data_HY5
#
_chem_comp.id HY5
_chem_comp.name FC-NCPC
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C36 H57 N O10"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-01-02
_chem_comp.pdbx_modified_date 2020-01-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 663.838
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HY5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6QDU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HY5 C01 C1 C 0 1 N N S N N N 17.942 20.921 1.801 3.111 0.693 1.638 C01 HY5 1
HY5 C02 C2 C 0 1 N N N N N N 17.756 21.579 2.975 4.546 1.025 2.124 C02 HY5 2
HY5 C03 C3 C 0 1 N N N N N N 19.203 21.683 3.656 5.397 0.236 1.119 C03 HY5 3
HY5 C04 C4 C 0 1 N N S N N N 19.911 20.317 3.227 4.592 0.181 -0.180 C04 HY5 4
HY5 C05 C5 C 0 1 N N N N N N 21.468 20.538 3.027 5.359 0.886 -1.299 C05 HY5 5
HY5 C07 C6 C 0 1 N N N N N N 23.438 21.092 4.246 7.341 0.727 -2.638 C07 HY5 6
HY5 C08 C7 C 0 1 N N N N N N 19.319 19.991 2.058 3.318 0.943 0.191 C08 HY5 7
HY5 C09 C8 C 0 1 N N N N N N 19.861 18.852 1.162 2.680 1.608 -0.742 C09 HY5 8
HY5 C10 C9 C 0 1 N N R N N N 19.241 18.403 -0.196 1.523 2.539 -0.476 C10 HY5 9
HY5 C11 C10 C 0 1 N N N N N N 20.345 18.536 -1.276 1.850 3.616 0.554 C11 HY5 10
HY5 C12 C11 C 0 1 N N N N N N 18.024 19.095 -0.658 0.391 1.603 -0.166 C12 HY5 11
HY5 C13 C12 C 0 1 N N N N N N 16.786 18.232 -0.289 -0.578 1.757 -1.034 C13 HY5 12
HY5 C14 C13 C 0 1 N N S N N N 15.308 18.572 -0.598 -1.911 1.053 -0.982 C14 HY5 13
HY5 C15 C14 C 0 1 N N N N N N 14.532 18.605 0.706 -2.085 0.198 -2.239 C15 HY5 14
HY5 C16 C15 C 0 1 N N N N N N 14.793 17.476 -1.537 -3.033 2.091 -0.912 C16 HY5 15
HY5 C18 C16 C 0 1 N N N N N N 12.390 16.896 -2.212 -5.363 2.188 -0.206 C18 HY5 16
HY5 C20 C17 C 0 1 N N N N N N 11.011 17.415 -2.685 -6.570 1.579 0.461 C20 HY5 17
HY5 C21 C18 C 0 1 N N N N N N 9.892 16.372 -2.694 -7.852 2.412 0.497 C21 HY5 18
HY5 C22 C19 C 0 1 N N N N N N 10.504 16.859 -4.014 -7.040 2.201 1.777 C22 HY5 19
HY5 C23 C20 C 0 1 N N N N N N 17.283 16.992 0.357 -0.208 2.733 -2.108 C23 HY5 20
HY5 C24 C21 C 0 1 N N S N N N 18.808 16.891 -0.019 1.196 3.259 -1.802 C24 HY5 21
HY5 C26 C22 C 0 1 N N R N N N 17.910 20.392 -1.546 0.372 0.499 0.866 C26 HY5 22
HY5 C28 C23 C 0 1 N N S N N N 17.808 20.318 -3.841 1.219 -1.651 1.492 C28 HY5 23
HY5 C30 C24 C 0 1 N N R N N N 17.994 17.896 -4.284 -0.390 -2.818 0.150 C30 HY5 24
HY5 C31 C25 C 0 1 N N N N N N 18.978 16.837 -4.777 -1.782 -3.452 0.203 C31 HY5 25
HY5 C33 C26 C 0 1 N N N N N N 20.678 16.543 -6.547 -4.102 -2.976 -0.166 C33 HY5 26
