Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : LP5    

Bonds between two atoms of the molecule

Total Number of Bonds: 114


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O48 P45 O P sing 1.62 N N
2 O48 HO48 O H sing 0.98 N N
3 P45 O1 P O sing 1.61 N N
4 P45 O47 P O doub 1.5 N N
5 P45 O46 P O sing 1.62 N N
6 O46 HO46 O H sing 0.98 N N
7 O1 C1 O C sing 1.43 N N
8 C1 C2 C C sing 1.53 N N
9 C1 O5 C O sing 1.43 N N
10 C1 H1 C H sing 1.09 N N
11 C2 C3 C C sing 1.53 N N
12 C2 N2 C N sing 1.45 N N
13 C2 H2 C H sing 1.1 N N
14 N2 C7 N C sing 1.39 N N
15 N2 HN2 N H sing 1.02 N N
16 C7 O7 C O doub 1.23 N N
17 C7 C8 C C sing 1.52 N N
18 C8 C16 C C sing 1.53 N N
19 C8 H81 C H sing 1.1 N N
20 C8 H82 C H sing 1.1 N N
21 C16 C17 C C sing 1.53 N N
22 C16 O44 C O sing 1.43 N N
23 C16 H16 C H sing 1.1 N N
24 O44 HO44 O H sing 0.97 N N
25 C17 C18 C C sing 1.53 N N
26 C17 H171 C H sing 1.1 N N
27 C17 H172 C H sing 1.1 N N
28 C18 C19 C C sing 1.53 N N
29 C18 H181 C H sing 1.1 N N
30 C18 H182 C H sing 1.1 N N
31 C19 C20 C C sing 1.53 N N
32 C19 H191 C H sing 1.1 N N
33 C19 H192 C H sing 1.1 N N
34 C20 C21 C C sing 1.53 N N
35 C20 H201 C H sing 1.1 N N
36 C20 H202 C H sing 1.1 N N
37 C21 C22 C C sing 1.53 N N
38 C21 H211 C H sing 1.1 N N
39 C21 H212 C H sing 1.1 N N
40 C22 C23 C C sing 1.53 N N
41 C22 H221 C H sing 1.1 N N
42 C22 H222 C H sing 1.1 N N
43 C23 C24 C C sing 1.53 N N
44 C23 H231 C H sing 1.1 N N
45 C23 H232 C H sing 1.1 N N
46 C24 C25 C C sing 1.53 N N
47 C24 H241 C H sing 1.1 N N
48 C24 H242 C H sing 1.09 N N
49 C25 C26 C C sing 1.53 N N
50 C25 H251 C H sing 1.1 N N
51 C25 H252 C H sing 1.1 N N
52 C26 C27 C C sing 1.52 N N
53 C26 H261 C H sing 1.1 N N
54 C26 H262 C H sing 1.1 N N
55 C27 H271 C H sing 1.09 N N
56 C27 H272 C H sing 1.09 N N
57 C27 H273 C H sing 1.09 N N
58 C3 O3 C O sing 1.43 N N
59 C3 C4 C C sing 1.53 N N
60 C3 H3 C H sing 1.1 N N
61 C4 O4 C O sing 1.43 N N
62 C4 C5 C C sing 1.54 N N
63 C4 H4 C H sing 1.1 N N
64 C5 C6 C C sing 1.53 N N
65 C5 O5 C O sing 1.43 N N
66 C5 H5 C H sing 1.1 N N
67 C6 O6 C O sing 1.41 N N
68 C6 H61 C H sing 1.09 N N
69 C6 H62 C H sing 1.09 N N
70 O6 HO6 O H sing 0.97 N N
71 O4 HO4 O H sing 0.97 N N
72 O3 C28 O C sing 1.37 N N
73 C28 C29 C C sing 1.52 N N
74 C28 O42 C O doub 1.22 N N
75 C29 C30 C C sing 1.53 N N
76 C29 H291 C H sing 1.1 N N
77 C29 H292 C H sing 1.09 N N
78 C30 C31 C C sing 1.53 N N
79 C30 O43 C O sing 1.43 N N
80 C30 H30 C H sing 1.1 N N
81 O43 HO43 O H sing 0.97 N N
82 C31 C32 C C sing 1.53 N N
83 C31 H311 C H sing 1.1 N N
84 C31 H312 C H sing 1.1 N N
85 C32 C33 C C sing 1.53 N N
86 C32 H321 C H sing 1.1 N N
87 C32 H322 C H sing 1.1 N N
88 C33 C34 C C sing 1.53 N N
89 C33 H331 C H sing 1.1 N N
90 C33 H332 C H sing 1.1 N N
91 C34 C35 C C sing 1.53 N N
92 C34 H341 C H sing 1.1 N N
93 C34 H342 C H sing 1.1 N N
94 C35 C36 C C sing 1.53 N N
95 C35 H351 C H sing 1.1 N N
96 C35 H352 C H sing 1.1 N N
97 C36 C37 C C sing 1.53 N N
98 C36 H361 C H sing 1.1 N N
99 C36 H362 C H sing 1.1 N N
100 C37 C38 C C sing 1.53 N N
101 C37 H371 C H sing 1.1 N N
102 C37 H372 C H sing 1.1 N N
103 C38 C39 C C sing 1.53 N N
104 C38 H381 C H sing 1.1 N N
105 C38 H382 C H sing 1.1 N N
106 C39 C40 C C sing 1.53 N N
107 C39 H391 C H sing 1.1 N N
108 C39 H392 C H sing 1.1 N N
109 C40 C41 C C sing 1.52 N N
110 C40 H401 C H sing 1.1 N N
111 C40 H402 C H sing 1.1 N N
112 C41 H411 C H sing 1.09 N N
113 C41 H412 C H sing 1.09 N N
114 C41 H413 C H sing 1.09 N N