data_L3J
#
_chem_comp.id L3J
_chem_comp.name
(E)-N-(2-methylpropylidene)-N~2~-{[(4S)-17-[(methylsulfonyl)(propyl)amino]-2-oxo-3-azatricyclo[13.3.1.1~6,10~]icosa-1(19),6(20),7,9,15,17-hexaen-4-yl]methyl}-D-threoninamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H46 N4 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-02-05
_chem_comp.pdbx_modified_date 2019-10-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 598.796
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code L3J
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6NV7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L3J C15 C1 C 0 1 N N N N N N 41.395 -20.294 100.116 -7.237 1.897 -2.719 C15 L3J 1
L3J C17 C2 C 0 1 N N N N N N 41.543 -21.188 101.384 -8.619 2.488 -2.435 C17 L3J 2
L3J C20 C3 C 0 1 Y N N N N N 34.666 -11.899 99.122 2.302 -1.441 0.264 C20 L3J 3
L3J C21 C4 C 0 1 Y N N N N N 34.022 -10.653 99.195 3.553 -1.739 -0.229 C21 L3J 4
L3J C22 C5 C 0 1 N N N N N N 32.509 -10.553 98.903 3.943 -3.176 -0.459 C22 L3J 5
L3J C24 C6 C 0 1 N N N N N N 31.444 -12.569 97.606 1.658 -4.142 -0.751 C24 L3J 6
L3J C26 C7 C 0 1 Y N N N N N 32.050 -14.919 98.525 -0.677 -4.682 -0.106 C26 L3J 7
L3J C28 C8 C 0 1 Y N N N N N 32.623 -16.014 100.614 -3.025 -4.743 -0.572 C28 L3J 8
L3J O01 O1 O 0 1 N N N N N N 37.606 -13.572 100.099 0.117 1.316 0.947 O01 L3J 9
L3J C02 C9 C 0 1 N N N N N N 36.641 -13.383 99.290 0.552 0.181 0.933 C02 L3J 10
L3J N03 N1 N 0 1 N N N N N N 36.273 -14.450 98.498 -0.206 -0.871 1.372 N03 L3J 11
L3J C04 C10 C 0 1 N N S N N N 36.774 -15.854 98.469 -1.670 -0.673 1.287 C04 L3J 12
L3J C05 C11 C 0 1 N N N N N N 35.510 -16.710 98.133 -2.365 -1.918 1.840 C05 L3J 13
L3J C06 C12 C 0 1 N N N N N N 38.019 -16.197 97.519 -2.071 0.551 2.112 C06 L3J 14
L3J N07 N2 N 0 1 N N N N N N 39.176 -15.303 97.560 -3.516 0.778 1.981 N07 L3J 15
L3J C08 C13 C 0 1 N N R N N N 40.034 -15.264 98.765 -3.819 1.567 0.780 C08 L3J 16
L3J C09 C14 C 0 1 N N S N N N 41.418 -14.545 98.525 -3.957 3.043 1.161 C09 L3J 17
L3J O10 O2 O 0 1 N N N N N N 41.465 -13.502 99.433 -5.005 3.191 2.121 O10 L3J 18
L3J C11 C15 C 0 1 N N N N N N 42.635 -15.477 98.722 -2.641 3.539 1.763 C11 L3J 19
L3J C12 C16 C 0 1 N N N N N N 40.204 -16.546 99.681 -5.110 1.083 0.172 C12 L3J 20
L3J N13 N3 N 0 1 N N N N N N 40.714 -17.820 99.386 -5.589 1.665 -0.946 N13 L3J 21
L3J C14 C17 C 0 1 N N N N N N 40.806 -18.882 100.467 -6.702 1.247 -1.470 C14 L3J 22
L3J C16 C18 C 0 1 N N N N N N 42.752 -20.206 99.422 -7.348 0.852 -3.831 C16 L3J 23
