Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : L2P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 134


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 4.348 20.178 -3.218
2 O1 O O1 N N N 0 4.706 19.782 -1.901
3 C2 C C2 R N N 0 3.116 19.405 -3.673
4 O2 O O2 N N N 0 2.048 19.662 -2.759
5 C3 C C3 N N N 0 3.374 17.903 -3.684
6 O3 O O3 N N N 0 2.185 17.234 -4.089
7 C11 C C11 N N N 0 5.88 20.451 -1.456
8 C12 C C12 N N N 0 6.204 19.981 -0.042
9 C13 C C13 R N N 0 7.477 20.622 0.54
10 C14 C C14 N N N 0 7.791 20.102 1.945
11 C15 C C15 N N N 0 7.404 22.165 0.511
12 C16 C C16 N N N 0 6.299 22.785 1.375
13 C17 C C17 N N N 0 6.281 24.313 1.229
14 C18 C C18 R N N 0 5.238 25.01 2.127
15 C19 C C19 N N N 0 3.807 24.59 1.77
16 C20 C C20 N N N 0 5.341 26.549 2.033
17 C21 C C21 N N N 0 6.729 27.152 2.287
18 C22 C C22 N N N 0 7.301 26.936 3.692
19 C23 C C23 R N N 0 8.725 27.48 3.925
20 C24 C C24 N N N 0 8.727 29.004 3.756
21 C25 C C25 N N N 0 9.808 26.814 3.051
22 C26 C C26 N N N 0 9.849 25.283 3.111
23 C27 C C27 N N N 0 10.167 24.799 4.53
24 C28 C C28 N N N 0 10.198 23.265 4.664
25 C29 C C29 N N N 0 8.842 22.682 4.257
26 C30 C C30 N N N 0 11.305 22.626 3.824
27 C41 C C41 N N N 0 1.734 21.045 -2.714
28 C42 C C42 N N N 0 0.592 21.254 -1.725
29 C43 C C43 R N N 0 0.177 22.728 -1.571
30 C44 C C44 N N N 0 1.341 23.607 -1.107
31 C45 C C45 N N N 0 -1.052 22.882 -0.649
32 C46 C C46 N N N 0 -0.839 22.449 0.807
33 C47 C C47 N N N 0 -2.133 22.592 1.618
34 C48 C C48 R N N 0 -1.973 22.24 3.111
35 C49 C C49 N N N 0 -1.574 20.772 3.311
36 C50 C C50 N N N 0 -3.27 22.513 3.906
37 C51 C C51 N N N 0 -3.178 22.355 5.428
38 C52 C C52 N N N 0 -2.112 23.211 6.123
39 C53 C C53 R N N 0 -2.222 24.732 5.894
40 C54 C C54 N N N 0 -1.053 25.442 6.586
41 C55 C C55 N N N 0 -3.577 25.339 6.312
42 C56 C C56 N N N 0 -4.813 24.658 5.711
43 C57 C C57 N N N 0 -6.102 25.306 6.231
44 C58 C C58 N N N 0 -7.382 24.683 5.644
45 C59 C C59 N N N 0 -7.369 24.812 4.119
46 C60 C C60 N N N 0 -7.551 23.214 6.035
47 H12 H 2H1 N N N 0 4.166 21.257 -3.209
48 H11 H 1H1 N N N 0 5.207 19.97 -3.864
49 H2 H H2 N N N 0 2.777 19.745 -4.658
50 H32 H 2H3 N N N 0 3.641 17.54 -2.687
51 H31 H 1H3 N N N 0 4.167 17.645 -4.393
52 H3O H H3O N N N 0 1.834 16.789 -3.302
53 H112 H 2H11 N N N 0 6.689 20.215 -2.152
54 H111 H 1H11 N N N 0 5.692 21.529 -1.475
55 H122 H 2H12 N N N 0 5.347 20.208 0.605
56 H121 H 1H12 N N N 0 6.287 18.887 -0.047
57 H13 H H13 N N N 0 8.32 20.342 -0.107
58 H143 H 3H14 N N N 0 8.637 20.643 2.381
59 H142 H 2H14 N N N 0 6.934 20.21 2.617
60 H141 H 1H14 N N N 0 8.064 19.042 1.919
61 H161 H 1H16 N N N 0 5.33 22.377 1.072
62 H152 H 2H15 N N N 0 8.374 22.565 0.831
63 H151 H 1H15 N N N 0 7.268 22.49 -0.529
64 H162 H 2H16 N N N 0 6.455 22.528 2.428
65 H172 H 2H17 N N N 0 6.099 24.575 0.179
66 H171 H 1H17 N N N 0 7.28 24.687 1.478
67 H18 H H18 N N N 0 5.414 24.708 3.166
