data_J3I
#
_chem_comp.id J3I
_chem_comp.name
(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(1-carbamimidoylpiperidin-4-yl)methyl]pyrrolidine-2-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H32 N6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-12-13
_chem_comp.pdbx_modified_date 2018-01-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 400.518
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code J3I
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5MNQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J3I C1 C1 C 0 1 N N N N N N 16.942 61.189 8.476 6.575 -1.472 -0.341 C1 J3I 1
J3I C2 C2 C 0 1 N N N N N N 16.146 60.581 9.610 5.174 -1.706 0.233 C2 J3I 2
J3I C3 C3 C 0 1 N N N N N N 16.980 60.410 10.858 4.204 -0.687 -0.370 C3 J3I 3
J3I C4 C4 C 0 1 N N N N N N 16.306 60.025 12.152 2.796 -0.940 0.175 C4 J3I 4
J3I C5 C5 C 0 1 N N N N N N 16.487 57.681 12.770 0.539 -0.089 -0.169 C5 J3I 5
J3I C6 C6 C 0 1 N N S N N N 15.907 56.269 12.689 -0.437 0.833 -0.854 C6 J3I 6
J3I C9 C7 C 0 1 N N N N N N 16.902 54.370 13.894 -2.279 1.837 0.296 C9 J3I 7
J3I C10 C8 C 0 1 N N N N N N 17.964 55.322 11.802 -2.479 -0.559 -0.429 C10 J3I 8
J3I C11 C9 C 0 1 N N R N N N 19.132 54.342 11.892 -3.868 -0.659 0.148 C11 J3I 9
J3I C12 C10 C 0 1 N N N N N N 18.986 53.179 10.901 -4.870 -0.032 -0.823 C12 J3I 10
J3I C13 C11 C 0 1 Y N N N N N 17.842 52.244 11.191 -6.239 -0.022 -0.194 C13 J3I 11
J3I C15 C12 C 0 1 Y N N N N N 16.767 50.616 12.605 -7.901 1.073 1.138 C15 J3I 12
J3I C18 C13 C 0 1 Y N N N N N 16.802 52.097 10.289 -7.088 -1.099 -0.368 C18 J3I 13
J3I N N1 N 0 1 N N N N N N 19.943 60.201 6.752 9.026 -0.751 0.841 N J3I 14
J3I C C14 C 0 1 N N N N N N 18.672 60.521 6.963 8.132 0.243 0.521 C J3I 15
J3I O O1 O 0 1 N N N N N N 17.482 57.897 13.461 0.148 -0.870 0.672 O J3I 16
J3I C14 C15 C 0 1 Y N N N N N 17.811 51.487 12.354 -6.645 1.063 0.561 C14 J3I 17
J3I C16 C16 C 0 1 Y N N N N N 15.744 50.483 11.695 -8.752 -0.002 0.960 C16 J3I 18
J3I C17 C17 C 0 1 Y N N N N N 15.762 51.219 10.539 -8.344 -1.089 0.209 C17 J3I 19
J3I C19 C18 C 0 1 N N N N N N 18.195 59.543 10.523 4.649 0.728 0.005 C19 J3I 20
J3I C20 C19 C 0 1 N N N N N N 18.985 60.079 9.320 6.044 0.989 -0.571 C20 J3I 21
J3I C7 C20 C 0 1 N N N N N N 15.078 55.961 13.949 -0.077 2.302 -0.546 C7 J3I 22
J3I C8 C21 C 0 1 N N N N N N 15.491 54.581 14.386 -1.467 2.971 -0.377 C8 J3I 23
