data_LP5
#
_chem_comp.id LP5
_chem_comp.name
"(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H66 N O12 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-12-26
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 711.861
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LP5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LP5 O48 O48 O 0 1 N N N N N N -5.704 13.036 25.514 3.685 2.929 3.663 O48 LP5 1
LP5 P45 P45 P 0 1 N N N N N N -4.473 12.320 25.012 3.192 4.207 2.803 P45 LP5 2
LP5 O46 O46 O 0 1 N N N N N N -3.200 12.678 25.737 1.989 4.816 3.697 O46 LP5 3
LP5 O47 O47 O 0 1 N N N N N N -4.695 10.835 24.817 4.268 5.188 2.437 O47 LP5 4
LP5 O1 O1 O 0 1 N N N N N N -4.321 12.970 23.537 2.406 3.552 1.554 O1 LP5 5
LP5 C1 C1 C 0 1 N N R N N N -3.112 13.020 22.782 1.370 2.611 1.828 C1 LP5 6
LP5 C2 C2 C 0 1 N N R N N N -3.316 14.019 21.652 1.297 1.601 0.676 C2 LP5 7
LP5 N2 N2 N 0 1 N N N N N N -3.743 15.265 22.262 1.148 2.270 -0.600 N2 LP5 8
LP5 C7 C7 C 0 1 N N N N N N -2.893 16.268 22.487 1.691 1.757 -1.769 C7 LP5 9
LP5 C8 C8 C 0 1 N N N N N N -3.478 17.507 23.133 1.388 2.647 -2.965 C8 LP5 10
LP5 C16 C16 C 0 1 N N R N N N -4.024 18.437 22.064 2.005 2.126 -4.267 C16 LP5 11
LP5 O44 O44 O 0 1 N N N N N N -5.014 17.744 21.301 3.416 2.003 -4.099 O44 LP5 12
LP5 C17 C17 C 0 1 N N N N N N -2.894 18.838 21.135 1.709 3.078 -5.434 C17 LP5 13
LP5 C18 C18 C 0 1 N N N N N N -3.434 19.814 20.107 2.290 2.633 -6.782 C18 LP5 14
LP5 C19 C19 C 0 1 N N N N N N -2.607 21.089 20.111 1.959 3.588 -7.931 C19 LP5 15
LP5 C20 C20 C 0 1 N N N N N N -2.985 21.938 18.914 2.633 3.141 -9.231 C20 LP5 16
LP5 C21 C21 C 0 1 N N N N N N -3.714 23.208 19.315 2.364 4.081 -10.410 C21 LP5 17
LP5 C22 C22 C 0 1 N N N N N N -3.125 24.366 18.529 3.030 3.694 -11.734 C22 LP5 18
LP5 C23 C23 C 0 1 N N N N N N -4.014 25.583 18.662 2.820 4.671 -12.896 C23 LP5 19
LP5 C24 C24 C 0 1 N N N N N N -3.665 26.647 17.643 3.573 4.274 -14.168 C24 LP5 20
LP5 C25 C25 C 0 1 N N N N N N -4.721 27.737 17.678 3.254 5.232 -15.319 C25 LP5 21
LP5 C26 C26 C 0 1 N N N N N N -4.058 29.032 18.094 4.004 4.899 -16.611 C26 LP5 22
LP5 C27 C27 C 0 1 N N N N N N -4.190 30.078 17.020 3.712 5.864 -17.749 C27 LP5 23
LP5 O7 O7 O 0 1 N N N N N N -1.705 16.217 22.216 2.336 0.714 -1.846 O7 LP5 24
LP5 C3 C3 C 0 1 N N R N N N -4.509 13.602 20.814 0.157 0.600 0.905 C3 LP5 25
LP5 C4 C4 C 0 1 N N R N N N -4.282 12.189 20.288 -1.154 1.294 1.291 C4 LP5 26
LP5 C5 C5 C 0 1 N N R N N N -3.932 11.239 21.439 -0.979 2.416 2.329 C5 LP5 27
LP5 O5 O5 O 0 1 N N N N N N -2.826 11.745 22.191 0.119 3.275 1.999 O5 LP5 28
LP5 C6 C6 C 0 1 N N N N N N -3.637 9.814 20.967 -0.872 1.912 3.767 C6 LP5 29
LP5 O6 O6 O 0 1 N N N N N N -2.651 9.768 19.927 -0.704 3.026 4.623 O6 LP5 30
LP5 O4 O4 O 0 1 N N N N N N -5.451 11.711 19.599 -1.709 1.864 0.102 O4 LP5 31
LP5 O3 O3 O 0 1 N N N N N N -4.631 14.550 19.758 0.523 -0.304 1.947 O3 LP5 32
