Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : LDL    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C17 C16 C C sing 1.54 N N
2 C17 N6 C N sing 1.47 N N
3 C16 N5 C N sing 1.47 N N
4 N6 C15 N C sing 1.37 N N
5 N5 C15 N C sing 1.37 N N
6 C15 N4 C N doub 1.31 N N
7 C11 C10 C C doub 1.38 N Y
8 C11 C14 C C sing 1.4 N Y
9 C10 C9 C C sing 1.39 N Y
10 N4 C14 N C sing 1.37 N N
11 N3 N2 N N doub 1.29 N Y
12 N3 C8 N C sing 1.34 N Y
13 C14 C13 C C doub 1.4 N Y
14 N2 N1 N N sing 1.29 N Y
15 C9 C8 C C sing 1.48 N N
16 C9 C12 C C doub 1.4 N Y
17 C8 C18 C C doub 1.36 N Y
18 C13 C12 C C sing 1.38 N Y
19 C5 C4 C C doub 1.38 N Y
20 C5 C6 C C sing 1.38 N Y
21 N1 C18 N C sing 1.35 N Y
22 N1 C7 N C sing 1.46 N N
23 C4 C1 C C sing 1.4 N Y
24 O1 C19 O C doub 1.22 N N
25 C7 C6 C C sing 1.51 N N
26 C6 C3 C C doub 1.38 N Y
27 C1 C19 C C sing 1.48 N N
28 C1 C2 C C doub 1.4 N Y
29 C19 N7 C N sing 1.35 N N
30 C3 C2 C C sing 1.38 N Y
31 N7 N8 N N sing 1.37 N N
32 C4 H1 C H sing 1.08 N N
33 C5 H2 C H sing 1.08 N N
34 C7 H3 C H sing 1.09 N N
35 C7 H4 C H sing 1.09 N N
36 C10 H5 C H sing 1.08 N N
37 C13 H6 C H sing 1.08 N N
38 C17 H7 C H sing 1.09 N N
39 C17 H8 C H sing 1.09 N N
40 C2 H9 C H sing 1.08 N N
41 C3 H10 C H sing 1.08 N N
42 C11 H11 C H sing 1.08 N N
43 C12 H12 C H sing 1.08 N N
44 N5 H13 N H sing 0.97 N N
45 C16 H14 C H sing 1.09 N N
46 C16 H15 C H sing 1.09 N N
47 N6 H16 N H sing 0.97 N N
48 C18 H17 C H sing 1.08 N N
49 N7 H18 N H sing 0.97 N N
50 N8 H19 N H sing 1.01 N N
51 N8 H20 N H sing 1.01 N N