HY5 C34 C27 C 0 1 N N N N N N 19.771 15.592 -7.374 -4.824 -2.528 1.107 C34 HY5 27
HY5 C35 C28 C 0 1 N N N N N N 21.588 15.690 -5.622 -4.076 -4.504 -0.226 C35 HY5 28
HY5 C36 C29 C 0 1 N N N N N N 21.547 17.322 -7.576 -4.829 -2.437 -1.371 C36 HY5 29
HY5 C37 C30 C 0 1 N N N N N N 22.427 18.250 -7.201 -4.575 -1.227 -1.803 C37 HY5 30
HY5 C38 C31 C 0 1 N N S N N N 16.825 18.002 -5.269 0.639 -3.880 -0.247 C38 HY5 31
HY5 C40 C32 C 0 1 N N S N N N 15.991 19.232 -5.074 2.037 -3.252 -0.239 C40 HY5 32
HY5 C42 C33 C 0 1 N N R N N N 16.822 20.460 -5.006 2.313 -2.665 1.148 C42 HY5 33
HY5 C44 C34 C 0 1 N N R N N N 17.278 21.521 -0.652 0.639 1.202 2.172 C44 HY5 34
HY5 C46 C35 C 0 1 N N R N N N 18.025 21.967 0.639 2.078 1.161 2.602 C46 HY5 35
HY5 C47 C36 C 0 1 N N N N N N 19.477 22.239 0.266 2.482 2.432 3.358 C47 HY5 36
HY5 N17 N1 N 0 1 N N N N N N 13.454 17.888 -1.995 -4.206 1.499 -0.265 N17 HY5 37
HY5 O06 O1 O 0 1 N N N N N N 22.029 20.923 4.278 6.547 0.150 -1.599 O06 HY5 38
HY5 O19 O2 O 0 1 N N N N N N 12.583 15.734 -2.027 -5.433 3.298 -0.688 O19 HY5 39
HY5 O25 O3 O 0 1 N N N N N N 19.471 16.276 0.954 2.109 2.951 -2.843 O25 HY5 40
HY5 O27 O4 O 0 1 N N N N N N 17.097 20.116 -2.656 1.254 -0.576 0.551 O27 HY5 41
HY5 O29 O5 O 0 1 N N N N N N 18.728 19.164 -4.108 -0.057 -2.292 1.436 O29 HY5 42
HY5 O32 O6 O 0 1 N N N N N N 19.868 17.446 -5.743 -2.763 -2.476 -0.155 O32 HY5 43
HY5 O39 O7 O 0 1 N N N N N N 16.010 16.825 -5.112 0.342 -4.367 -1.557 O39 HY5 44
HY5 O41 O8 O 0 1 N N N N N N 15.055 19.300 -6.194 3.012 -4.254 -0.537 O41 HY5 45
HY5 O43 O9 O 0 1 N N N N N N 15.990 21.615 -4.793 3.585 -2.014 1.147 O43 HY5 46
HY5 O45 O10 O 0 1 N N N N N N 17.104 22.648 -1.470 0.049 2.497 2.251 O45 HY5 47
HY5 H011 H1 H 0 0 N N N N N N 17.114 20.228 1.591 3.089 -0.439 1.724 H011 HY5 48
HY5 H021 H2 H 0 0 N N N N N N 17.347 22.583 2.790 4.746 2.084 2.030 H021 HY5 49
HY5 H022 H3 H 0 0 N N N N N N 17.068 21.017 3.623 4.696 0.652 3.128 H022 HY5 50
HY5 H032 H4 H 0 0 N N N N N N 19.758 22.552 3.272 6.344 0.743 0.954 H032 HY5 51
HY5 H031 H5 H 0 0 N N N N N N 19.119 21.756 4.750 5.565 -0.773 1.493 H031 HY5 52
HY5 H041 H6 H 0 0 N N N N N N 19.749 19.564 4.012 4.341 -0.841 -0.452 H041 HY5 53
HY5 H051 H7 H 0 0 N N N N N N 21.935 19.604 2.682 4.732 0.943 -2.189 H051 HY5 54
HY5 H052 H8 H 0 0 N N N N N N 21.639 21.330 2.283 5.627 1.893 -0.978 H052 HY5 55
HY5 H073 H9 H 0 0 N N N N N N 23.795 21.388 5.244 8.223 0.110 -2.806 H073 HY5 56