LP5 C28 C28 C 0 1 N N N N N N -5.988 14.799 19.279 1.665 -1.024 1.729 C28 LP5 33
LP5 O42 O42 O 0 1 N N N N N N -6.959 14.231 19.775 2.094 -1.371 0.637 O42 LP5 34
LP5 C29 C29 C 0 1 N N N N N N -6.167 15.774 18.139 2.326 -1.311 3.062 C29 LP5 35
LP5 C30 C30 C 0 1 N N R N N N -5.117 16.875 18.258 3.639 -2.084 2.906 C30 LP5 36
LP5 O43 O43 O 0 1 N N N N N N -5.717 18.132 17.908 3.379 -3.294 2.185 O43 LP5 37
LP5 C31 C31 C 0 1 N N N N N N -3.921 16.566 17.362 4.281 -2.472 4.245 C31 LP5 38
LP5 C32 C32 C 0 1 N N N N N N -3.915 17.406 16.088 4.584 -1.322 5.208 C32 LP5 39
LP5 C33 C33 C 0 1 N N N N N N -3.641 18.881 16.348 5.601 -0.319 4.661 C33 LP5 40
LP5 C34 C34 C 0 1 N N N N N N -3.166 19.607 15.091 5.934 0.755 5.700 C34 LP5 41
LP5 C35 C35 C 0 1 N N N N N N -1.696 19.329 14.788 6.978 1.740 5.168 C35 LP5 42
LP5 C36 C36 C 0 1 N N N N N N -1.154 20.272 13.712 7.332 2.792 6.221 C36 LP5 43
LP5 C37 C37 C 0 1 N N N N N N -0.205 21.338 14.272 8.391 3.793 5.751 C37 LP5 44
LP5 C38 C38 C 0 1 N N N N N N -0.902 22.633 14.721 8.798 4.800 6.829 C38 LP5 45
LP5 C39 C39 C 0 1 N N N N N N 0.097 23.742 15.061 9.848 5.781 6.303 C39 LP5 46
LP5 C40 C40 C 0 1 N N N N N N -0.382 25.009 14.371 10.233 6.808 7.368 C40 LP5 47
LP5 C41 C41 C 0 1 N N N N N N -0.206 26.208 15.276 11.301 7.764 6.859 C41 LP5 48
LP5 HO48 HO48 H 0 0 N N N N N N -5.624 13.186 26.449 4.249 3.077 4.451 HO48 LP5 49
LP5 HO46 HO46 H 0 0 N N N N N N -2.489 12.753 25.111 2.210 5.357 4.484 HO46 LP5 50
LP5 H1 H1 H 0 1 N N N N N N -2.282 13.304 23.445 1.640 2.111 2.764 H1 LP5 51
LP5 H2 H2 H 0 1 N N N N N N -2.393 14.090 21.057 2.256 1.073 0.614 H2 LP5 52
LP5 HN2 HN2 H 0 1 N N N N N N -4.703 15.375 22.521 0.629 3.142 -0.640 HN2 LP5 53
LP5 H81 1H8 H 0 1 N N N N N N -2.693 18.027 23.702 0.297 2.704 -3.063 H81 LP5 54
LP5 H82 2H8 H 0 1 N N N N N N -4.294 17.213 23.809 1.769 3.650 -2.738 H82 LP5 55
LP5 H16 H16 H 0 1 N N N N N N -4.464 19.327 22.537 1.612 1.128 -4.489 H16 LP5 56
LP5 HO44 HO44 H 0 0 N N N N N N -5.780 17.590 21.841 3.622 1.060 -4.186 HO44 LP5 57
LP5 H171 1H17 H 0 0 N N N N N N -2.496 17.947 20.628 2.135 4.064 -5.206 H171 LP5 58
LP5 H172 2H17 H 0 0 N N N N N N -2.085 19.310 21.711 0.625 3.214 -5.533 H172 LP5 59
LP5 H181 1H18 H 0 0 N N N N N N -4.478 20.058 20.352 1.939 1.623 -7.026 H181 LP5 60
LP5 H182 2H18 H 0 0 N N N N N N -3.380 19.353 19.110 3.380 2.566 -6.675 H182 LP5 61
LP5 H191 1H19 H 0 0 N N N N N N -1.538 20.834 20.057 0.875 3.628 -8.086 H191 LP5 62
LP5 H192 2H19 H 0 0 N N N N N N -2.803 21.651 21.036 2.290 4.598 -7.665 H192 LP5 63
LP5 H201 1H20 H 0 0 N N N N N N -3.645 21.348 18.261 2.260 2.144 -9.501 H201 LP5 64
LP5 H202 2H20 H 0 0 N N N N N N -2.057 22.229 18.400 3.712 3.033 -9.074 H202 LP5 65
LP5 H211 1H21 H 0 0 N N N N N N -3.588 23.386 20.393 1.280 4.156 -10.557 H211 LP5 66
LP5 H212 2H21 H 0 0 N N N N N N -4.788 23.112 19.098 2.699 5.090 -10.140 H212 LP5 67
LP5 H221 1H22 H 0 0 N N N N N N -3.049 24.085 17.468 2.675 2.704 -12.043 H221 LP5 68