J3I N1 N2 N 0 1 N N N N N N 17.954 60.933 5.925 8.403 1.483 0.817 N1 J3I 24
J3I N2 N3 N 0 1 N N N N N N 18.114 60.363 8.168 6.952 -0.070 -0.112 N2 J3I 25
J3I N3 N4 N 0 1 N N N N N N 15.863 58.637 12.081 1.847 -0.044 -0.491 N3 J3I 26
J3I N4 N5 N 0 1 N N N N N N 17.003 55.292 12.744 -1.793 0.598 -0.337 N4 J3I 27
J3I N5 N6 N 0 1 N N N N N N 20.367 55.095 11.532 -4.209 -2.072 0.360 N5 J3I 28
J3I O1 O2 O 0 1 N N N N N N 17.923 56.091 10.860 -1.979 -1.519 -0.975 O1 J3I 29
J3I H1 H1 H 0 1 N N N N N N 17.276 62.196 8.768 7.288 -2.128 0.158 H1 J3I 30
J3I H2 H2 H 0 1 N N N N N N 16.304 61.259 7.583 6.572 -1.681 -1.410 H2 J3I 31
J3I H3 H3 H 0 1 N N N N N N 15.295 61.239 9.839 4.843 -2.714 -0.015 H3 J3I 32
J3I H4 H4 H 0 1 N N N N N N 15.773 59.595 9.294 5.200 -1.586 1.316 H4 J3I 33
J3I H5 H5 H 0 1 N N N N N N 17.400 61.408 11.050 4.197 -0.790 -1.455 H5 J3I 34
J3I H6 H6 H 0 1 N N N N N N 17.017 60.140 12.983 2.514 -1.975 -0.015 H6 J3I 35
J3I H7 H7 H 0 1 N N N N N N 15.437 60.678 12.320 2.783 -0.751 1.248 H7 J3I 36
J3I H8 H8 H 0 1 N N N N N N 15.297 56.147 11.782 -0.415 0.662 -1.930 H8 J3I 37
J3I H9 H9 H 0 1 N N N N N N 17.057 53.328 13.578 -2.085 1.816 1.369 H9 J3I 38
J3I H10 H10 H 0 1 N N N N N N 17.634 54.630 14.673 -3.344 1.969 0.107 H10 J3I 39
J3I H11 H11 H 0 1 N N N N N N 19.210 53.949 12.916 -3.905 -0.130 1.100 H11 J3I 40
J3I H12 H12 H 0 1 N N N N N N 19.918 52.595 10.918 -4.566 0.990 -1.049 H12 J3I 41
J3I H13 H13 H 0 1 N N N N N N 18.837 53.602 9.897 -4.897 -0.616 -1.743 H13 J3I 42
J3I H14 H14 H 0 1 N N N N N N 16.755 50.039 13.518 -8.217 1.920 1.728 H14 J3I 43
J3I H15 H15 H 0 1 N N N N N N 16.802 52.676 9.377 -6.770 -1.948 -0.954 H15 J3I 44
J3I H16 H16 H 0 1 N N N N N N 20.498 59.836 7.500 8.794 -1.680 0.686 H16 J3I 45
J3I H17 H17 H 0 1 N N N N N N 20.346 60.325 5.845 9.889 -0.523 1.221 H17 J3I 46
J3I H18 H18 H 0 1 N N N N N N 18.613 51.580 13.072 -5.980 1.903 0.701 H18 J3I 47
J3I H19 H19 H 0 1 N N N N N N 14.930 49.801 11.891 -9.733 0.005 1.411 H19 J3I 48
J3I H20 H20 H 0 1 N N N N N N 14.962 51.113 9.821 -9.008 -1.930 0.073 H20 J3I 49
J3I H21 H21 H 0 1 N N N N N N 17.849 58.525 10.293 3.945 1.452 -0.405 H21 J3I 50
J3I H22 H22 H 0 1 N N N N N N 18.861 59.515 11.398 4.680 0.825 1.090 H22 J3I 51
J3I H23 H23 H 0 1 N N N N N N 19.732 59.328 9.023 5.997 0.983 -1.660 H23 J3I 52
J3I H24 H24 H 0 1 N N N N N N 19.496 61.007 9.616 6.406 1.958 -0.227 H24 J3I 53