HY5 H072 H10 H 0 0 N N N N N N 23.914 20.145 3.952 6.755 0.781 -3.556 H072 HY5 57
HY5 H071 H11 H 0 0 N N N N N N 23.697 21.874 3.517 7.649 1.731 -2.345 H071 HY5 58
HY5 H091 H12 H 0 0 N N N N N N 20.740 18.326 1.505 3.020 1.491 -1.772 H091 HY5 59
HY5 H111 H13 H 0 0 N N N N N N 21.255 18.021 -0.936 0.928 3.973 1.012 H111 HY5 60
HY5 H113 H14 H 0 0 N N N N N N 19.996 18.081 -2.215 2.500 3.198 1.323 H113 HY5 61
HY5 H112 H15 H 0 0 N N N N N N 20.567 19.600 -1.444 2.357 4.447 0.062 H112 HY5 62
HY5 H141 H16 H 0 0 N N N N N N 15.250 19.550 -1.097 -1.951 0.415 -0.100 H141 HY5 63
HY5 H151 H17 H 0 0 N N N N N N 14.931 19.402 1.350 -3.113 0.279 -2.594 H151 HY5 64
HY5 H152 H18 H 0 0 N N N N N N 13.470 18.800 0.496 -1.404 0.549 -3.014 H152 HY5 65
HY5 H153 H19 H 0 0 N N N N N N 14.633 17.636 1.217 -1.863 -0.843 -2.004 H153 HY5 66
HY5 H162 H20 H 0 0 N N N N N N 14.729 16.518 -0.999 -2.696 2.952 -0.335 H162 HY5 67
HY5 H161 H21 H 0 0 N N N N N N 15.469 17.369 -2.398 -3.297 2.410 -1.921 H161 HY5 68
HY5 H201 H22 H 0 0 N N N N N N 10.744 18.450 -2.427 -6.674 0.499 0.349 H201 HY5 69
HY5 H212 H23 H 0 0 N N N N N N 8.866 16.662 -2.422 -7.824 3.401 0.039 H212 HY5 70
HY5 H211 H24 H 0 0 N N N N N N 10.090 15.350 -2.340 -8.800 1.881 0.409 H211 HY5 71
HY5 H221 H25 H 0 0 N N N N N N 11.140 16.185 -4.607 -7.453 1.531 2.531 H221 HY5 72
HY5 H222 H26 H 0 0 N N N N N N 9.917 17.498 -4.690 -6.476 3.051 2.161 H222 HY5 73
HY5 H232 H27 H 0 0 N N N N N N 17.161 17.054 1.448 -0.206 2.231 -3.078 H232 HY5 74
HY5 H231 H28 H 0 0 N N N N N N 16.736 16.117 -0.024 -0.919 3.558 -2.124 H231 HY5 75
HY5 H241 H29 H 0 0 N N N N N N 18.904 16.378 -0.987 1.160 4.339 -1.623 H241 HY5 76
HY5 H261 H30 H 0 0 N N N N N N 18.919 20.703 -1.855 -0.652 0.051 0.918 H261 HY5 77
HY5 H281 H31 H 0 0 N N N N N N 18.404 21.240 -3.776 1.387 -1.261 2.496 H281 HY5 78
HY5 H301 H32 H 0 0 N N N N N N 17.597 17.573 -3.310 -0.385 -2.013 -0.585 H301 HY5 79
HY5 H312 H33 H 0 0 N N N N N N 18.427 16.011 -5.250 -1.828 -4.287 -0.496 H312 HY5 80
HY5 H311 H34 H 0 0 N N N N N N 19.561 16.450 -3.929 -1.979 -3.812 1.213 H311 HY5 81
HY5 H342 H35 H 0 0 N N N N N N 19.130 15.012 -6.694 -4.843 -1.439 1.150 H342 HY5 82
HY5 H341 H36 H 0 0 N N N N N N 19.142 16.185 -8.054 -5.845 -2.909 1.098 H341 HY5 83
HY5 H343 H37 H 0 0 N N N N N N 20.399 14.905 -7.961 -4.298 -2.917 1.979 H343 HY5 84
HY5 H353 H38 H 0 0 N N N N N N 20.966 15.143 -4.898 -3.550 -4.893 0.646 H353 HY5 85
HY5 H351 H39 H 0 0 N N N N N N 22.159 14.973 -6.230 -5.097 -4.885 -0.235 H351 HY5 86