LP5 H222 2H22 H 0 0 N N N N N N -2.126 24.602 18.925 4.108 3.583 -11.557 H222 LP5 69
LP5 H231 1H23 H 0 0 N N N N N N -3.887 26.004 19.670 3.108 5.684 -12.593 H231 LP5 70
LP5 H232 2H23 H 0 0 N N N N N N -5.054 25.269 18.489 1.745 4.709 -13.114 H232 LP5 71
LP5 H241 1H24 H 0 0 N N N N N N -3.632 26.199 16.639 3.298 3.252 -14.454 H241 LP5 72
LP5 H242 2H24 H 0 0 N N N N N N -2.681 27.078 17.881 4.650 4.281 -13.974 H242 LP5 73
LP5 H251 1H25 H 0 0 N N N N N N -5.172 27.852 16.681 2.178 5.195 -15.529 H251 LP5 74
LP5 H252 2H25 H 0 0 N N N N N N -5.513 27.472 18.394 3.482 6.261 -15.016 H252 LP5 75
LP5 H261 1H26 H 0 0 N N N N N N -2.990 28.843 18.279 3.717 3.890 -16.928 H261 LP5 76
LP5 H262 2H26 H 0 0 N N N N N N -4.552 29.401 19.005 5.084 4.876 -16.420 H262 LP5 77
LP5 H271 1H27 H 0 0 N N N N N N -4.222 31.076 17.481 4.096 6.866 -17.535 H271 LP5 78
LP5 H272 2H27 H 0 0 N N N N N N -3.327 30.016 16.340 2.636 5.938 -17.936 H272 LP5 79
LP5 H273 3H27 H 0 0 N N N N N N -5.117 29.906 16.453 4.193 5.516 -18.669 H273 LP5 80
LP5 H3 H3 H 0 1 N N N N N N -5.440 13.587 21.399 0.008 -0.001 0.000 H3 LP5 81
LP5 H4 H4 H 0 1 N N N N N N -3.441 12.218 19.580 -1.881 0.562 1.662 H4 LP5 82
LP5 H5 H5 H 0 1 N N N N N N -4.822 11.188 22.083 -1.866 3.059 2.290 H5 LP5 83
LP5 H61 1H6 H 0 1 N N N N N N -4.569 9.376 20.581 -0.013 1.248 3.865 H61 LP5 84
LP5 H62 2H6 H 0 1 N N N N N N -3.242 9.253 21.827 -1.782 1.379 4.042 H62 LP5 85
LP5 HO6 HO6 H 0 1 N N N N N N -3.083 9.758 19.081 0.249 3.110 4.800 HO6 LP5 86
LP5 HO4 HO4 H 0 1 N N N N N N -6.163 11.606 20.219 -1.002 1.860 -0.561 HO4 LP5 87
LP5 H291 1H29 H 0 0 N N N N N N -7.173 16.216 18.185 1.620 -1.896 3.664 H291 LP5 88
LP5 H292 2H29 H 0 0 N N N N N N -6.048 15.250 17.179 2.502 -0.344 3.543 H292 LP5 89
LP5 H30 H30 H 0 1 N N N N N N -4.750 16.930 19.293 4.352 -1.513 2.302 H30 LP5 90
LP5 HO43 HO43 H 0 0 N N N N N N -5.849 18.650 18.693 3.915 -3.980 2.607 HO43 LP5 91
LP5 H311 1H31 H 0 0 N N N N N N -3.962 15.504 17.079 5.211 -3.019 4.039 H311 LP5 92
LP5 H312 2H31 H 0 0 N N N N N N -3.007 16.804 17.926 3.635 -3.197 4.758 H312 LP5 93
LP5 H321 1H32 H 0 0 N N N N N N -4.902 17.317 15.611 3.657 -0.802 5.477 H321 LP5 94
LP5 H322 2H32 H 0 0 N N N N N N -3.106 17.028 15.446 4.971 -1.754 6.139 H322 LP5 95
LP5 H331 1H33 H 0 0 N N N N N N -2.859 18.963 17.117 5.204 0.165 3.762 H331 LP5 96
LP5 H332 2H33 H 0 0 N N N N N N -4.581 19.349 16.677 6.519 -0.845 4.371 H332 LP5 97
LP5 H341 1H34 H 0 0 N N N N N N -3.295 20.689 15.241 5.021 1.299 5.971 H341 LP5 98
LP5 H342 2H34 H 0 0 N N N N N N -3.763 19.243 14.242 6.310 0.278 6.613 H342 LP5 99
LP5 H351 1H35 H 0 0 N N N N N N -1.598 18.293 14.432 6.585 2.226 4.268 H351 LP5 100
LP5 H352 2H35 H 0 0 N N N N N N -1.118 19.489 15.710 7.882 1.194 4.875 H352 LP5 101
LP5 H361 1H36 H 0 0 N N N N N N -2.006 20.782 13.239 6.426 3.331 6.526 H361 LP5 102
LP5 H362 2H36 H 0 0 N N N N N N -0.582 19.663 12.996 7.714 2.287 7.117 H362 LP5 103
