Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LDL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 1.293 1.795 0.745
2 N3 N N2 N Y N 0 0.157 1.97 -1.029
3 C4 C C1 N Y N 0 5.55 0.924 -0.255
4 C5 C C2 N Y N 0 4.504 1.651 0.275
5 C6 C C3 N Y N 0 3.572 1.035 1.091
6 C7 C C4 N N N 0 2.432 1.836 1.665
7 C8 C C5 N Y N 0 -0.692 1.518 -0.09
8 C10 C C6 N Y N 0 -2.734 1.372 -1.513
9 C13 C C7 N Y N 0 -4.218 0.448 0.651
10 C15 C C8 N N N 0 -6.654 -0.763 -0.252
11 C17 C C9 N N N 0 -6.792 -2.782 0.861
12 C1 C C10 N Y N 0 5.666 -0.437 0.035
13 C2 C C11 N Y N 0 4.725 -1.051 0.863
14 C3 C C12 N Y N 0 3.681 -0.313 1.381
15 N2 N N3 N Y N 0 1.318 2.124 -0.498
16 C9 C C13 N Y N 0 -2.132 1.204 -0.267
17 C11 C C14 N Y N 0 -4.07 1.086 -1.678
18 C12 C C15 N Y N 0 -2.882 0.74 0.814
19 C14 C C16 N Y N 0 -4.824 0.626 -0.595
20 N4 N N4 N N N 0 -6.153 0.341 -0.757
21 N5 N N5 N N N 0 -7.967 -1.119 -0.37
22 C16 C C17 N N N 0 -8.178 -2.405 0.309
23 N6 N N6 N N N 0 -5.916 -1.679 0.441
24 C18 C C18 N Y N 0 0.038 1.397 1.057
25 C19 C C19 N N N 0 6.781 -1.224 -0.534
26 N7 N N7 N N N 0 6.891 -2.537 -0.253
27 N8 N N8 N N N 0 7.921 -3.265 -0.778
28 O1 O O1 N N N 0 7.598 -0.686 -1.255
29 H1 H H1 N N N 0 6.274 1.405 -0.895
30 H2 H H2 N N N 0 4.413 2.704 0.052
31 H3 H H3 N N N 0 2.748 2.87 1.805
32 H4 H H4 N N N 0 2.138 1.413 2.626
33 H5 H H5 N N N 0 -2.152 1.732 -2.349
34 H6 H H6 N N N 0 -4.798 0.088 1.488
35 H7 H H7 N N N 0 -6.822 -2.855 1.948
36 H8 H H8 N N N 0 -6.451 -3.721 0.425
37 H9 H H9 N N N 0 4.81 -2.103 1.091
38 H10 H H10 N N N 0 2.95 -0.788 2.019
39 H11 H H11 N N N 0 -4.536 1.217 -2.643
40 H12 H H12 N N N 0 -2.413 0.602 1.777
41 H13 H H13 N N N 0 -8.65 -0.606 -0.829
42 H14 H H14 N N N 0 -8.524 -3.16 -0.397
43 H15 H H15 N N N 0 -8.893 -2.288 1.123
44 H16 H H16 N N N 0 -4.968 -1.61 0.631
45 H17 H H17 N N N 0 -0.314 1.054 2.019
46 H20 H H20 N N N 0 7.872 -4.228 -0.481
47 H18 H H18 N N N 0 6.238 -2.966 0.323
48 H19 H H19 N N N 0 8.811 -2.856 -0.537