199 21
M54 C19 C 10.784 -3.699 22
M54 C20 C 12.083 -4.449 23
M54 N21 N 12.083 -5.949 24
M54 C22 C 5.563 -3.751 25
M54 C23 C 6.871 -4.486 26
M54 C24 C 5.598 -6.751 27
M54 C25 C 4.290 -6.016 28
M54 C26 C 6.888 -5.986 29
M54 C27 C 4.273 -4.516 30
M54 O28 O 3.000 -6.781 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
M54 N16 N15 SINGLE NONE 1
M54 N16 C17 DOUBLE NONE 2
M54 N15 C14 SINGLE NONE 3
M54 C17 C13 SINGLE NONE 4
M54 O C12 DOUBLE NONE 5
M54 C14 C13 DOUBLE NONE 6
M54 C13 C SINGLE NONE 7
M54 C12 N SINGLE NONE 8
M54 C12 C8 SINGLE NONE 9
M54 N C11 SINGLE NONE 10
M54 C3 C SINGLE NONE 11
M54 C3 C4 DOUBLE NONE 12
M54 C C1 DOUBLE NONE 13
M54 C8 C4 SINGLE NONE 14
M54 C8 C9 DOUBLE NONE 15
M54 C11 C10 DOUBLE NONE 16
M54 C4 C5 SINGLE NONE 17
M54 C1 C2 SINGLE NONE 18
M54 C23 C26 DOUBLE NONE 19
M54 C23 C22 SINGLE NONE 20
M54 C10 C9 SINGLE NONE 21
M54 C10 C22 SINGLE NONE 22
M54 C9 C7 SINGLE NONE 23
M54 C5 C2 DOUBLE NONE 24
M54 C5 C6 SINGLE NONE 25
M54 C26 C24 SINGLE NONE 26
M54 C22 C27 DOUBLE NONE 27
M54 C7 C6 DOUBLE NONE 28
M54 C6 C18 SINGLE NONE 29
M54 C18 C19 SINGLE NONE 30
M54 C24 C25 DOUBLE NONE 31
M54 C27 C25 SINGLE NONE 32
M54 C25 O28 SINGLE NONE 33
M54 C19 C20 SINGLE NONE 34
M54 C20 N21 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
M54 MurckoScaffold S1 scaffold 'O=c1[nH]cc(-c2ccccc2)c2ccc3ccc(-c4cn[nH]c4)cc3c12' InChI=1S/C22H15N3O/c26-22-21-18(20(13-23-22)14-4-2-1-3-5-14)9-8-15-6-7-16(10-19(15)21)17-11-24-25-12-17/h1-13H,(H,23,26)(H,24,25) VAHPFYFVNNXRPW-UHFFFAOYSA-N
M54 benzoisoquinoline F1 fragment c1ccc2c(c1)ccc1ccncc12 InChI=1S/C13H9N/c1-2-4-12-10(3-1)5-6-11-7-8-14-9-13(11)12/h1-9H FZICDBOJOMQACG-UHFFFAOYSA-N
M54 isoquinoline F2 fragment c1ccc2cnccc2c1 InChI=1S/C9H7N/c1-2-4-9-7-10-6-5-8(9)3-1/h1-7H AWJUIBRHMBBTKR-UHFFFAOYSA-N
M54 napthalene F3 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
M54 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
M54 pyrazole F5 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
M54 pyridine F6 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
M54 C S1 1
M54 C1 S1 1
M54 C2 S1 1
M54 C3 S1 1
M54 C4 S1 1
M54 C5 S1 1
M54 C6 S1 1
M54 C7 S1 1
M54 C8 S1 1
M54 C9 S1 1
M54 C10 S1 1
M54 C11 S1 1
M54 N S1 1
M54 C12 S1 1
M54 O S1 1
M54 C13 S1 1
M54 C14 S1 1
M54 N15 S1 1
M54 N16 S1 1
M54 C17 S1 1
M54 C22 S1 1
M54 C23 S1 1
M54 C24 S1 1
M54 C25 S1 1
M54 C26 S1 1
M54 C27 S1 1
M54 C2 F1 1
M54 C1 F1 1
M54 C F1 1
M54 C3 F1 1
M54 C4 F1 1
M54 C5 F1 1
M54 C6 F1 1
M54 C7 F1 1
M54 C9 F1 1
M54 C8 F1 1
M54 C12 F1 1
M54 N F1 1
M54 C11 F1 1
M54 C10 F1 1
M54 C6 F2 1
M54 C7 F2 1
M54 C9 F2 1
M54 C8 F2 1
M54 C4 F2 1
M54 C5 F2 1
M54 C12 F2 1
M54 N F2 1
M54 C11 F2 1
M54 C10 F2 1
M54 C F3 1
M54 C1 F3 1
M54 C2 F3 1
M54 C5 F3 1
M54 C4 F3 1
M54 C3 F3 1
M54 C8 F3 1
M54 C9 F3 1
M54 C7 F3 1
M54 C6 F3 1
M54 C F4 1
M54 C3 F4 1
M54 C4 F4 1
M54 C5 F4 1
M54 C2 F4 1
M54 C1 F4 1
M54 C4 F4 2
M54 C8 F4 2
M54 C9 F4 2
M54 C7 F4 2
M54 C6 F4 2
M54 C5 F4 2
M54 C22 F4 3
M54 C23 F4 3
M54 C26 F4 3
M54 C24 F4 3
M54 C25 F4 3
M54 C27 F4 3
M54 C14 F5 1
M54 C13 F5 1
M54 C17 F5 1
M54 N16 F5 1
M54 N15 F5 1
M54 C11 F6 1
M54 C10 F6 1
M54 C9 F6 1
M54 C8 F6 1
M54 C12 F6 1
M54 N F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id M54
_pdbe_chem_comp_rdkit_properties.exactmw 410.174
_pdbe_chem_comp_rdkit_properties.amw 410.477