LP5 H371 1H37 H 0 0 N N N N N N 0.307 20.909 15.146 9.277 3.228 5.435 H371 LP5 104
LP5 H372 2H37 H 0 0 N N N N N N 0.481 21.613 13.457 8.025 4.326 4.864 H372 LP5 105
LP5 H381 1H38 H 0 0 N N N N N N -1.549 22.984 13.903 9.199 4.265 7.699 H381 LP5 106
LP5 H382 2H38 H 0 0 N N N N N N -1.480 22.408 15.629 7.921 5.362 7.169 H382 LP5 107
LP5 H391 1H39 H 0 0 N N N N N N 1.101 23.471 14.703 9.457 6.298 5.418 H391 LP5 108
LP5 H392 2H39 H 0 0 N N N N N N 0.156 23.891 16.149 10.741 5.229 5.985 H392 LP5 109
LP5 H401 1H40 H 0 0 N N N N N N 0.204 25.162 13.453 9.349 7.383 7.668 H401 LP5 110
LP5 H402 2H40 H 0 0 N N N N N N -1.450 24.900 14.130 10.606 6.295 8.262 H402 LP5 111
LP5 H411 1H41 H 0 0 N N N N N N -0.163 25.874 16.323 10.947 8.317 5.983 H411 LP5 112
LP5 H412 2H41 H 0 0 N N N N N N 0.729 26.728 15.018 12.211 7.223 6.581 H412 LP5 113
LP5 H413 3H41 H 0 0 N N N N N N -1.056 26.894 15.144 11.561 8.489 7.636 H413 LP5 114
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LP5 O48 P45 SING N N 1
LP5 O48 HO48 SING N N 2
LP5 P45 O1 SING N N 3
LP5 P45 O47 DOUB N N 4
LP5 P45 O46 SING N N 5
LP5 O46 HO46 SING N N 6
LP5 O1 C1 SING N N 7
LP5 C1 C2 SING N N 8
LP5 C1 O5 SING N N 9
LP5 C1 H1 SING N N 10
LP5 C2 C3 SING N N 11
LP5 C2 N2 SING N N 12
LP5 C2 H2 SING N N 13
LP5 N2 C7 SING N N 14
LP5 N2 HN2 SING N N 15
LP5 C7 O7 DOUB N N 16
LP5 C7 C8 SING N N 17
LP5 C8 C16 SING N N 18
LP5 C8 H81 SING N N 19
LP5 C8 H82 SING N N 20
LP5 C16 C17 SING N N 21
LP5 C16 O44 SING N N 22
LP5 C16 H16 SING N N 23
LP5 O44 HO44 SING N N 24
LP5 C17 C18 SING N N 25
LP5 C17 H171 SING N N 26
LP5 C17 H172 SING N N 27
LP5 C18 C19 SING N N 28
LP5 C18 H181 SING N N 29
LP5 C18 H182 SING N N 30
LP5 C19 C20 SING N N 31
LP5 C19 H191 SING N N 32
LP5 C19 H192 SING N N 33
LP5 C20 C21 SING N N 34
LP5 C20 H201 SING N N 35
LP5 C20 H202 SING N N 36
LP5 C21 C22 SING N N 37
LP5 C21 H211 SING N N 38
LP5 C21 H212 SING N N 39
LP5 C22 C23 SING N N 40
LP5 C22 H221 SING N N 41
LP5 C22 H222 SING N N 42
LP5 C23 C24 SING N N 43
LP5 C23 H231 SING N N 44
LP5 C23 H232 SING N N 45
LP5 C24 C25 SING N N 46
LP5 C24 H241 SING N N 47
LP5 C24 H242 SING N N 48
LP5 C25 C26 SING N N 49
LP5 C25 H251 SING N N 50
LP5 C25 H252 SING N N 51
LP5 C26 C27 SING N N 52
LP5 C26 H261 SING N N 53
LP5 C26 H262 SING N N 54
LP5 C27 H271 SING N N 55
LP5 C27 H272 SING N N 56
LP5 C27 H273 SING N N 57
LP5 C3 O3 SING N N 58
LP5 C3 C4 SING N N 59
LP5 C3 H3 SING N N 60
LP5 C4 O4 SING N N 61
LP5 C4 C5 SING N N 62
LP5 C4 H4 SING N N 63
LP5 C5 C6 SING N N 64
LP5 C5 O5 SING N N 65
LP5 C5 H5 SING N N 66
LP5 C6 O6 SING N N 67
LP5 C6 H61 SING N N 68
LP5 C6 H62 SING N N 69
LP5 O6 HO6 SING N N 70
LP5 O4 HO4 SING N N 71
LP5 O3 C28 SING N N 72
LP5 C28 C29 SING N N 73
LP5 C28 O42 DOUB N N 74
LP5 C29 C30 SING N N 75
LP5 C29 H291 SING N N 76
LP5 C29 H292 SING N N 77
LP5 C30 C31 SING N N 78
LP5 C30 O43 SING N N 79
LP5 C30 H30 SING N N 80
LP5 O43 HO43 SING N N 81
LP5 C31 C32 SING N N 82
LP5 C31 H311 SING N N 83