L3J O18 O3 O 0 1 N N N N N N 39.841 -16.348 100.872 -5.718 0.169 0.689 O18 L3J 24
L3J C19 C19 C 0 1 Y N N N N N 36.055 -12.006 99.363 1.919 -0.108 0.439 C19 L3J 25
L3J C23 C20 C 0 1 N N N N N N 31.589 -11.793 98.917 2.890 -4.102 0.155 C23 L3J 26
L3J C25 C21 C 0 1 N N N N N N 31.119 -14.065 97.659 0.706 -5.249 -0.290 C25 L3J 27
L3J C27 C22 C 0 1 Y N N N N N 31.745 -15.239 99.860 -1.755 -5.258 -0.752 C27 L3J 28
L3J C29 C23 C 0 1 Y N N N N N 33.821 -16.487 100.075 -3.219 -3.660 0.263 C29 L3J 29
L3J C30 C24 C 0 1 Y N N N N N 34.188 -16.202 98.749 -2.143 -3.088 0.916 C30 L3J 30
L3J C31 C25 C 0 1 Y N N N N N 33.266 -15.412 98.033 -0.871 -3.591 0.720 C31 L3J 31
L3J C32 C26 C 0 1 Y N N N N N 34.802 -9.546 99.545 4.445 -0.725 -0.525 C32 L3J 32
L3J C33 C27 C 0 1 Y N N N N N 36.194 -9.617 99.812 4.083 0.603 -0.328 C33 L3J 33
L3J N34 N4 N 0 1 N N N N N N 36.937 -8.436 100.159 4.992 1.624 -0.615 N34 L3J 34
L3J C35 C28 C 0 1 N N N N N N 37.830 -8.499 101.356 4.506 2.966 -0.945 C35 L3J 35
L3J C36 C29 C 0 1 N N N N N N 37.045 -8.722 102.702 4.259 3.750 0.346 C36 L3J 36
L3J C37 C30 C 0 1 N N N N N N 37.758 -8.339 103.993 3.751 5.152 0.002 C37 L3J 37
L3J S38 S1 S 0 1 N N N N N N 36.766 -7.004 99.312 6.619 1.317 -0.584 S38 L3J 38
L3J O39 O4 O 0 1 N N N N N N 38.008 -6.329 99.283 6.752 0.226 0.317 O39 L3J 39
L3J C40 C31 C 0 1 N N N N N N 35.640 -6.031 100.216 7.015 0.798 -2.276 C40 L3J 40
L3J O41 O5 O 0 1 N N N N N N 36.154 -7.260 98.062 7.208 2.578 -0.298 O41 L3J 41
L3J C42 C32 C 0 1 Y N N N N N 36.778 -10.881 99.718 2.819 0.916 0.153 C42 L3J 42
L3J H1 H1 H 0 1 N N N N N N 40.690 -20.791 99.433 -6.560 2.692 -3.034 H1 L3J 43
L3J H2 H2 H 0 1 N N N N N N 40.573 -21.262 101.897 -8.540 3.233 -1.643 H2 L3J 44
L3J H3 H3 H 0 1 N N N N N N 41.878 -22.193 101.087 -9.007 2.958 -3.339 H3 L3J 45
L3J H4 H4 H 0 1 N N N N N N 42.283 -20.741 102.064 -9.296 1.694 -2.120 H4 L3J 46
L3J H5 H5 H 0 1 N N N N N N 34.095 -12.783 98.880 1.616 -2.238 0.511 H5 L3J 47
L3J H6 H6 H 0 1 N N N N N N 32.418 -10.113 97.899 4.013 -3.366 -1.530 H6 L3J 48
L3J H7 H7 H 0 1 N N N N N N 32.097 -9.856 99.647 4.910 -3.368 0.007 H7 L3J 49
L3J H8 H8 H 0 1 N N N N N N 32.395 -12.465 97.063 1.144 -3.182 -0.706 H8 L3J 50
L3J H9 H9 H 0 1 N N N N N N 30.640 -12.085 97.032 1.969 -4.336 -1.777 H9 L3J 51
L3J H10 H10 H 0 1 N N N N N N 32.372 -16.254 101.637 -3.865 -5.188 -1.084 H10 L3J 52
L3J H11 H11 H 0 1 N N N N N N 35.552 -14.249 97.835 0.190 -1.688 1.713 H11 L3J 53