HY5 H352 H40 H 0 0 N N N N N N 22.284 16.350 -5.083 -3.562 -4.823 -1.133 H352 HY5 87
HY5 H361 H41 H 0 0 N N N N N N 21.433 17.104 -8.628 -5.559 -3.050 -1.880 H361 HY5 88
HY5 H372 H42 H 0 0 N N N N N N 23.013 18.770 -7.944 -3.755 -0.664 -1.381 H372 HY5 89
HY5 H371 H43 H 0 0 N N N N N N 22.554 18.482 -6.154 -5.185 -0.791 -2.580 H371 HY5 90
HY5 H381 H44 H 0 0 N N N N N N 17.240 18.021 -6.288 0.606 -4.705 0.464 H381 HY5 91
HY5 H401 H45 H 0 0 N N N N N N 15.426 19.131 -4.135 2.086 -2.460 -0.987 H401 HY5 92
HY5 H421 H46 H 0 0 N N N N N N 17.391 20.571 -5.941 2.314 -3.465 1.889 H421 HY5 93
HY5 H441 H47 H 0 0 N N N N N N 16.289 21.157 -0.338 0.074 0.608 2.958 H441 HY5 94
HY5 H461 H48 H 0 0 N N N N N N 17.572 22.905 0.991 2.091 0.372 3.429 H461 HY5 95
HY5 H473 H49 H 0 0 N N N N N N 20.032 22.557 1.161 1.951 2.473 4.309 H473 HY5 96
HY5 H472 H50 H 0 0 N N N N N N 19.929 21.322 -0.139 3.556 2.419 3.542 H472 HY5 97
HY5 H471 H51 H 0 0 N N N N N N 19.518 23.034 -0.493 2.226 3.307 2.761 H471 HY5 98
HY5 H171 H52 H 0 0 N N N N N N 13.266 18.856 -2.161 -4.150 0.611 0.122 H171 HY5 99
HY5 H251 H53 H 0 0 N N N N N N 19.176 15.375 1.019 1.916 3.395 -3.680 H251 HY5 100
HY5 H391 H54 H 0 0 N N N N N N 16.545 16.050 -5.237 0.958 -5.040 -1.876 H391 HY5 101
HY5 H411 H55 H 0 0 N N N N N N 14.507 20.071 -6.103 3.922 -3.926 -0.549 H411 HY5 102
HY5 H431 H56 H 0 0 N N N N N N 16.533 22.394 -4.751 3.825 -1.618 1.996 H431 HY5 103
HY5 H451 H57 H 0 0 N N N N N N 16.722 23.353 -0.961 -0.914 2.497 2.161 H451 HY5 104
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HY5 C36 C37 DOUB N N 1
HY5 C36 C33 SING N N 2
HY5 C34 C33 SING N N 3
HY5 C33 O32 SING N N 4
HY5 C33 C35 SING N N 5
HY5 O41 C40 SING N N 6
HY5 O32 C31 SING N N 7
HY5 C38 O39 SING N N 8
HY5 C38 C40 SING N N 9
HY5 C38 C30 SING N N 10
HY5 C40 C42 SING N N 11
HY5 C42 O43 SING N N 12
HY5 C42 C28 SING N N 13
HY5 C31 C30 SING N N 14
HY5 C30 O29 SING N N 15
HY5 O29 C28 SING N N 16
HY5 C22 C21 SING N N 17
HY5 C22 C20 SING N N 18
HY5 C28 O27 SING N N 19
HY5 C21 C20 SING N N 20
HY5 C20 C18 SING N N 21
HY5 O27 C26 SING N N 22
HY5 C18 O19 DOUB N N 23
HY5 C18 N17 SING N N 24
HY5 N17 C16 SING N N 25
HY5 C26 C12 SING N N 26
HY5 C26 C44 SING N N 27
HY5 C16 C14 SING N N 28
HY5 O45 C44 SING N N 29
HY5 C11 C10 SING N N 30
HY5 C12 C13 DOUB N N 31
HY5 C12 C10 SING N N 32
HY5 C44 C46 SING N N 33
HY5 C14 C13 SING N N 34
HY5 C14 C15 SING N N 35
HY5 C13 C23 SING N N 36
HY5 C10 C24 SING N N 37
HY5 C10 C09 SING N N 38
HY5 C24 C23 SING N N 39
HY5 C24 O25 SING N N 40
HY5 C47 C46 SING N N 41