LP5 C31 H312 SING N N 84
LP5 C32 C33 SING N N 85
LP5 C32 H321 SING N N 86
LP5 C32 H322 SING N N 87
LP5 C33 C34 SING N N 88
LP5 C33 H331 SING N N 89
LP5 C33 H332 SING N N 90
LP5 C34 C35 SING N N 91
LP5 C34 H341 SING N N 92
LP5 C34 H342 SING N N 93
LP5 C35 C36 SING N N 94
LP5 C35 H351 SING N N 95
LP5 C35 H352 SING N N 96
LP5 C36 C37 SING N N 97
LP5 C36 H361 SING N N 98
LP5 C36 H362 SING N N 99
LP5 C37 C38 SING N N 100
LP5 C37 H371 SING N N 101
LP5 C37 H372 SING N N 102
LP5 C38 C39 SING N N 103
LP5 C38 H381 SING N N 104
LP5 C38 H382 SING N N 105
LP5 C39 C40 SING N N 106
LP5 C39 H391 SING N N 107
LP5 C39 H392 SING N N 108
LP5 C40 C41 SING N N 109
LP5 C40 H401 SING N N 110
LP5 C40 H402 SING N N 111
LP5 C41 H411 SING N N 112
LP5 C41 H412 SING N N 113
LP5 C41 H413 SING N N 114
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LP5 SMILES ACDLabs 10.04 O=P(OC1OC(C(O)C(OC(=O)CC(O)CCCCCCCCCCC)C1NC(=O)CC(O)CCCCCCCCCCC)CO)(O)O
LP5 SMILES_CANONICAL CACTVS 3.341 CCCCCCCCCCC[C@@H](O)CC(=O)N[C@H]1[C@H](O[C@H](CO)[C@@H](O)[C@@H]1OC(=O)C[C@H](O)CCCCCCCCCCC)O[P](O)(O)=O
LP5 SMILES CACTVS 3.341 CCCCCCCCCCC[CH](O)CC(=O)N[CH]1[CH](O[CH](CO)[CH](O)[CH]1OC(=O)C[CH](O)CCCCCCCCCCC)O[P](O)(O)=O
LP5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCC[C@H](CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1OP(=O)(O)O)CO)O)OC(=O)C[C@@H](CCCCCCCCCCC)O)O
LP5 SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCC(CC(=O)NC1C(C(C(OC1OP(=O)(O)O)CO)O)OC(=O)CC(CCCCCCCCCCC)O)O
LP5 InChI InChI 1.03 InChI=1S/C34H66NO12P/c1-3-5-7-9-11-13-15-17-19-21-26(37)23-29(39)35-31-33(32(41)28(25-36)45-34(31)47-48(42,43)44)46-30(40)24-27(38)22-20-18-16-14-12-10-8-6-4-2/h26-28,31-34,36-38,41H,3-25H2,1-2H3,(H,35,39)(H2,42,43,44)/t26-,27-,28-,31-,32-,33-,34-/m1/s1
LP5 InChIKey InChI 1.03 HEHQDWUWJVPREQ-XQJZMFRCSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LP5 "SYSTEMATIC NAME" ACDLabs 10.04 2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-alpha-D-glucopyranose
LP5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R,6R)-3-hydroxy-2-(hydroxymethyl)-5-[[(3R)-3-hydroxytetradecanoyl]amino]-6-phosphonooxy-oxan-4-yl] (3R)-3-hydroxytetradecanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LP5 'Create component' 2006-12-26 RCSB
LP5 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LP5 O48 O 14.691 11.393 1
LP5 P45 P 14.691 9.893 2
LP5 O46 O 13.191 9.893 3
LP5 O47 O 16.191 9.893 4
LP5 O1 O 14.691 8.393 5
LP5 C1 C 13.392 7.643 6
LP5 C2 C 13.392 6.143 7
LP5 N2 N 14.691 5.393 8
LP5 C7 C 15.990 6.143 9
LP5 C8 C 17.290 5.393 10
LP5 C16 C 18.588 6.143 11
LP5 O44 O 18.588 7.643 12
LP5 C17 C 19.887 5.393 13
LP5 C18 C 21.187 6.143 14
LP5 C19 C 22.486 5.393 15
LP5 C20 C 23.785 6.143 16
LP5 C21 C 25.084 5.393 17
LP5 C22 C 26.383 6.143 18
LP5 C23 C 27.682 5.393 19
LP5 C24 C 28.981 6.143 20
LP5 C25 C 30.280 5.393 21
LP5 C26 C 31.579 6.143 22
LP5 C27 C 32.878 5.393 23
LP5 O7 O 15.990 7.643 24