L3J H12 H12 H 0 1 N N N N N N 37.079 -16.122 99.491 -1.959 -0.524 0.247 H12 L3J 54
L3J H13 H13 H 0 1 N N N N N N 35.391 -16.727 97.040 -1.958 -2.153 2.824 H13 L3J 55
L3J H14 H14 H 0 1 N N N N N N 35.685 -17.733 98.499 -3.434 -1.726 1.929 H14 L3J 56
L3J H15 H15 H 0 1 N N N N N N 37.648 -16.206 96.483 -1.823 0.380 3.160 H15 L3J 57
L3J H16 H16 H 0 1 N N N N N N 38.372 -17.203 97.791 -1.532 1.426 1.749 H16 L3J 58
L3J H17 H17 H 0 1 N N N N N N 39.765 -15.557 96.793 -4.020 -0.097 1.976 H17 L3J 59
L3J H19 H19 H 0 1 N N N N N N 39.510 -14.562 99.430 -3.012 1.453 0.057 H19 L3J 60
L3J H20 H20 H 0 1 N N N N N N 41.432 -14.165 97.493 -4.194 3.627 0.272 H20 L3J 61
L3J H21 H21 H 0 1 N N N N N N 40.714 -12.935 99.304 -4.861 2.697 2.940 H21 L3J 62
L3J H22 H22 H 0 1 N N N N N N 43.562 -14.914 98.540 -1.843 3.435 1.027 H22 L3J 63
L3J H23 H23 H 0 1 N N N N N N 42.637 -15.864 99.752 -2.742 4.588 2.043 H23 L3J 64
L3J H24 H24 H 0 1 N N N N N N 42.572 -16.317 98.015 -2.399 2.949 2.646 H24 L3J 65
L3J H25 H25 H 0 1 N N N N N N 40.469 -18.668 101.470 -7.243 0.434 -1.010 H25 L3J 66
L3J H26 H26 H 0 1 N N N N N N 43.117 -21.220 99.200 -7.735 1.322 -4.735 H26 L3J 67
L3J H27 H27 H 0 1 N N N N N N 42.648 -19.640 98.485 -6.363 0.431 -4.034 H27 L3J 68
L3J H28 H28 H 0 1 N N N N N N 43.469 -19.695 100.082 -8.025 0.058 -3.516 H28 L3J 69
L3J H29 H29 H 0 1 N N N N N N 30.585 -11.457 99.216 3.301 -5.107 0.252 H29 L3J 70
L3J H30 H30 H 0 1 N N N N N N 31.983 -12.489 99.672 2.606 -3.728 1.138 H30 L3J 71
L3J H31 H31 H 0 1 N N N N N N 30.097 -14.175 98.052 0.678 -6.039 -1.041 H31 L3J 72
L3J H32 H32 H 0 1 N N N N N N 31.161 -14.456 96.632 1.058 -5.661 0.656 H32 L3J 73
L3J H33 H33 H 0 1 N N N N N N 30.826 -14.882 100.302 -1.604 -6.111 -1.398 H33 L3J 74
L3J H34 H34 H 0 1 N N N N N N 34.479 -17.084 100.690 -4.212 -3.259 0.406 H34 L3J 75
L3J H35 H35 H 0 1 N N N N N N 33.520 -15.164 97.013 -0.027 -3.131 1.214 H35 L3J 76
L3J H36 H36 H 0 1 N N N N N N 34.318 -8.583 99.616 5.426 -0.964 -0.909 H36 L3J 77
L3J H37 H37 H 0 1 N N N N N N 38.537 -9.331 101.222 5.252 3.485 -1.547 H37 L3J 78
L3J H38 H38 H 0 1 N N N N N N 38.386 -7.553 101.428 3.576 2.888 -1.507 H38 L3J 79
L3J H39 H39 H 0 1 N N N N N N 36.119 -8.131 102.647 3.513 3.231 0.948 H39 L3J 80
L3J H40 H40 H 0 1 N N N N N N 36.795 -9.791 102.766 5.189 3.828 0.908 H40 L3J 81
L3J H41 H41 H 0 1 N N N N N N 37.101 -8.545 104.851 3.575 5.710 0.922 H41 L3J 82
L3J H42 H42 H 0 1 N N N N N N 38.682 -8.928 104.090 4.497 5.670 -0.600 H42 L3J 83
