Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
L2P
Bonds between two atoms of the molecule
Total Number of Bonds: 133
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
C1
O1
C
O
sing
1.42
N
N
2
C1
C2
C
C
sing
1.52
N
N
3
C1
H12
C
H
sing
1.09
N
N
4
C1
H11
C
H
sing
1.09
N
N
5
O1
C11
O
C
sing
1.42
N
N
6
C2
O2
C
O
sing
1.43
N
N
7
C2
C3
C
C
sing
1.52
N
N
8
C2
H2
C
H
sing
1.1
N
N
9
O2
C41
O
C
sing
1.42
N
N
10
C3
O3
C
O
sing
1.42
N
N
11
C3
H32
C
H
sing
1.09
N
N
12
C3
H31
C
H
sing
1.09
N
N
13
O3
H3O
O
H
sing
0.97
N
N
14
C11
C12
C
C
sing
1.52
N
N
15
C11
H112
C
H
sing
1.09
N
N
16
C11
H111
C
H
sing
1.09
N
N
17
C12
C13
C
C
sing
1.54
N
N
18
C12
H122
C
H
sing
1.1
N
N
19
C12
H121
C
H
sing
1.1
N
N
20
C13
C14
C
C
sing
1.53
N
N
21
C13
C15
C
C
sing
1.54
N
N
22
C13
H13
C
H
sing
1.1
N
N
23
C14
H143
C
H
sing
1.09
N
N
24
C14
H142
C
H
sing
1.09
N
N
25
C14
H141
C
H
sing
1.09
N
N
26
C15
C16
C
C
sing
1.53
N
N
27
C15
H152
C
H
sing
1.1
N
N
28
C15
H151
C
H
sing
1.1
N
N
29
C16
C17
C
C
sing
1.54
N
N
30
C16
H162
C
H
sing
1.1
N
N
31
C16
H161
C
H
sing
1.09
N
N
32
C17
C18
C
C
sing
1.54
N
N
33
C17
H172
C
H
sing
1.1
N
N
34
C17
H171
C
H
sing
1.1
N
N
35
C18
C19
C
C
sing
1.53
N
N
36
C18
C20
C
C
sing
1.55
N
N
37
C18
H18
C
H
sing
1.1
N
N
38
C19
H193
C
H
sing
1.1
N
N
39
C19
H192
C
H
sing
1.09
N
N
40
C19
H191
C
H
sing
1.1
N
N
41
C20
C21
C
C
sing
1.53
N
N
42
C20
H202
C
H
sing
1.1
N
N
43
C20
H201
C
H
sing
1.1
N
N
44
C21
C22
C
C
sing
1.53
N
N
45
C21
H212
C
H
sing
1.1
N
N
46
C21
H211
C
H
sing
1.1
N
N
47
C22
C23
C
C
sing
1.54
N
N
48
C22
H222
C
H
sing
1.1
N
N
49
C22
H221
C
H
sing
1.1
N
N
50
C23
C24
C
C
sing
1.53
N
N
51
C23
C25
C
C
sing
1.54
N
N
52
C23
H23
C
H
sing
1.1
N
N
53
C24
H243
C
H
sing
1.09
N
N
54
C24
H242
C
H
sing
1.09
N
N
55
C24
H241
C
H
sing
1.09
N
N
56
C25
C26
C
C
sing
1.53
N
N
57
C25
H252
C
H
sing
1.1
N
N
58
C25
H251
C
H
sing
1.1
N
N
59
C26
C27
C
C
sing
1.53
N
N
60
C26
H262
C
H
sing
1.09
N
N
61
C26
H261
C
H
sing
1.09
N
N
62
C27
C28
C
C
sing
1.54
N
N
63
C27
H272
C
H
sing
1.1
N
N
64
C27
H271
C
H
sing
1.1
N
N
65
C28
C29
C
C