LP5 C3 C 12.093 5.393 25
LP5 C4 C 10.794 6.143 26
LP5 C5 C 10.794 7.643 27
LP5 O5 O 12.093 8.393 28
LP5 C6 C 9.495 8.393 29
LP5 O6 O 9.495 9.893 30
LP5 O4 O 9.495 5.393 31
LP5 O3 O 12.093 3.893 32
LP5 C28 C 10.794 3.143 33
LP5 O42 O 9.495 3.893 34
LP5 C29 C 10.794 1.643 35
LP5 C30 C 9.495 0.892 36
LP5 O43 O 8.196 1.643 37
LP5 C31 C 9.495 -0.608 38
LP5 C32 C 8.196 -1.357 39
LP5 C33 C 8.196 -2.857 40
LP5 C34 C 6.897 -3.607 41
LP5 C35 C 6.897 -5.107 42
LP5 C36 C 5.598 -5.857 43
LP5 C37 C 5.598 -7.357 44
LP5 C38 C 4.299 -8.107 45
LP5 C39 C 4.299 -9.607 46
LP5 C40 C 3.000 -10.357 47
LP5 C41 C 3.000 -11.857 48
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LP5 O48 P45 SINGLE NONE 1
LP5 P45 O1 SINGLE NONE 2
LP5 P45 O47 DOUBLE NONE 3
LP5 P45 O46 SINGLE NONE 4
LP5 C1 O1 SINGLE BEGINDASH 5
LP5 C1 C2 SINGLE NONE 6
LP5 C1 O5 SINGLE NONE 7
LP5 C2 C3 SINGLE NONE 8
LP5 C2 N2 SINGLE BEGINDASH 9
LP5 N2 C7 SINGLE NONE 10
LP5 C7 O7 DOUBLE NONE 11
LP5 C7 C8 SINGLE NONE 12
LP5 C8 C16 SINGLE NONE 13
LP5 C16 C17 SINGLE NONE 14
LP5 C16 O44 SINGLE BEGINDASH 15
LP5 C17 C18 SINGLE NONE 16
LP5 C18 C19 SINGLE NONE 17
LP5 C19 C20 SINGLE NONE 18
LP5 C20 C21 SINGLE NONE 19
LP5 C21 C22 SINGLE NONE 20
LP5 C22 C23 SINGLE NONE 21
LP5 C23 C24 SINGLE NONE 22
LP5 C24 C25 SINGLE NONE 23
LP5 C25 C26 SINGLE NONE 24
LP5 C26 C27 SINGLE NONE 25
LP5 C3 O3 SINGLE BEGINWEDGE 26
LP5 C3 C4 SINGLE NONE 27
LP5 C4 O4 SINGLE BEGINDASH 28
LP5 C4 C5 SINGLE NONE 29
LP5 C5 C6 SINGLE BEGINWEDGE 30
LP5 C5 O5 SINGLE NONE 31
LP5 C6 O6 SINGLE NONE 32
LP5 O3 C28 SINGLE NONE 33
LP5 C28 C29 SINGLE NONE 34
LP5 C28 O42 DOUBLE NONE 35
LP5 C29 C30 SINGLE NONE 36
LP5 C30 C31 SINGLE NONE 37
LP5 C30 O43 SINGLE BEGINWEDGE 38
LP5 C31 C32 SINGLE NONE 39
LP5 C32 C33 SINGLE NONE 40
LP5 C33 C34 SINGLE NONE 41
LP5 C34 C35 SINGLE NONE 42
LP5 C35 C36 SINGLE NONE 43
LP5 C36 C37 SINGLE NONE 44
LP5 C37 C38 SINGLE NONE 45
LP5 C38 C39 SINGLE NONE 46
LP5 C39 C40 SINGLE NONE 47
LP5 C40 C41 SINGLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LP5 MurckoScaffold S1 scaffold C1CCOCC1 InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2 DHXVGJBLRPWPCS-UHFFFAOYSA-N
LP5 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LP5 phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
LP5 pyranose F3 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LP5 C1 S1 1
LP5 C2 S1 1
LP5 C3 S1 1
LP5 C4 S1 1
LP5 C5 S1 1
LP5 O5 S1 1
LP5 N2 F1 1
LP5 C7 F1 1
LP5 O7 F1 1
LP5 C8 F1 1
LP5 O48 F2 1
LP5 P45 F2 1
LP5 O47 F2 1
LP5 O1 F2 1
LP5 O46 F2 1
LP5 C4 F3 1
LP5 C5 F3 1
LP5 O5 F3 1
LP5 C1 F3 1
LP5 C2 F3 1
LP5 C3 F3 1
LP5 O1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LP5
_pdbe_chem_comp_rdkit_properties.exactmw 711.432
_pdbe_chem_comp_rdkit_properties.amw 711.871
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 37
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 48
_pdbe_chem_comp_rdkit_properties.NumAtoms 114
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.941