L3J H43 H43 H 0 1 N N N N N N 38.006 -7.268 103.971 2.820 5.074 -0.560 H43 L3J 84
L3J H44 H44 H 0 1 N N N N N N 36.065 -5.799 101.204 6.631 1.535 -2.981 H44 L3J 85
L3J H45 H45 H 0 1 N N N N N N 35.445 -5.095 99.672 8.096 0.717 -2.388 H45 L3J 86
L3J H46 H46 H 0 1 N N N N N N 34.698 -6.584 100.343 6.555 -0.170 -2.476 H46 L3J 87
L3J H47 H47 H 0 1 N N N N N N 37.832 -10.985 99.930 2.535 1.947 0.304 H47 L3J 88
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L3J C06 N07 SING N N 1
L3J C06 C04 SING N N 2
L3J N07 C08 SING N N 3
L3J C24 C25 SING N N 4
L3J C24 C23 SING N N 5
L3J C25 C26 SING N N 6
L3J C31 C26 DOUB Y N 7
L3J C31 C30 SING Y N 8
L3J O41 S38 DOUB N N 9
L3J C05 C04 SING N N 10
L3J C05 C30 SING N N 11
L3J C04 N03 SING N N 12
L3J N03 C02 SING N N 13
L3J C26 C27 SING Y N 14
L3J C09 C11 SING N N 15
L3J C09 C08 SING N N 16
L3J C09 O10 SING N N 17
L3J C30 C29 DOUB Y N 18
L3J C08 C12 SING N N 19
L3J C22 C23 SING N N 20
L3J C22 C21 SING N N 21
L3J C20 C21 DOUB Y N 22
L3J C20 C19 SING Y N 23
L3J C21 C32 SING Y N 24
L3J O39 S38 DOUB N N 25
L3J C02 C19 SING N N 26
L3J C02 O01 DOUB N N 27
L3J S38 N34 SING N N 28
L3J S38 C40 SING N N 29
L3J C19 C42 DOUB Y N 30
L3J N13 C12 SING N N 31
L3J N13 C14 DOUB N N 32
L3J C16 C15 SING N N 33
L3J C32 C33 DOUB Y N 34
L3J C12 O18 DOUB N N 35
L3J C42 C33 SING Y N 36
L3J C33 N34 SING N N 37
L3J C27 C28 DOUB Y N 38
L3J C29 C28 SING Y N 39
L3J C15 C14 SING N N 40
L3J C15 C17 SING N N 41
L3J N34 C35 SING N N 42
L3J C35 C36 SING N N 43
L3J C36 C37 SING N N 44
L3J C15 H1 SING N N 45
L3J C17 H2 SING N N 46
L3J C17 H3 SING N N 47
L3J C17 H4 SING N N 48
L3J C20 H5 SING N N 49
L3J C22 H6 SING N N 50
L3J C22 H7 SING N N 51
L3J C24 H8 SING N N 52
L3J C24 H9 SING N N 53
L3J C28 H10 SING N N 54
L3J N03 H11 SING N N 55
L3J C04 H12 SING N N 56
L3J C05 H13 SING N N 57
L3J C05 H14 SING N N 58
L3J C06 H15 SING N N 59
L3J C06 H16 SING N N 60
L3J N07 H17 SING N N 61
L3J C08 H19 SING N N 62
L3J C09 H20 SING N N 63
L3J O10 H21 SING N N 64
L3J C11 H22 SING N N 65
L3J C11 H23 SING N N 66
L3J C11 H24 SING N N 67
L3J C14 H25 SING N N 68
L3J C16 H26 SING N N 69
L3J C16 H27 SING N N 70
L3J C16 H28 SING N N 71
L3J C23 H29 SING N N 72
L3J C23 H30 SING N N 73
L3J C25 H31 SING N N 74
L3J C25 H32 SING N N 75
L3J C27 H33 SING N N 76
L3J C29 H34 SING N N 77
L3J C31 H35 SING N N 78
L3J C32 H36 SING N N 79
L3J C35 H37 SING N N 80
L3J C35 H38 SING N N 81
L3J C36 H39 SING N N 82
L3J C36 H40 SING N N 83