sing
1.53
N
N
66
C28
C30
C
C
sing
1.53
N
N
67
C28
H28
C
H
sing
1.1
N
N
68
C29
H293
C
H
sing
1.1
N
N
69
C29
H292
C
H
sing
1.1
N
N
70
C29
H291
C
H
sing
1.1
N
N
71
C30
H303
C
H
sing
1.1
N
N
72
C30
H302
C
H
sing
1.1
N
N
73
C30
H301
C
H
sing
1.09
N
N
74
C41
C42
C
C
sing
1.53
N
N
75
C41
H412
C
H
sing
1.09
N
N
76
C41
H411
C
H
sing
1.09
N
N
77
C42
C43
C
C
sing
1.54
N
N
78
C42
H422
C
H
sing
1.1
N
N
79
C42
H421
C
H
sing
1.1
N
N
80
C43
C44
C
C
sing
1.53
N
N
81
C43
C45
C
C
sing
1.54
N
N
82
C43
H43
C
H
sing
1.1
N
N
83
C44
H443
C
H
sing
1.09
N
N
84
C44
H442
C
H
sing
1.09
N
N
85
C44
H441
C
H
sing
1.09
N
N
86
C45
C46
C
C
sing
1.53
N
N
87
C45
H452
C
H
sing
1.1
N
N
88
C45
H451
C
H
sing
1.1
N
N
89
C46
C47
C
C
sing
1.53
N
N
90
C46
H462
C
H
sing
1.1
N
N
91
C46
H461
C
H
sing
1.09
N
N
92
C47
C48
C
C
sing
1.54
N
N
93
C47
H472
C
H
sing
1.1
N
N
94
C47
H471
C
H
sing
1.1
N
N
95
C48
C49
C
C
sing
1.53
N
N
96
C48
C50
C
C
sing
1.55
N
N
97
C48
H48
C
H
sing
1.1
N
N
98
C49
H493
C
H
sing
1.1
N
N
99
C49
H492
C
H
sing
1.09
N
N
100
C49
H491
C
H
sing
1.09
N
N
101
C50
C51
C
C
sing
1.53
N
N
102
C50
H502
C
H
sing
1.1
N
N
103
C50
H501
C
H
sing
1.1
N
N
104
C51
C52
C
C
sing
1.53
N
N
105
C51
H512
C
H
sing
1.1
N
N
106
C51
H511
C
H
sing
1.1
N
N
107
C52
C53
C
C
sing
1.54
N
N
108
C52
H522
C
H
sing
1.1
N
N
109
C52
H521
C
H
sing
1.1
N
N
110
C53
C54
C
C
sing
1.53
N
N
111
C53
C55
C
C
sing
1.54
N
N
112
C53
H53
C
H
sing
1.1
N
N
113
C54
H543
C
H
sing
1.09
N
N
114
C54
H542
C
H
sing
1.1
N
N
115
C54
H541
C
H
sing
1.1
N
N
116
C55
C56
C
C
sing
1.53
N
N
117
C55
H552
C
H
sing
1.1
N
N
118
C55
H551
C
H
sing
1.1
N
N
119
C56
C57
C
C
sing
1.53
N
N
120
C56
H562
C
H
sing
1.09
N
N
121
C56
H561
C
H
sing
1.09
N
N
122
C57
C58
C
C
sing
1.54
N
N
123
C57
H572
C
H
sing
1.1
N
N
124
C57
H571
C
H
sing
1.1
N
N
125
C58
C59
C
C
sing
1.53
N
N
126
C58
C60
C
C
sing
1.53
N
N
127
C58
H58
C
H
sing
1.1
N
N
128
C59
H593
C
H
sing
1.1
N
N
129
C59
H592
C
H
sing
1.09
N
N
130
C59
H591
C
H
sing
1.1
N
N
131
C60
H603
C
H
sing
1.1
N
N
132
C60
H602
C
H
sing
1.09
N
N
133
C60
H601
C
H
sing
1.09
N
N