HY5 C46 C01 SING N N 42
HY5 C09 C08 DOUB N E 43
HY5 C01 C08 SING N N 44
HY5 C01 C02 SING N N 45
HY5 C08 C04 SING N N 46
HY5 C02 C03 SING N N 47
HY5 C05 C04 SING N N 48
HY5 C05 O06 SING N N 49
HY5 C04 C03 SING N N 50
HY5 C07 O06 SING N N 51
HY5 C01 H011 SING N N 52
HY5 C02 H021 SING N N 53
HY5 C02 H022 SING N N 54
HY5 C03 H032 SING N N 55
HY5 C03 H031 SING N N 56
HY5 C04 H041 SING N N 57
HY5 C05 H051 SING N N 58
HY5 C05 H052 SING N N 59
HY5 C07 H073 SING N N 60
HY5 C07 H072 SING N N 61
HY5 C07 H071 SING N N 62
HY5 C09 H091 SING N N 63
HY5 C11 H111 SING N N 64
HY5 C11 H113 SING N N 65
HY5 C11 H112 SING N N 66
HY5 C14 H141 SING N N 67
HY5 C15 H151 SING N N 68
HY5 C15 H152 SING N N 69
HY5 C15 H153 SING N N 70
HY5 C16 H162 SING N N 71
HY5 C16 H161 SING N N 72
HY5 C20 H201 SING N N 73
HY5 C21 H212 SING N N 74
HY5 C21 H211 SING N N 75
HY5 C22 H221 SING N N 76
HY5 C22 H222 SING N N 77
HY5 C23 H232 SING N N 78
HY5 C23 H231 SING N N 79
HY5 C24 H241 SING N N 80
HY5 C26 H261 SING N N 81
HY5 C28 H281 SING N N 82
HY5 C30 H301 SING N N 83
HY5 C31 H312 SING N N 84
HY5 C31 H311 SING N N 85
HY5 C34 H342 SING N N 86
HY5 C34 H341 SING N N 87
HY5 C34 H343 SING N N 88
HY5 C35 H353 SING N N 89
HY5 C35 H351 SING N N 90
HY5 C35 H352 SING N N 91
HY5 C36 H361 SING N N 92
HY5 C37 H372 SING N N 93
HY5 C37 H371 SING N N 94
HY5 C38 H381 SING N N 95
HY5 C40 H401 SING N N 96
HY5 C42 H421 SING N N 97
HY5 C44 H441 SING N N 98
HY5 C46 H461 SING N N 99
HY5 C47 H473 SING N N 100
HY5 C47 H472 SING N N 101
HY5 C47 H471 SING N N 102
HY5 N17 H171 SING N N 103
HY5 O25 H251 SING N N 104
HY5 O39 H391 SING N N 105
HY5 O41 H411 SING N N 106
HY5 O43 H431 SING N N 107
HY5 O45 H451 SING N N 108
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HY5 InChI InChI 1.03 InChI=1S/C36H57NO10/c1-8-35(4,5)45-17-25-29(40)30(41)31(42)34(46-25)47-32-27-23(18(2)15-37-33(43)20-9-10-20)13-26(38)36(27,6)14-24-21(16-44-7)11-12-22(24)19(3)28(32)39/h8,14,18-22,25-26,28-32,34,38-42H,1,9-13,15-17H2,2-7H3,(H,37,43)/b24-14-/t18-,19-,21-,22+,25-,26+,28-,29-,30+,31-,32-,34-,36+/m1/s1
HY5 InChIKey InChI 1.03 JBRXTTSSZMLHDF-CZMZLNQESA-N
HY5 SMILES_CANONICAL CACTVS 3.385 COC[C@H]1CC[C@H]\2[C@@H](C)[C@@H](O)[C@H](O[C@H]3O[C@H](COC(C)(C)C=C)[C@@H](O)[C@H](O)[C@H]3O)C4=C(C[C@H](O)[C@]4(C)\C=C1\2)[C@H](C)CNC(=O)C5CC5
HY5 SMILES CACTVS 3.385 COC[CH]1CC[CH]2[CH](C)[CH](O)[CH](O[CH]3O[CH](COC(C)(C)C=C)[CH](O)[CH](O)[CH]3O)C4=C(C[CH](O)[C]4(C)C=C12)[CH](C)CNC(=O)C5CC5