L3J C37 H41 SING N N 84
L3J C37 H42 SING N N 85
L3J C37 H43 SING N N 86
L3J C40 H44 SING N N 87
L3J C40 H45 SING N N 88
L3J C40 H46 SING N N 89
L3J C42 H47 SING N N 90
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L3J SMILES ACDLabs 12.01 C(\C=N\C(C(NCC2NC(=O)c1cc(cc(N(CCC)S(C)(=O)=O)c1)CCCCc3cccc(C2)c3)C(C)O)=O)(C)C
L3J InChI InChI 1.03 InChI=1S/C32H46N4O5S/c1-6-14-36(42(5,40)41)29-18-26-11-8-7-10-24-12-9-13-25(15-24)17-28(35-31(38)27(16-26)19-29)21-33-30(23(4)37)32(39)34-20-22(2)3/h9,12-13,15-16,18-20,22-23,28,30,33,37H,6-8,10-11,14,17,21H2,1-5H3,(H,35,38)/b34-20+/t23-,28-,30+/m0/s1
L3J InChIKey InChI 1.03 DQMUZJCEBNKYBU-PQJSMVLXSA-N
L3J SMILES_CANONICAL CACTVS 3.385 CCCN(c1cc2CCCCc3cccc(C[C@@H](CN[C@H]([C@H](C)O)C(=O)N=CC(C)C)NC(=O)c(c2)c1)c3)[S](C)(=O)=O
L3J SMILES CACTVS 3.385 CCCN(c1cc2CCCCc3cccc(C[CH](CN[CH]([CH](C)O)C(=O)N=CC(C)C)NC(=O)c(c2)c1)c3)[S](C)(=O)=O
L3J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCCN(c1cc2cc(c1)C(=O)N[C@@H](Cc3cccc(c3)CCCC2)CN[C@H]([C@H](C)O)C(=O)/N=C/C(C)C)S(=O)(=O)C
L3J SMILES "OpenEye OEToolkits" 2.0.7 CCCN(c1cc2cc(c1)C(=O)NC(Cc3cccc(c3)CCCC2)CNC(C(C)O)C(=O)N=CC(C)C)S(=O)(=O)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
L3J "SYSTEMATIC NAME" ACDLabs 12.01 (E)-N-(2-methylpropylidene)-N~2~-{[(4S)-17-[(methylsulfonyl)(propyl)amino]-2-oxo-3-azatricyclo[13.3.1.1~6,10~]icosa-1(19),6(20),7,9,15,17-hexaen-4-yl]methyl}-D-threoninamide
L3J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (~{N}~{E},2~{R},3~{S})-~{N}-(2-methylpropylidene)-2-[[(4~{S})-17-[methylsulfonyl(propyl)amino]-2-oxidanylidene-3-azatricyclo[13.3.1.1^{6,10}]icosa-1(18),6,8,10(20),15(19),16-hexaen-4-yl]methylamino]-3-oxidanyl-butanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L3J 'Create component' 2019-02-05 RCSB
L3J 'Initial release' 2019-10-09 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
L3J C15 C 9.614 -1.338 1
L3J C17 C 9.620 0.162 2
L3J C20 C -3.371 0.208 3
L3J C21 C -4.667 0.963 4
L3J C22 C -5.969 0.218 5
L3J C24 C -4.678 -2.037 6
L3J C26 C -3.387 -4.291 7
L3J C28 C -2.096 -6.546 8
L3J O01 O 0.529 0.944 9
L3J C02 C -0.773 0.199 10
L3J N03 N -0.778 -1.301 11
L3J C04 C 0.518 -2.056 12
L3J C05 C 0.513 -3.555 13
L3J C06 C 1.820 -1.310 14
L3J N07 N 3.116 -2.065 15
L3J C08 C 4.418 -1.319 16
L3J C09 C 4.423 0.181 17
L3J O10 O 3.127 0.935 18
L3J C11 C 5.725 0.926 19
L3J C12 C 5.714 -2.074 20
L3J N13 N 7.016 -1.329 21
L3J C14 C 8.313 -2.083 22
L3J C16 C 10.911 -2.093 23