J3I H25 H25 H 0 1 N N N N N N 15.296 56.694 14.739 0.500 2.372 0.377 H25 J3I 54
J3I H26 H26 H 0 1 N N N N N N 14.003 55.983 13.715 0.468 2.748 -1.378 H26 J3I 55
J3I H27 H27 H 0 1 N N N N N N 14.820 53.828 13.946 -1.893 3.236 -1.344 H27 J3I 56
J3I H28 H28 H 0 1 N N N N N N 15.458 54.506 15.483 -1.403 3.845 0.273 H28 J3I 57
J3I H29 H29 H 0 1 N N N N N N 16.998 61.094 6.171 7.741 2.175 0.662 H29 J3I 58
J3I H30 H30 H 0 1 N N N N N N 15.080 58.399 11.507 2.160 0.581 -1.163 H30 J3I 59
J3I H31 H31 H 0 1 N N N N N N 20.487 55.861 12.164 -4.182 -2.585 -0.508 H31 J3I 60
J3I H32 H32 H 0 1 N N N N N N 21.158 54.486 11.592 -3.601 -2.492 1.047 H32 J3I 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J3I N1 C DOUB N N 1
J3I N C SING N N 2
J3I C N2 SING N N 3
J3I N2 C1 SING N N 4
J3I N2 C20 SING N N 5
J3I C1 C2 SING N N 6
J3I C20 C19 SING N N 7
J3I C2 C3 SING N N 8
J3I C18 C17 DOUB Y N 9
J3I C18 C13 SING Y N 10
J3I C19 C3 SING N N 11
J3I C17 C16 SING Y N 12
J3I C3 C4 SING N N 13
J3I O1 C10 DOUB N N 14
J3I C12 C13 SING N N 15
J3I C12 C11 SING N N 16
J3I C13 C14 DOUB Y N 17
J3I N5 C11 SING N N 18
J3I C16 C15 DOUB Y N 19
J3I C10 C11 SING N N 20
J3I C10 N4 SING N N 21
J3I N3 C4 SING N N 22
J3I N3 C5 SING N N 23
J3I C14 C15 SING Y N 24
J3I C6 N4 SING N N 25
J3I C6 C5 SING N N 26
J3I C6 C7 SING N N 27
J3I N4 C9 SING N N 28
J3I C5 O DOUB N N 29
J3I C9 C8 SING N N 30
J3I C7 C8 SING N N 31
J3I C1 H1 SING N N 32
J3I C1 H2 SING N N 33
J3I C2 H3 SING N N 34
J3I C2 H4 SING N N 35
J3I C3 H5 SING N N 36
J3I C4 H6 SING N N 37
J3I C4 H7 SING N N 38
J3I C6 H8 SING N N 39
J3I C9 H9 SING N N 40
J3I C9 H10 SING N N 41
J3I C11 H11 SING N N 42
J3I C12 H12 SING N N 43
J3I C12 H13 SING N N 44
J3I C15 H14 SING N N 45
J3I C18 H15 SING N N 46
J3I N H16 SING N N 47
J3I N H17 SING N N 48
J3I C14 H18 SING N N 49
J3I C16 H19 SING N N 50
J3I C17 H20 SING N N 51
J3I C19 H21 SING N N 52
J3I C19 H22 SING N N 53
J3I C20 H23 SING N N 54
J3I C20 H24 SING N N 55
J3I C7 H25 SING N N 56
J3I C7 H26 SING N N 57
J3I C8 H27 SING N N 58
J3I C8 H28 SING N N 59
J3I N1 H29 SING N N 60
J3I N3 H30 SING N N 61
J3I N5 H31 SING N N 62
J3I N5 H32 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J3I InChI InChI 1.03 InChI=1S/C21H32N6O2/c22-17(13-15-5-2-1-3-6-15)20(29)27-10-4-7-18(27)19(28)25-14-16-8-11-26(12-9-16)21(23)24/h1-3,5-6,16-18H,4,7-14,22H2,(H3,23,24)(H,25,28)/t17-,18+/m1/s1