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 53
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.120
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 209.145
_pdbe_chem_comp_rdkit_properties.tpsa 107.790
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.101
_pdbe_chem_comp_rdkit_properties.CrippenMR 116.309
_pdbe_chem_comp_rdkit_properties.chi0v 15.105
_pdbe_chem_comp_rdkit_properties.chi1v 8.476
_pdbe_chem_comp_rdkit_properties.chi2v 4.265
_pdbe_chem_comp_rdkit_properties.chi3v 4.265
_pdbe_chem_comp_rdkit_properties.chi4v 3.005
_pdbe_chem_comp_rdkit_properties.chi0n 37.105
_pdbe_chem_comp_rdkit_properties.chi1n 19.173
_pdbe_chem_comp_rdkit_properties.chi2n 4.265
_pdbe_chem_comp_rdkit_properties.chi3n 4.265
_pdbe_chem_comp_rdkit_properties.chi4n 3.005
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.900
_pdbe_chem_comp_rdkit_properties.kappa1 6.547
_pdbe_chem_comp_rdkit_properties.kappa2 7.737
_pdbe_chem_comp_rdkit_properties.kappa3 3.367
_pdbe_chem_comp_rdkit_properties.Phi 1.634
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
M54 UniChem ZINC ZINC000016052489
M54 UniChem SureChEMBL SCHEMBL4292407
M54 UniChem PubChem 16758227
M54 UniChem Nikkaji J2.983.001K
M54 UniChem BindingDb 50223484
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
M54 C 3.737 -1.221 0.218 ETKDGv3 1
M54 C1 3.796 0.041 -0.237 ETKDGv3 2
M54 C2 2.567 0.765 -0.600 ETKDGv3 3
M54 C3 2.413 -1.884 0.315 ETKDGv3 4
M54 C4 1.286 -1.265 -0.100 ETKDGv3 5
M54 C5 1.364 0.161 -0.528 ETKDGv3 6
M54 C6 0.090 0.892 -0.779 ETKDGv3 7
M54 C7 -1.077 0.282 -0.521 ETKDGv3 8
M54 C8 -0.062 -1.917 -0.039 ETKDGv3 9
M54 C9 -1.178 -1.147 -0.111 ETKDGv3 10
M54 C10 -2.537 -1.743 0.128 ETKDGv3 11
M54 C11 -2.678 -3.068 0.279 ETKDGv3 12
M54 N -1.545 -3.933 0.221 ETKDGv3 13
M54 C12 -0.238 -3.395 0.019 ETKDGv3 14
M54 O 0.719 -4.185 -0.196 ETKDGv3 15
M54 C13 4.964 -1.961 0.610 ETKDGv3 16
M54 C14 6.166 -1.455 0.865 ETKDGv3 17
M54 N15 7.037 -2.518 1.216 ETKDGv3 18
M54 N16 6.304 -3.705 1.161 ETKDGv3 19
M54 C17 5.094 -3.411 0.813 ETKDGv3 20
M54 C18 0.066 2.335 -1.241 ETKDGv3 21
M54 C19 0.176 3.289 -0.042 ETKDGv3 22
M54 C20 0.072 4.768 -0.452 ETKDGv3 23
M54 N21 1.245 5.227 -1.196 ETKDGv3 24
M54 C22 -3.741 -0.890 0.271 ETKDGv3 25
M54 C23 -4.929 -1.132 -0.585 ETKDGv3 26
M54 C24 -6.058 0.705 0.558 ETKDGv3 27
M54 C25 -4.992 0.926 1.343 ETKDGv3 28
M54 C26 -6.024 -0.375 -0.450 ETKDGv3 29
M54 C27 -3.784 0.086 1.197 ETKDGv3 30
M54 O28 -5.008 1.940 2.300 ETKDGv3 31
M54 H1 4.740 0.558 -0.340 ETKDGv3 32
M54 H2 2.672 1.800 -0.887 ETKDGv3 33
M54 H3 2.372 -2.858 0.773 ETKDGv3 34
M54 H7 -1.992 0.838 -0.682 ETKDGv3 35
M54 H11 -3.654 -3.500 0.468 ETKDGv3 36
M54 HN -1.681 -4.965 0.301 ETKDGv3 37
M54 H14 6.455 -0.413 0.840 ETKDGv3 38
M54 HN15 8.045 -2.447 1.477 ETKDGv3 39
M54 H17 4.319 -4.154 0.685 ETKDGv3 40
M54 H181 -0.879 2.547 -1.789 ETKDGv3 41
M54 H182 0.880 2.512 -1.971 ETKDGv3 42
M54 H191 -0.654 3.069 0.665 ETKDGv3 43
M54 H192 1.130 3.117 0.502 ETKDGv3 44
M54 H201 -0.023 5.384 0.468 ETKDGv3 45
M54 H202 -0.845 4.935 -1.058 ETKDGv3 46
M54 H211 1.256 4.775 -2.138 ETKDGv3 47
M54 H212 2.113 4.943 -0.687 ETKDGv3 48
M54 H23 -4.911 -1.919 -1.330 ETKDGv3 49
M54 H24 -6.949 1.312 0.655 ETKDGv3 50
M54 H26 -6.887 -0.550 -1.078 ETKDGv3 51
M54 H27 -2.936 0.267 1.846 ETKDGv3 52
M54 HO28 -5.816 2.537 2.431 ETKDGv3 53
#