Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : L3J    

Bonds between two atoms of the molecule

Total Number of Bonds: 90


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C06 N07 C N sing 1.47 N N
2 C06 C04 C C sing 1.53 N N
3 N07 C08 N C sing 1.47 N N
4 C24 C25 C C sing 1.53 N N
5 C24 C23 C C sing 1.53 N N
6 C25 C26 C C sing 1.51 N N
7 C31 C26 C C doub 1.38 N Y
8 C31 C30 C C sing 1.38 N Y
9 O41 S38 O S doub 1.42 N N
10 C05 C04 C C sing 1.53 N N
11 C05 C30 C C sing 1.51 N N
12 C04 N03 C N sing 1.48 N N
13 N03 C02 N C sing 1.37 N N
14 C26 C27 C C sing 1.38 N Y
15 C09 C11 C C sing 1.53 N N
16 C09 C08 C C sing 1.53 N N
17 C09 O10 C O sing 1.43 N N
18 C30 C29 C C doub 1.38 N Y
19 C08 C12 C C sing 1.51 N N
20 C22 C23 C C sing 1.53 N N
21 C22 C21 C C sing 1.51 N N
22 C20 C21 C C doub 1.38 N Y
23 C20 C19 C C sing 1.4 N Y
24 C21 C32 C C sing 1.38 N Y
25 O39 S38 O S doub 1.42 N N
26 C02 C19 C C sing 1.48 N N
27 C02 O01 C O doub 1.22 N N
28 S38 N34 S N sing 1.66 N N
29 S38 C40 S C sing 1.81 N N
30 C19 C42 C C doub 1.39 N Y
31 N13 C12 N C sing 1.35 N N
32 N13 C14 N C doub 1.3 N N
33 C16 C15 C C sing 1.53 N N
34 C32 C33 C C doub 1.39 N Y
35 C12 O18 C O doub 1.21 N N
36 C42 C33 C C sing 1.39 N Y
37 C33 N34 C N sing 1.4 N N
38 C27 C28 C C doub 1.38 N Y
39 C29 C28 C C sing 1.38 N Y
40 C15 C14 C C sing 1.51 N N
41 C15 C17 C C sing 1.53 N N
42 N34 C35 N C sing 1.46 N N
43 C35 C36 C C sing 1.53 N N
44 C36 C37 C C sing 1.53 N N
45 C15 H1 C H sing 1.09 N N
46 C17 H2 C H sing 1.09 N N
47 C17 H3 C H sing 1.09 N N
48 C17 H4 C H sing 1.09 N N
49 C20 H5 C H sing 1.08 N N
50 C22 H6 C H sing 1.09 N N
51 C22 H7 C H sing 1.09 N N
52 C24 H8 C H sing 1.09 N N
53 C24 H9 C H sing 1.09 N N
54 C28 H10 C H sing 1.08 N N
55 N03 H11 N H sing 0.97 N N
56 C04 H12 C H sing 1.09 N N
57 C05 H13 C H sing 1.09 N N
58 C05 H14 C H sing 1.09 N N
59 C06 H15 C H sing 1.09 N N
60 C06 H16 C H sing 1.09 N N
61 N07 H17 N H sing 1.01 N N
62 C08 H19 C H sing 1.09 N N
63 C09 H20 C H sing 1.09 N N
64 O10 H21 O H sing 0.97 N N
65 C11 H22 C H sing 1.09 N N
66 C11 H23 C H sing 1.09 N N
67 C11 H24 C H sing 1.09 N N
68 C14 H25 C H sing 1.08 N N
69 C16 H26 C H sing 1.09 N N
70 C16 H27 C H sing 1.09 N N
71 C16 H28 C H sing 1.09 N N
72 C23 H29 C H sing 1.09 N N
73 C23 H30 C H sing 1.09 N N
74 C25 H31 C H sing 1.09 N N
75 C25 H32 C H sing 1.09 N N
76 C27 H33 C H sing 1.08 N N
77 C29 H34 C H sing 1.08 N N
78 C31 H35 C H sing 1.08 N N
79 C32 H36 C H sing 1.08 N N
80 C35 H37 C H sing 1.09 N N
81 C35 H38 C H sing 1.09 N N
82 C36 H39 C H sing 1.09 N N
83 C36 H40 C H sing 1.09 N N
84 C37 H41 C H sing 1.09 N N
85 C37 H42 C H sing 1.09 N N
86 C37 H43 C H sing 1.09 N N
87 C40 H44 C H sing 1.09 N N
88 C40 H45 C H sing 1.09 N N
89 C40 H46 C H sing 1.09 N N
90 C42 H47 C H sing 1.08 N N