J3I InChIKey InChI 1.03 MQLNFLUDIXFKTN-MSOLQXFVSA-N
J3I SMILES_CANONICAL CACTVS 3.385 N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)NCC3CCN(CC3)C(N)=N
J3I SMILES CACTVS 3.385 N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)NCC3CCN(CC3)C(N)=N
J3I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C(\N)/N1CCC(CC1)CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc3ccccc3)N"
J3I SMILES "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NCC3CCN(CC3)C(=N)N)N
#
_pdbx_chem_comp_identifier.comp_id J3I
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(1-carbamimidoylpiperidin-4-yl)methyl]pyrrolidine-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J3I 'Create component' 2016-12-13 EBI
J3I 'Initial release' 2018-01-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
J3I C1 C 6.404 -6.094 1
J3I C2 C 6.404 -4.594 2
J3I C3 C 5.104 -3.844 3
J3I C4 C 5.104 -2.344 4
J3I C5 C 6.404 -0.094 5
J3I C6 C 7.702 0.656 6
J3I C9 C 9.326 2.460 7
J3I C10 C 6.745 3.151 8
J3I C11 C 7.056 4.619 9
J3I C12 C 5.942 5.622 10
J3I C13 C 6.254 7.090 11
J3I C15 C 5.451 9.561 12
J3I C18 C 7.680 7.553 13
J3I N N 6.404 -9.094 14
J3I C C 5.104 -8.344 15
J3I O O 5.104 0.656 16
J3I C14 C 5.139 8.093 17
J3I C16 C 6.877 10.024 18
J3I C17 C 7.992 9.020 19
J3I C19 C 3.805 -4.594 20
J3I C20 C 3.805 -6.094 21
J3I C7 C 9.073 0.046 22
J3I C8 C 10.076 1.161 23
J3I N1 N 3.805 -9.094 24
J3I N2 N 5.104 -6.844 25
J3I N3 N 6.404 -1.594 26
J3I N4 N 7.859 2.148 27
J3I N5 N 8.483 5.082 28
J3I O1 O 5.318 2.688 29
J3I H29 H 3.805 -10.594 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
J3I N1 C DOUBLE NONE 1
J3I N C SINGLE ENDDOWNRIGHT 2
J3I C N2 SINGLE ENDDOWNRIGHT 3
J3I N2 C1 SINGLE NONE 4
J3I N2 C20 SINGLE NONE 5
J3I C1 C2 SINGLE NONE 6
J3I C20 C19 SINGLE NONE 7
J3I C2 C3 SINGLE NONE 8
J3I C18 C17 DOUBLE NONE 9
J3I C18 C13 SINGLE NONE 10
J3I C19 C3 SINGLE NONE 11
J3I C17 C16 SINGLE NONE 12
J3I C3 C4 SINGLE NONE 13
J3I O1 C10 DOUBLE NONE 14
J3I C12 C13 SINGLE NONE 15
J3I C12 C11 SINGLE NONE 16
J3I C13 C14 DOUBLE NONE 17
J3I C11 N5 SINGLE BEGINWEDGE 18
J3I C16 C15 DOUBLE NONE 19
J3I C10 C11 SINGLE NONE 20
J3I C10 N4 SINGLE NONE 21
J3I N3 C4 SINGLE NONE 22
J3I N3 C5 SINGLE NONE 23
J3I C14 C15 SINGLE NONE 24
J3I C6 N4 SINGLE NONE 25
J3I C6 C5 SINGLE BEGINWEDGE 26
J3I C6 C7 SINGLE NONE 27
J3I N4 C9 SINGLE NONE 28
J3I C5 O DOUBLE NONE 29