L3J O18 O 5.709 -3.574 24
L3J C19 C -2.069 0.954 25
L3J C23 C -5.974 -1.282 26
L3J C25 C -4.683 -3.537 27
L3J C27 C -3.392 -5.791 28
L3J C29 C -0.794 -5.801 29
L3J C30 C -0.789 -4.301 30
L3J C31 C -2.085 -3.546 31
L3J C32 C -4.661 2.463 32
L3J C33 C -3.360 3.209 33
L3J N34 N -3.354 4.708 34
L3J C35 C -4.651 5.463 35
L3J C36 C -4.645 6.963 36
L3J C37 C -5.942 7.718 37
L3J S38 S -2.053 5.454 38
L3J O39 O -1.307 4.152 39
L3J C40 C -0.751 6.199 40
L3J O41 O -2.798 6.755 41
L3J C42 C -2.063 2.454 42
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
L3J C06 N07 SINGLE NONE 1
L3J C04 C06 SINGLE BEGINDASH 2
L3J C08 N07 SINGLE BEGINDASH 3
L3J C24 C25 SINGLE NONE 4
L3J C24 C23 SINGLE NONE 5
L3J C25 C26 SINGLE NONE 6
L3J C31 C26 SINGLE NONE 7
L3J C31 C30 DOUBLE NONE 8
L3J O41 S38 DOUBLE NONE 9
L3J C05 C04 SINGLE NONE 10
L3J C05 C30 SINGLE NONE 11
L3J C04 N03 SINGLE NONE 12
L3J N03 C02 SINGLE NONE 13
L3J C26 C27 DOUBLE NONE 14
L3J C09 C11 SINGLE BEGINWEDGE 15
L3J C09 C08 SINGLE NONE 16
L3J C09 O10 SINGLE NONE 17
L3J C30 C29 SINGLE NONE 18
L3J C08 C12 SINGLE NONE 19
L3J C22 C23 SINGLE NONE 20
L3J C22 C21 SINGLE NONE 21
L3J C20 C21 DOUBLE NONE 22
L3J C20 C19 SINGLE NONE 23
L3J C21 C32 SINGLE NONE 24
L3J O39 S38 DOUBLE NONE 25
L3J C02 C19 SINGLE NONE 26
L3J C02 O01 DOUBLE NONE 27
L3J S38 N34 SINGLE NONE 28
L3J S38 C40 SINGLE NONE 29
L3J C19 C42 DOUBLE NONE 30
L3J N13 C12 SINGLE ENDDOWNRIGHT 31
L3J N13 C14 DOUBLE NONE 32
L3J C16 C15 SINGLE NONE 33
L3J C32 C33 DOUBLE NONE 34
L3J C12 O18 DOUBLE NONE 35
L3J C42 C33 SINGLE NONE 36
L3J C33 N34 SINGLE NONE 37
L3J C27 C28 SINGLE NONE 38
L3J C29 C28 DOUBLE NONE 39
L3J C15 C14 SINGLE ENDDOWNRIGHT 40
L3J C15 C17 SINGLE NONE 41
L3J N34 C35 SINGLE NONE 42
L3J C35 C36 SINGLE NONE 43
L3J C36 C37 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
L3J MurckoScaffold S1 scaffold O=C1NCCc2cccc(c2)CCCCc2cccc1c2 InChI=1S/C19H21NO/c21-19-18-10-4-9-16(14-18)6-2-1-5-15-7-3-8-17(13-15)11-12-20-19/h3-4,7-10,13-14H,1-2,5-6,11-12H2,(H,20,21) NRLDUCAHJMJMCC-UHFFFAOYSA-N
L3J amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
L3J peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
L3J phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
L3J C20 S1 1
L3J C21 S1 1
L3J C22 S1 1
L3J C24 S1 1
L3J C26 S1 1
L3J C28 S1 1
L3J O01 S1 1
L3J C02 S1 1
L3J N03 S1 1
L3J C04 S1 1
L3J C05 S1 1
L3J C19 S1 1
L3J C23 S1 1
L3J C25 S1 1
L3J C27 S1 1
L3J C29 S1 1
L3J C30 S1 1
L3J C31 S1 1
L3J C32 S1 1
L3J C33 S1 1
L3J C42 S1 1
