Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : J3I    

Bonds between two atoms of the molecule

Total Number of Bonds: 63


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C N C doub 1.3 N N
2 N C N C sing 1.37 N N
3 C N2 C N sing 1.38 N N
4 N2 C1 N C sing 1.47 N N
5 N2 C20 N C sing 1.47 N N
6 C1 C2 C C sing 1.53 N N
7 C20 C19 C C sing 1.53 N N
8 C2 C3 C C sing 1.53 N N
9 C18 C17 C C doub 1.38 N Y
10 C18 C13 C C sing 1.38 N Y
11 C19 C3 C C sing 1.53 N N
12 C17 C16 C C sing 1.38 N Y
13 C3 C4 C C sing 1.53 N N
14 O1 C10 O C doub 1.21 N N
15 C12 C13 C C sing 1.51 N N
16 C12 C11 C C sing 1.53 N N
17 C13 C14 C C doub 1.38 N Y
18 N5 C11 N C sing 1.47 N N
19 C16 C15 C C doub 1.38 N Y
20 C10 C11 C C sing 1.51 N N
21 C10 N4 C N sing 1.35 N N
22 N3 C4 N C sing 1.47 N N
23 N3 C5 N C sing 1.35 N N
24 C14 C15 C C sing 1.38 N Y
25 C6 N4 C N sing 1.47 N N
26 C6 C5 C C sing 1.51 N N
27 C6 C7 C C sing 1.54 N N
28 N4 C9 N C sing 1.47 N N
29 C5 O C O doub 1.21 N N
30 C9 C8 C C sing 1.55 N N
31 C7 C8 C C sing 1.55 N N
32 C1 H1 C H sing 1.09 N N
33 C1 H2 C H sing 1.09 N N
34 C2 H3 C H sing 1.09 N N
35 C2 H4 C H sing 1.09 N N
36 C3 H5 C H sing 1.09 N N
37 C4 H6 C H sing 1.09 N N
38 C4 H7 C H sing 1.09 N N
39 C6 H8 C H sing 1.09 N N
40 C9 H9 C H sing 1.09 N N
41 C9 H10 C H sing 1.09 N N
42 C11 H11 C H sing 1.09 N N
43 C12 H12 C H sing 1.09 N N
44 C12 H13 C H sing 1.09 N N
45 C15 H14 C H sing 1.08 N N
46 C18 H15 C H sing 1.08 N N
47 N H16 N H sing 0.97 N N
48 N H17 N H sing 0.97 N N
49 C14 H18 C H sing 1.08 N N
50 C16 H19 C H sing 1.08 N N
51 C17 H20 C H sing 1.08 N N
52 C19 H21 C H sing 1.09 N N
53 C19 H22 C H sing 1.09 N N
54 C20 H23 C H sing 1.09 N N
55 C20 H24 C H sing 1.09 N N
56 C7 H25 C H sing 1.09 N N
57 C7 H26 C H sing 1.09 N N
58 C8 H27 C H sing 1.09 N N
59 C8 H28 C H sing 1.09 N N
60 N1 H29 N H sing 0.97 N N
61 N3 H30 N H sing 0.97 N N
62 N5 H31 N H sing 1.01 N N
63 N5 H32 N H sing 1.01 N N