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 380.611
_pdbe_chem_comp_rdkit_properties.tpsa 212.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.914
_pdbe_chem_comp_rdkit_properties.CrippenMR 181.629
_pdbe_chem_comp_rdkit_properties.chi0v 23.688
_pdbe_chem_comp_rdkit_properties.chi1v 12.633
_pdbe_chem_comp_rdkit_properties.chi2v 3.889
_pdbe_chem_comp_rdkit_properties.chi3v 3.889
_pdbe_chem_comp_rdkit_properties.chi4v 2.353
_pdbe_chem_comp_rdkit_properties.chi0n 88.793
_pdbe_chem_comp_rdkit_properties.chi1n 43.570
_pdbe_chem_comp_rdkit_properties.chi2n 3.499
_pdbe_chem_comp_rdkit_properties.chi3n 3.499
_pdbe_chem_comp_rdkit_properties.chi4n 2.026
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.150
_pdbe_chem_comp_rdkit_properties.kappa1 7.734
_pdbe_chem_comp_rdkit_properties.kappa2 26.630
_pdbe_chem_comp_rdkit_properties.kappa3 21.153
_pdbe_chem_comp_rdkit_properties.Phi 4.291
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LP5 UniChem ChEBI 16942
LP5 UniChem ZINC ZINC000058650130
LP5 UniChem SureChEMBL SCHEMBL10352307
LP5 UniChem PubChem 123907
LP5 UniChem LipidMaps LMSL01020001
LP5 UniChem MetaboLights MTBLC16942
LP5 UniChem BRENDA 183511
LP5 UniChem BRENDA 204309
LP5 UniChem BRENDA 67177
LP5 UniChem Nikkaji J425.986F
LP5 UniChem ACTor 86559-73-1
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LP5 O48 -2.073 6.769 0.302 ETKDGv3 1
LP5 P45 -0.810 5.644 0.332 ETKDGv3 2
LP5 O46 0.072 5.849 1.761 ETKDGv3 3
LP5 O47 0.093 5.887 -0.857 ETKDGv3 4
LP5 O1 -1.472 4.071 0.253 ETKDGv3 5
LP5 C1 -0.439 3.108 0.354 ETKDGv3 6
LP5 C2 -0.920 1.718 -0.180 ETKDGv3 7
LP5 N2 -2.385 1.638 -0.267 ETKDGv3 8
LP5 C7 -3.055 0.844 -1.256 ETKDGv3 9
LP5 C8 -4.553 0.794 -1.290 ETKDGv3 10
LP5 C16 -5.122 1.998 -2.063 ETKDGv3 11
LP5 O44 -4.854 3.185 -1.359 ETKDGv3 12
LP5 C17 -6.635 1.854 -2.328 ETKDGv3 13
LP5 C18 -7.500 1.998 -1.060 ETKDGv3 14
LP5 C19 -8.997 1.757 -1.350 ETKDGv3 15
LP5 C20 -9.492 0.367 -0.913 ETKDGv3 16
LP5 C21 -8.848 -0.775 -1.712 ETKDGv3 17
LP5 C22 -9.488 -2.123 -1.359 ETKDGv3 18
LP5 C23 -8.823 -3.269 -2.135 ETKDGv3 19
LP5 C24 -9.458 -4.639 -1.815 ETKDGv3 20
LP5 C25 -10.370 -5.176 -2.935 ETKDGv3 21
LP5 C26 -11.640 -4.345 -3.184 ETKDGv3 22
LP5 C27 -12.621 -4.396 -2.013 ETKDGv3 23
LP5 O7 -2.393 0.214 -2.126 ETKDGv3 24
LP5 C3 -0.388 0.580 0.716 ETKDGv3 25
LP5 C4 -0.785 0.814 2.193 ETKDGv3 26
LP5 C5 -0.806 2.329 2.536 ETKDGv3 27
LP5 O5 0.067 3.047 1.684 ETKDGv3 28
LP5 C6 -0.401 2.581 3.993 ETKDGv3 29
LP5 O6 0.946 2.248 4.190 ETKDGv3 30
LP5 O4 -2.057 0.270 2.446 ETKDGv3 31
LP5 O3 1.038 0.521 0.628 ETKDGv3 32
LP5 C28 1.726 -0.015 -0.465 ETKDGv3 33
LP5 O42 1.104 -0.555 -1.420 ETKDGv3 34
LP5 C29 3.222 0.008 -0.470 ETKDGv3 35
LP5 C30 3.790 -1.193 0.317 ETKDGv3 36
LP5 O43 3.412 -1.161 1.673 ETKDGv3 37
LP5 C31 5.321 -1.337 0.171 ETKDGv3 38
LP5 C32 6.125 -0.175 0.777 ETKDGv3 39
LP5 C33 7.631 -0.401 0.596 ETKDGv3 40
LP5 C34 8.438 0.755 1.199 ETKDGv3 41