68 H193 H 3H19 N N N 0 3.59 24.777 0.713
69 H192 H 2H19 N N N 0 3.64 23.527 1.971
70 H191 H 1H19 N N N 0 3.077 25.146 2.369
71 H202 H 2H20 N N N 0 4.63 26.999 2.737
72 H201 H 1H20 N N N 0 5.013 26.869 1.035
73 H212 H 2H21 N N N 0 7.44 26.748 1.557
74 H211 H 1H21 N N N 0 6.681 28.227 2.075
75 H222 H 2H22 N N N 0 6.623 27.39 4.425
76 H221 H 1H22 N N N 0 7.279 25.86 3.908
77 H23 H H23 N N N 0 8.998 27.286 4.971
78 H243 H 3H24 N N N 0 9.694 29.421 4.056
79 H242 H 2H24 N N N 0 8.546 29.299 2.718
80 H241 H 1H24 N N N 0 7.958 29.467 4.383
81 H252 H 2H25 N N N 0 10.788 27.207 3.352
82 H251 H 1H25 N N N 0 9.672 27.128 2.009
83 H262 H 2H26 N N N 0 8.883 24.879 2.793
84 H261 H 1H26 N N N 0 10.61 24.899 2.424
85 H272 H 2H27 N N N 0 11.147 25.197 4.826
86 H271 H 1H27 N N N 0 9.434 25.218 5.231
87 H28 H H28 N N N 0 10.372 23.006 5.716
88 H293 H 3H29 N N N 0 8.831 21.594 4.384
89 H292 H 2H29 N N N 0 8.039 23.096 4.876
90 H291 H 1H29 N N N 0 8.612 22.904 3.209
91 H303 H 3H30 N N N 0 11.256 21.533 3.883
92 H302 H 2H30 N N N 0 11.219 22.911 2.77
93 H301 H 1H30 N N N 0 12.297 22.924 4.179
94 H412 H 2H41 N N N 0 2.632 21.587 -2.407
95 H411 H 1H41 N N N 0 1.444 21.367 -3.719
96 H422 H 2H42 N N N 0 -0.27 20.66 -2.058
97 H421 H 1H42 N N N 0 0.884 20.829 -0.756
98 H43 H H43 N N N 0 -0.133 23.094 -2.56
99 H443 H 3H44 N N N 0 1.002 24.628 -0.906
100 H442 H 2H44 N N N 0 1.805 23.215 -0.196
101 H441 H 1H44 N N N 0 2.117 23.669 -1.876
102 H452 H 2H45 N N N 0 -1.37 23.933 -0.665
103 H451 H 1H45 N N N 0 -1.885 22.306 -1.074
104 H462 H 2H46 N N N 0 -0.056 23.059 1.27
105 H461 H 1H46 N N N 0 -0.505 21.407 0.83
106 H472 H 2H47 N N N 0 -2.912 21.961 1.171
107 H471 H 1H47 N N N 0 -2.476 23.629 1.526
108 H48 H H48 N N N 0 -1.167 22.854 3.53
109 H493 H 3H49 N N N 0 -2.291 20.097 2.832
110 H492 H 2H49 N N N 0 -0.582 20.568 2.897
111 H491 H 1H49 N N N 0 -1.532 20.521 4.376
112 H502 H 2H50 N N N 0 -4.063 21.853 3.533
113 H501 H 1H50 N N N 0 -3.61 23.536 3.693
114 H512 H 2H51 N N N 0 -4.152 22.583 5.877
115 H511 H 1H51 N N N 0 -2.999 21.297 5.655
116 H522 H 2H52 N N N 0 -2.144 23.01 7.201
117 H521 H 1H52 N N N 0 -1.125 22.86 5.795
118 H53 H H53 N N N 0 -2.106 24.924 4.82
119 H543 H 3H54 N N N 0 -1.036 26.503 6.317
120 H542 H 2H54 N N N 0 -1.126 25.378 7.677
121 H541 H 1H54 N N N 0 -0.095 25.007 6.281
122 H552 H 2H55 N N N 0 -3.586 26.4 6.03
123 H551 H 1H55 N N N 0 -3.656 25.323 7.406
124 H562 H 2H56 N N N 0 -4.778 24.735 4.62
125 H561 H 1H56 N N N 0 -4.82 23.594 5.968
126 H572 H 2H57 N N N 0 -6.13 25.204 7.324
127 H571 H 1H57 N N N 0 -6.081 26.382 6.016
128 H58 H H58 N N N 0 -8.25 25.24 6.02
129 H593 H 3H59 N N N 0 -8.291 24.409 3.685
130 H592 H 2H59 N N N 0 -7.291 25.861 3.817
131 H591 H 1H59 N N N 0 -6.524 24.269 3.681
132 H603 H 3H60 N N N 0 -8.43 22.78 5.546
133 H602 H 2H60 N N N 0 -6.677 22.623 5.745
134 H601 H 1H60 N N N 0 -7.696 23.103 7.114