L3J N03 F1 1
L3J C02 F1 1
L3J O01 F1 1
L3J C19 F1 1
L3J O18 F2 1
L3J C12 F2 1
L3J C08 F2 1
L3J N07 F2 1
L3J C20 F3 1
L3J C21 F3 1
L3J C32 F3 1
L3J C33 F3 1
L3J C42 F3 1
L3J C19 F3 1
L3J C26 F3 2
L3J C31 F3 2
L3J C30 F3 2
L3J C29 F3 2
L3J C28 F3 2
L3J C27 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id L3J
_pdbe_chem_comp_rdkit_properties.exactmw 598.319
_pdbe_chem_comp_rdkit_properties.amw 598.810
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 42
_pdbe_chem_comp_rdkit_properties.NumAtoms 88
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.531
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 315.246
_pdbe_chem_comp_rdkit_properties.tpsa 128.170
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.075
_pdbe_chem_comp_rdkit_properties.CrippenMR 166.885
_pdbe_chem_comp_rdkit_properties.chi0v 21.055
_pdbe_chem_comp_rdkit_properties.chi1v 11.811
_pdbe_chem_comp_rdkit_properties.chi2v 4.786
_pdbe_chem_comp_rdkit_properties.chi3v 4.786
_pdbe_chem_comp_rdkit_properties.chi4v 2.988
_pdbe_chem_comp_rdkit_properties.chi0n 66.238
_pdbe_chem_comp_rdkit_properties.chi1n 33.174
_pdbe_chem_comp_rdkit_properties.chi2n 4.031
_pdbe_chem_comp_rdkit_properties.chi3n 4.031
_pdbe_chem_comp_rdkit_properties.chi4n 2.491
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.080
_pdbe_chem_comp_rdkit_properties.kappa1 7.407
_pdbe_chem_comp_rdkit_properties.kappa2 15.408
_pdbe_chem_comp_rdkit_properties.kappa3 10.029
_pdbe_chem_comp_rdkit_properties.Phi 2.717
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
L3J C15 8.047 -1.079 -0.443 ETKDGv3 1
L3J C17 8.158 -1.671 0.966 ETKDGv3 2
L3J C20 -2.478 -0.593 -1.083 ETKDGv3 3
L3J C21 -3.643 -1.228 -0.876 ETKDGv3 4
L3J C22 -3.772 -2.707 -1.141 ETKDGv3 5
L3J C24 -3.163 -3.599 1.214 ETKDGv3 6
L3J C26 -1.084 -2.246 1.895 ETKDGv3 7
L3J C28 1.228 -3.052 1.907 ETKDGv3 8
L3J O01 -0.882 2.722 -0.469 ETKDGv3 9
L3J C02 -0.991 1.502 -0.772 ETKDGv3 10
L3J N03 0.197 0.741 -1.040 ETKDGv3 11
L3J C04 1.462 1.002 -0.339 ETKDGv3 12
L3J C05 1.315 0.698 1.176 ETKDGv3 13
L3J C06 2.608 0.205 -1.020 ETKDGv3 14
L3J N07 3.956 0.429 -0.460 ETKDGv3 15
L3J C08 4.443 1.824 -0.449 ETKDGv3 16
L3J C09 4.466 2.494 -1.853 ETKDGv3 17
L3J O10 4.946 3.809 -1.732 ETKDGv3 18
L3J C11 5.312 1.734 -2.881 ETKDGv3 19
L3J C12 5.795 1.930 0.246 ETKDGv3 20
L3J N13 6.829 0.929 0.194 ETKDGv3 21
L3J C14 6.874 -0.144 -0.537 ETKDGv3 22
L3J C16 9.343 -0.367 -0.845 ETKDGv3 23
L3J O18 6.027 2.971 0.917 ETKDGv3 24