LP5 C35 9.944 0.529 1.017 ETKDGv3 42
LP5 C36 10.753 1.676 1.638 ETKDGv3 43
LP5 C37 12.256 1.585 1.327 ETKDGv3 44
LP5 C38 12.952 0.372 1.980 ETKDGv3 45
LP5 C39 13.204 -0.763 0.975 ETKDGv3 46
LP5 C40 13.844 -1.974 1.663 ETKDGv3 47
LP5 C41 14.106 -3.099 0.666 ETKDGv3 48
LP5 HO48 -2.610 6.525 -0.493 ETKDGv3 49
LP5 HO46 -0.595 5.742 2.485 ETKDGv3 50
LP5 H1 0.419 3.390 -0.300 ETKDGv3 51
LP5 H2 -0.502 1.591 -1.203 ETKDGv3 52
LP5 HN2 -2.968 2.066 0.487 ETKDGv3 53
LP5 H81 -4.874 -0.153 -1.778 ETKDGv3 54
LP5 H82 -4.934 0.783 -0.248 ETKDGv3 55
LP5 H16 -4.612 2.033 -3.055 ETKDGv3 56
LP5 HO44 -4.973 3.932 -2.001 ETKDGv3 57
LP5 H171 -6.827 0.878 -2.821 ETKDGv3 58
LP5 H172 -6.938 2.643 -3.051 ETKDGv3 59
LP5 H181 -7.379 3.033 -0.672 ETKDGv3 60
LP5 H182 -7.151 1.310 -0.262 ETKDGv3 61
LP5 H191 -9.586 2.510 -0.782 ETKDGv3 62
LP5 H192 -9.232 1.921 -2.425 ETKDGv3 63
LP5 H201 -9.293 0.225 0.172 ETKDGv3 64
LP5 H202 -10.594 0.336 -1.060 ETKDGv3 65
LP5 H211 -7.763 -0.823 -1.478 ETKDGv3 66
LP5 H212 -8.975 -0.583 -2.800 ETKDGv3 67
LP5 H221 -10.572 -2.083 -1.594 ETKDGv3 68
LP5 H222 -9.375 -2.307 -0.267 ETKDGv3 69
LP5 H231 -8.863 -3.061 -3.227 ETKDGv3 70
LP5 H232 -7.749 -3.302 -1.850 ETKDGv3 71
LP5 H241 -8.635 -5.376 -1.687 ETKDGv3 72
LP5 H242 -10.000 -4.622 -0.846 ETKDGv3 73
LP5 H251 -9.786 -5.225 -3.881 ETKDGv3 74
LP5 H252 -10.664 -6.219 -2.687 ETKDGv3 75
LP5 H261 -11.380 -3.292 -3.418 ETKDGv3 76
LP5 H262 -12.152 -4.759 -4.080 ETKDGv3 77
LP5 H271 -12.201 -3.891 -1.120 ETKDGv3 78
LP5 H272 -13.559 -3.873 -2.296 ETKDGv3 79
LP5 H273 -12.867 -5.449 -1.759 ETKDGv3 80
LP5 H3 -0.807 -0.394 0.377 ETKDGv3 81
LP5 H4 -0.036 0.292 2.834 ETKDGv3 82
LP5 H5 -1.844 2.723 2.436 ETKDGv3 83
LP5 H61 -1.046 1.977 4.671 ETKDGv3 84
LP5 H62 -0.554 3.657 4.230 ETKDGv3 85
LP5 HO6 1.137 2.428 5.147 ETKDGv3 86
LP5 HO4 -1.944 -0.714 2.506 ETKDGv3 87
LP5 H291 3.586 -0.025 -1.520 ETKDGv3 88
LP5 H292 3.560 0.966 -0.023 ETKDGv3 89
LP5 H30 3.349 -2.114 -0.125 ETKDGv3 90
LP5 HO43 3.594 -0.251 2.022 ETKDGv3 91
LP5 H311 5.571 -1.432 -0.909 ETKDGv3 92
LP5 H312 5.629 -2.284 0.666 ETKDGv3 93
LP5 H321 5.904 -0.091 1.863 ETKDGv3 94
LP5 H322 5.845 0.778 0.280 ETKDGv3 95
LP5 H331 7.923 -1.352 1.095 ETKDGv3 96
LP5 H332 7.863 -0.484 -0.488 ETKDGv3 97
LP5 H341 8.146 1.706 0.701 ETKDGv3 98
LP5 H342 8.208 0.839 2.284 ETKDGv3 99
LP5 H351 10.223 -0.427 1.509 ETKDGv3 100
LP5 H352 10.175 0.457 -0.069 ETKDGv3 101
LP5 H361 10.599 1.690 2.740 ETKDGv3 102
LP5 H362 10.379 2.642 1.235 ETKDGv3 103
LP5 H371 12.416 1.599 0.226 ETKDGv3 104
LP5 H372 12.731 2.510 1.723 ETKDGv3 105
LP5 H381 13.935 0.702 2.383 ETKDGv3 106
LP5 H382 12.357 -0.005 2.841 ETKDGv3 107
LP5 H391 13.883 -0.395 0.174 ETKDGv3 108
LP5 H392 12.249 -1.074 0.504 ETKDGv3 109
LP5 H401 13.169 -2.352 2.461 ETKDGv3 110
LP5 H402 14.808 -1.675 2.129 ETKDGv3 111
LP5 H411 13.153 -3.435 0.204 ETKDGv3 112
LP5 H412 14.569 -3.961 1.192 ETKDGv3 113
LP5 H413 14.799 -2.756 -0.131 ETKDGv3 114
#