Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : J0T    

Bonds between two atoms of the molecule

Total Number of Bonds: 69


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N10 N09 N N doub 1.29 N Y
2 N10 N11 N N sing 1.29 N Y
3 N09 C08 N C sing 1.35 N Y
4 O22 C16 O C sing 1.43 N N
5 C15 N11 C N sing 1.47 N N
6 C15 C16 C C sing 1.53 N N
7 C15 C14 C C sing 1.53 N N
8 N11 C12 N C sing 1.35 N Y
9 C17 C16 C C sing 1.53 N N
10 C17 S23 C S sing 1.81 N N
11 C17 O18 C O sing 1.43 N N
12 C24 S23 C S sing 1.81 N N
13 C24 C25 C C sing 1.53 N N
14 C13 C14 C C sing 1.53 N N
15 C13 O18 C O sing 1.43 N N
16 C13 C20 C C sing 1.53 N N
17 C14 O19 C O sing 1.43 N N
18 C08 C12 C C doub 1.37 N Y
19 C08 C02 C C sing 1.48 N N
20 C03 C02 C C doub 1.39 N Y
21 C03 C04 C C sing 1.38 N Y
22 O21 C20 O C sing 1.43 N N
23 C27 C25 C C sing 1.53 N N
24 C27 N28 C N sing 1.47 N N
25 C02 C01 C C sing 1.39 N Y
26 C25 O26 C O sing 1.43 N N
27 C04 C05 C C doub 1.38 N Y
28 N29 N28 N N sing 1.29 N Y
29 N29 N32 N N doub 1.29 N Y
30 N28 C31 N C sing 1.35 N Y
31 N32 C30 N C sing 1.35 N Y
32 C01 C06 C C doub 1.38 N Y
33 C31 C30 C C doub 1.36 N Y
34 C05 C06 C C sing 1.39 N Y
35 C30 C33 C C sing 1.48 N N
36 C06 F07 C F sing 1.35 N N
37 C33 C34 C C doub 1.39 N Y
38 C33 C38 C C sing 1.39 N Y
39 C34 C35 C C sing 1.38 N Y
40 C38 C37 C C doub 1.38 N Y
41 C35 F39 C F sing 1.35 N N
42 C35 C36 C C doub 1.39 N Y
43 C37 C36 C C sing 1.38 N Y
44 C03 H1 C H sing 1.08 N N
45 C05 H2 C H sing 1.08 N N
46 C12 H3 C H sing 1.08 N N
47 C14 H4 C H sing 1.09 N N
48 C15 H5 C H sing 1.09 N N
49 C16 H6 C H sing 1.09 N N
50 C24 H7 C H sing 1.09 N N
51 C24 H8 C H sing 1.09 N N
52 C37 H9 C H sing 1.08 N N
53 C01 H10 C H sing 1.08 N N
54 C04 H11 C H sing 1.08 N N
55 C13 H12 C H sing 1.09 N N
56 C17 H13 C H sing 1.09 N N
57 C20 H14 C H sing 1.09 N N
58 C20 H15 C H sing 1.09 N N
59 C25 H16 C H sing 1.09 N N
60 C27 H17 C H sing 1.09 N N
61 C27 H18 C H sing 1.09 N N
62 C31 H19 C H sing 1.08 N N
63 C34 H20 C H sing 1.08 N N
64 C36 H21 C H sing 1.08 N N
65 C38 H22 C H sing 1.08 N N
66 O19 H23 O H sing 0.97 N N
67 O21 H24 O H sing 0.97 N N
68 O22 H25 O H sing 0.97 N N
69 O26 H26 O H sing 0.97 N N