L3J C19 -2.331 0.855 -0.771 ETKDGv3 25
L3J C23 -2.820 -3.570 -0.291 ETKDGv3 26
L3J C25 -2.579 -2.434 2.041 ETKDGv3 27
L3J C27 -0.225 -3.268 2.063 ETKDGv3 28
L3J C29 1.703 -1.835 1.620 ETKDGv3 29
L3J C30 0.778 -0.686 1.472 ETKDGv3 30
L3J C31 -0.544 -0.888 1.630 ETKDGv3 31
L3J C32 -4.820 -0.458 -0.417 ETKDGv3 32
L3J C33 -4.723 0.860 -0.181 ETKDGv3 33
L3J N34 -5.864 1.607 0.277 ETKDGv3 34
L3J C35 -6.250 2.856 -0.390 ETKDGv3 35
L3J C36 -7.563 2.693 -1.166 ETKDGv3 36
L3J C37 -7.443 1.667 -2.292 ETKDGv3 37
L3J S38 -6.798 1.030 1.630 ETKDGv3 38
L3J O39 -7.855 0.077 1.148 ETKDGv3 39
L3J C40 -5.741 0.208 2.805 ETKDGv3 40
L3J O41 -7.455 2.191 2.322 ETKDGv3 41
L3J C42 -3.416 1.538 -0.357 ETKDGv3 42
L3J H1 7.881 -1.917 -1.156 ETKDGv3 43
L3J H2 8.987 -2.409 1.005 ETKDGv3 44
L3J H3 8.353 -0.874 1.715 ETKDGv3 45
L3J H4 7.214 -2.193 1.235 ETKDGv3 46
L3J H5 -1.634 -1.160 -1.445 ETKDGv3 47
L3J H6 -3.548 -2.888 -2.215 ETKDGv3 48
L3J H7 -4.818 -3.045 -0.974 ETKDGv3 49
L3J H8 -4.267 -3.613 1.346 ETKDGv3 50
L3J H9 -2.792 -4.555 1.640 ETKDGv3 51
L3J H10 1.909 -3.885 2.027 ETKDGv3 52
L3J H11 0.167 -0.003 -1.771 ETKDGv3 53
L3J H12 1.680 2.084 -0.453 ETKDGv3 54
L3J H13 0.636 1.458 1.622 ETKDGv3 55
L3J H14 2.281 0.843 1.700 ETKDGv3 56
L3J H15 2.380 -0.880 -0.954 ETKDGv3 57
L3J H16 2.617 0.430 -2.107 ETKDGv3 58
L3J H17 3.997 0.040 0.510 ETKDGv3 59
L3J H19 3.751 2.426 0.179 ETKDGv3 60
L3J H20 3.421 2.540 -2.234 ETKDGv3 61
L3J H21 4.671 4.298 -2.552 ETKDGv3 62
L3J H22 4.948 0.693 -2.999 ETKDGv3 63
L3J H23 6.381 1.730 -2.584 ETKDGv3 64
L3J H24 5.233 2.233 -3.870 ETKDGv3 65
L3J H25 6.095 -0.388 -1.239 ETKDGv3 66
L3J H26 9.248 0.047 -1.872 ETKDGv3 67
L3J H27 10.191 -1.084 -0.836 ETKDGv3 68
L3J H28 9.572 0.464 -0.143 ETKDGv3 69
L3J H29 -2.908 -4.612 -0.670 ETKDGv3 70
L3J H30 -1.763 -3.279 -0.460 ETKDGv3 71
L3J H31 -3.109 -1.499 1.770 ETKDGv3 72
L3J H32 -2.802 -2.618 3.114 ETKDGv3 73
L3J H33 -0.579 -4.261 2.304 ETKDGv3 74
L3J H34 2.770 -1.694 1.517 ETKDGv3 75
L3J H35 -1.228 -0.053 1.582 ETKDGv3 76
L3J H36 -5.767 -0.964 -0.286 ETKDGv3 77
L3J H37 -6.370 3.657 0.370 ETKDGv3 78
L3J H38 -5.459 3.194 -1.094 ETKDGv3 79
L3J H39 -7.839 3.675 -1.608 ETKDGv3 80
L3J H40 -8.381 2.393 -0.477 ETKDGv3 81
L3J H41 -7.263 0.653 -1.876 ETKDGv3 82
L3J H42 -8.388 1.643 -2.874 ETKDGv3 83
L3J H43 -6.611 1.938 -2.976 ETKDGv3 84
L3J H44 -6.295 0.047 3.753 ETKDGv3 85
L3J H45 -5.425 -0.775 2.401 ETKDGv3 86
L3J H46 -4.846 0.832 3.001 ETKDGv3 87
L3J H47 -3.338 2.582 -0.081 ETKDGv3 88
#