J3I C9 C8 SINGLE NONE 30
J3I C7 C8 SINGLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
J3I MurckoScaffold S1 scaffold 'O=C(NCC1CCNCC1)[C@@H]1CCCN1C(=O)CCc1ccccc1' InChI=1S/C20H29N3O2/c24-19(9-8-16-5-2-1-3-6-16)23-14-4-7-18(23)20(25)22-15-17-10-12-21-13-11-17/h1-3,5-6,17-18,21H,4,7-15H2,(H,22,25)/t18-/m0/s1 ORPNHGRVZZXAJE-SFHVURJKSA-N
J3I amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
J3I peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
J3I phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
J3I C1 S1 1
J3I C2 S1 1
J3I C3 S1 1
J3I C4 S1 1
J3I C5 S1 1
J3I C6 S1 1
J3I C9 S1 1
J3I C10 S1 1
J3I C11 S1 1
J3I C12 S1 1
J3I C13 S1 1
J3I C15 S1 1
J3I C18 S1 1
J3I O S1 1
J3I C14 S1 1
J3I C16 S1 1
J3I C17 S1 1
J3I C19 S1 1
J3I C20 S1 1
J3I C7 S1 1
J3I C8 S1 1
J3I N2 S1 1
J3I N3 S1 1
J3I N4 S1 1
J3I O1 S1 1
J3I N3 F1 1
J3I C5 F1 1
J3I O F1 1
J3I C6 F1 1
J3I N4 F1 2
J3I C10 F1 2
J3I O1 F1 2
J3I C11 F1 2
J3I O F2 1
J3I C5 F2 1
J3I C6 F2 1
J3I N4 F2 1
J3I O1 F2 2
J3I C10 F2 2
J3I C11 F2 2
J3I N5 F2 2
J3I C13 F3 1
J3I C18 F3 1
J3I C17 F3 1
J3I C16 F3 1
J3I C15 F3 1
J3I C14 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id J3I
_pdbe_chem_comp_rdkit_properties.exactmw 400.259
_pdbe_chem_comp_rdkit_properties.amw 400.527
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.571
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 216.959
_pdbe_chem_comp_rdkit_properties.tpsa 128.540
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.214
_pdbe_chem_comp_rdkit_properties.CrippenMR 111.811
_pdbe_chem_comp_rdkit_properties.chi0v 14.000
_pdbe_chem_comp_rdkit_properties.chi1v 7.368
_pdbe_chem_comp_rdkit_properties.chi2v 2.979
_pdbe_chem_comp_rdkit_properties.chi3v 2.979
_pdbe_chem_comp_rdkit_properties.chi4v 1.745
_pdbe_chem_comp_rdkit_properties.chi0n 46.000
_pdbe_chem_comp_rdkit_properties.chi1n 23.051
_pdbe_chem_comp_rdkit_properties.chi2n 2.979
_pdbe_chem_comp_rdkit_properties.chi3n 2.979
_pdbe_chem_comp_rdkit_properties.chi4n 1.745
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.610
_pdbe_chem_comp_rdkit_properties.kappa1 4.665
_pdbe_chem_comp_rdkit_properties.kappa2 9.735
_pdbe_chem_comp_rdkit_properties.kappa3 5.471
_pdbe_chem_comp_rdkit_properties.Phi 1.566
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
J3I UniChem SureChEMBL SCHEMBL7340878
J3I UniChem 'PubChem TPHARMA' 14805836
J3I UniChem PubChem 9843969
