Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : HY5    

Bonds between two atoms of the molecule

Total Number of Bonds: 108


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C36 C37 C C doub 1.31 N N
2 C36 C33 C C sing 1.51 N N
3 C34 C33 C C sing 1.53 N N
4 C33 O32 C O sing 1.43 N N
5 C33 C35 C C sing 1.53 N N
6 O41 C40 O C sing 1.43 N N
7 O32 C31 O C sing 1.43 N N
8 C38 O39 C O sing 1.43 N N
9 C38 C40 C C sing 1.53 N N
10 C38 C30 C C sing 1.53 N N
11 C40 C42 C C sing 1.53 N N
12 C42 O43 C O sing 1.43 N N
13 C42 C28 C C sing 1.53 N N
14 C31 C30 C C sing 1.53 N N
15 C30 O29 C O sing 1.43 N N
16 O29 C28 O C sing 1.43 N N
17 C22 C21 C C sing 1.53 N N
18 C22 C20 C C sing 1.53 N N
19 C28 O27 C O sing 1.43 N N
20 C21 C20 C C sing 1.53 N N
21 C20 C18 C C sing 1.51 N N
22 O27 C26 O C sing 1.43 N N
23 C18 O19 C O doub 1.21 N N
24 C18 N17 C N sing 1.35 N N
25 N17 C16 N C sing 1.46 N N
26 C26 C12 C C sing 1.51 N N
27 C26 C44 C C sing 1.51 N N
28 C16 C14 C C sing 1.53 N N
29 O45 C44 O C sing 1.43 N N
30 C11 C10 C C sing 1.53 N N
31 C12 C13 C C doub 1.31 N N
32 C12 C10 C C sing 1.5 N N
33 C44 C46 C C sing 1.5 N N
34 C14 C13 C C sing 1.51 N N
35 C14 C15 C C sing 1.53 N N
36 C13 C23 C C sing 1.5 N N
37 C10 C24 C C sing 1.54 N N
38 C10 C09 C C sing 1.51 N N
39 C24 C23 C C sing 1.53 N N
40 C24 O25 C O sing 1.42 N N
41 C47 C46 C C sing 1.53 N N
42 C46 C01 C C sing 1.49 N N
43 C09 C08 C C doub 1.31 E N
44 C01 C08 C C sing 1.48 N N
45 C01 C02 C C sing 1.55 N N
46 C08 C04 C C sing 1.53 N N
47 C02 C03 C C sing 1.54 N N
48 C05 C04 C C sing 1.53 N N
49 C05 O06 C O sing 1.43 N N
50 C04 C03 C C sing 1.53 N N
51 C07 O06 C O sing 1.43 N N
52 C01 H011 C H sing 1.14 N N
53 C02 H021 C H sing 1.08 N N
54 C02 H022 C H sing 1.08 N N
55 C03 H032 C H sing 1.09 N N
56 C03 H031 C H sing 1.09 N N
57 C04 H041 C H sing 1.09 N N
58 C05 H051 C H sing 1.09 N N
59 C05 H052 C H sing 1.09 N N
60 C07 H073 C H sing 1.09 N N
61 C07 H072 C H sing 1.09 N N
62 C07 H071 C H sing 1.09 N N
63 C09 H091 C H sing 1.09 N N
64 C11 H111 C H sing 1.09 N N
65 C11 H113 C H sing 1.09 N N
66 C11 H112 C H sing 1.09 N N
67 C14 H141 C H sing 1.09 N N
68 C15 H151 C H sing 1.09 N N
69 C15 H152 C H sing 1.09 N N
70 C15 H153 C H sing 1.09 N N
71 C16 H162 C H sing 1.09 N N
72 C16 H161 C H sing 1.09 N N
73 C20 H201 C H sing 1.09 N N
74 C21 H212 C H sing 1.09 N N
75 C21 H211 C H sing 1.09 N N
76 C22 H221 C H sing 1.09 N N
77 C22 H222 C H sing 1.09 N N
78 C23 H232 C H sing 1.09 N N
79 C23 H231 C H sing 1.09 N N
80 C24 H241 C H sing 1.1 N N
81 C26 H261 C H sing 1.12 N N
82 C28 H281 C H sing 1.09 N N
83 C30 H301 C H sing 1.09 N N
84 C31 H312 C H sing 1.09 N N
85 C31 H311 C H sing 1.09 N N
86 C34 H342 C H sing 1.09 N N
87 C34 H341 C H sing 1.09 N N
88 C34 H343 C H sing 1.09 N N
89 C35 H353 C H sing 1.09 N N
90 C35 H351 C H sing 1.09 N N
91 C35 H352 C H sing 1.09 N N
92 C36 H361 C H sing 1.08 N N
93 C37 H372 C H sing 1.08 N N
94 C37 H371 C H sing 1.08 N N
95 C38 H381 C H sing 1.09 N N
96 C40 H401 C H sing 1.09 N N
97 C42 H421 C H sing 1.09 N N
98 C44 H441 C H sing 1.14 N N
99 C46 H461 C H sing 1.14 N N
100 C47 H473 C H sing 1.09 N N
101 C47 H472 C H sing 1.09 N N
102 C47 H471 C H sing 1.09 N N
103 N17 H171 N H sing 0.97 N N
104 O25 H251 O H sing 0.97 N N
105 O39 H391 O H sing 0.97 N N
106 O41 H411 O H sing 0.97 N N
107 O43 H431 O H sing 0.97 N N
108 O45 H451 O H sing 0.97 N N