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
J3I C1 -3.074 1.915 0.997 ETKDGv3 1
J3I C2 -1.963 0.974 0.521 ETKDGv3 2
J3I C3 -2.513 -0.303 -0.173 ETKDGv3 3
J3I C4 -2.415 -0.203 -1.710 ETKDGv3 4
J3I C5 -0.192 -1.345 -2.165 ETKDGv3 5
J3I C6 1.256 -1.228 -2.569 ETKDGv3 6
J3I C9 2.465 -3.286 -2.962 ETKDGv3 7
J3I C10 2.376 -2.456 -0.575 ETKDGv3 8
J3I C11 2.426 -1.305 0.408 ETKDGv3 9
J3I C12 3.561 -0.317 0.060 ETKDGv3 10
J3I C13 3.698 0.759 1.106 ETKDGv3 11
J3I C15 4.449 1.567 3.293 ETKDGv3 12
J3I C18 3.061 2.084 0.897 ETKDGv3 13
J3I N -4.986 3.315 2.786 ETKDGv3 14
J3I C -4.677 1.927 2.946 ETKDGv3 15
J3I O -0.683 -2.475 -1.892 ETKDGv3 16
J3I C14 4.353 0.518 2.257 ETKDGv3 17
J3I C16 3.875 2.760 3.096 ETKDGv3 18
J3I C17 3.146 3.030 1.840 ETKDGv3 19
J3I C19 -3.968 -0.629 0.241 ETKDGv3 20
J3I C20 -4.256 -0.228 1.691 ETKDGv3 21
J3I C7 1.406 -1.410 -4.080 ETKDGv3 22
J3I C8 1.827 -2.861 -4.278 ETKDGv3 23
J3I N1 -5.019 1.334 4.048 ETKDGv3 24
J3I N2 -3.994 1.205 1.898 ETKDGv3 25
J3I N3 -1.021 -0.174 -2.149 ETKDGv3 26
J3I N4 2.054 -2.298 -1.975 ETKDGv3 27
J3I N5 1.116 -0.655 0.523 ETKDGv3 28
J3I O1 2.693 -3.601 -0.153 ETKDGv3 29
J3I H1 -2.599 2.769 1.528 ETKDGv3 30
J3I H2 -3.638 2.311 0.125 ETKDGv3 31
J3I H3 -1.269 1.535 -0.141 ETKDGv3 32
J3I H4 -1.374 0.669 1.413 ETKDGv3 33
J3I H5 -1.881 -1.159 0.155 ETKDGv3 34
J3I H6 -2.926 0.724 -2.052 ETKDGv3 35
J3I H7 -2.932 -1.063 -2.189 ETKDGv3 36
J3I H8 1.655 -0.234 -2.290 ETKDGv3 37
J3I H9 2.112 -4.300 -2.671 ETKDGv3 38
J3I H10 3.574 -3.284 -3.049 ETKDGv3 39
J3I H11 2.674 -1.745 1.402 ETKDGv3 40
J3I H12 3.392 0.150 -0.931 ETKDGv3 41
J3I H13 4.521 -0.875 -0.017 ETKDGv3 42
J3I H14 4.982 1.367 4.214 ETKDGv3 43
J3I H15 2.522 2.290 -0.020 ETKDGv3 44
J3I H16 -5.447 3.844 3.559 ETKDGv3 45
J3I H17 -4.804 3.810 1.886 ETKDGv3 46
J3I H18 4.811 -0.446 2.440 ETKDGv3 47
J3I H19 3.943 3.529 3.855 ETKDGv3 48
J3I H20 2.679 3.995 1.686 ETKDGv3 49
J3I H21 -4.158 -1.717 0.114 ETKDGv3 50
J3I H22 -4.685 -0.085 -0.413 ETKDGv3 51
J3I H23 -3.621 -0.825 2.381 ETKDGv3 52
J3I H24 -5.324 -0.453 1.906 ETKDGv3 53
J3I H25 0.475 -1.176 -4.644 ETKDGv3 54
J3I H26 2.217 -0.745 -4.450 ETKDGv3 55
J3I H27 0.927 -3.484 -4.475 ETKDGv3 56
J3I H28 2.537 -2.965 -5.127 ETKDGv3 57
J3I H29 -4.812 0.328 4.236 ETKDGv3 58
J3I H30 -0.631 0.726 -2.509 ETKDGv3 59
J3I H31 1.018 -0.275 1.492 ETKDGv3 60
J3I H32 1.059 0.168 -0.117 ETKDGv3 61
#