HY5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 C[C@@H]1[C@@H]\2CC[C@@H](/C2=C/[C@]3([C@H](CC(=C3[C@H]([C@@H]1O)O[C@@H]4[C@@H]([C@H]([C@@H]([C@H](O4)COC(C)(C)C=C)O)O)O)[C@H](C)CNC(=O)C5CC5)O)C)COC
HY5 SMILES "OpenEye OEToolkits" 2.0.6 CC1C2CCC(C2=CC3(C(CC(=C3C(C1O)OC4C(C(C(C(O4)COC(C)(C)C=C)O)O)O)C(C)CNC(=O)C5CC5)O)C)COC
#
_pdbx_chem_comp_identifier.comp_id HY5
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
~{N}-[(2~{S})-2-[(1~{E},3~{R},4~{S},8~{R},9~{R},10~{R},11~{S},14~{S})-14-(methoxymethyl)-3,10-dimethyl-8-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(2-methylbut-3-en-2-yloxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,9-bis(oxidanyl)-6-tricyclo[9.3.0.0^{3,7}]tetradeca-1,6-dienyl]propyl]cyclopropanecarboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HY5 'Create component' 2019-01-02 EBI
HY5 'Initial release' 2020-01-29 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
HY5 C01 C 12.007 2.892 1
HY5 C02 C 11.041 4.029 2
HY5 C03 C 11.821 5.299 3
HY5 C04 C 13.271 4.952 4
HY5 C05 C 14.410 5.929 5
HY5 C07 C 15.274 8.379 6
HY5 C08 C 13.392 3.466 7
HY5 C09 C 14.778 2.892 8
HY5 C10 C 15.352 1.506 9
HY5 C11 C 16.366 2.612 10
HY5 C12 C 14.778 0.121 11
HY5 C13 C 15.915 -0.845 12
HY5 C14 C 15.799 -2.340 13
HY5 C15 C 14.447 -2.988 14
HY5 C16 C 17.037 -3.188 15
HY5 C18 C 18.160 -5.531 16
HY5 C20 C 18.045 -7.027 17
HY5 C21 C 18.693 -8.379 18
HY5 C22 C 17.197 -8.264 19
HY5 C23 C 17.185 -0.065 20
HY5 C24 C 16.838 1.386 21
HY5 C26 C 13.392 -0.453 22
HY5 C28 C 12.093 -2.703 23
HY5 C30 C 9.495 -2.703 24
HY5 C31 C 8.196 -1.953 25
HY5 C33 C 5.598 -1.953 26
HY5 C34 C 4.848 -3.252 27
HY5 C35 C 6.348 -0.654 28
HY5 C36 C 4.299 -1.203 29
HY5 C37 C 3.000 -1.953 30
HY5 C38 C 9.495 -4.203 31
HY5 C40 C 10.794 -4.953 32
HY5 C42 C 12.093 -4.203 33
HY5 C44 C 12.007 0.121 34
HY5 C46 C 11.432 1.506 35
HY5 C47 C 9.932 1.506 36
HY5 N17 N 16.922 -4.684 37
HY5 O06 O 14.134 7.403 38
HY5 O19 O 19.512 -4.883 39
HY5 O25 O 17.814 2.525 40
HY5 O27 O 13.392 -1.953 41
HY5 O29 O 10.794 -1.953 42
HY5 O32 O 6.897 -2.703 43
HY5 O39 O 8.196 -4.953 44
HY5 O41 O 10.794 -6.453 45
HY5 O43 O 13.392 -4.953 46
HY5 O45 O 10.946 -0.940 47
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
HY5 C36 C37 DOUBLE NONE 1
HY5 C36 C33 SINGLE NONE 2
HY5 C34 C33 SINGLE NONE 3
HY5 C33 O32 SINGLE NONE 4
HY5 C33 C35 SINGLE NONE 5
HY5 C40 O41 SINGLE BEGINWEDGE 6
HY5 O32 C31 SINGLE NONE 7
HY5 C38 O39 SINGLE BEGINDASH 8
HY5 C38 C40 SINGLE NONE 9
HY5 C38 C30 SINGLE NONE 10
HY5 C40 C42 SINGLE NONE 11
HY5 C42 O43 SINGLE BEGINDASH 12
HY5 C42 C28 SINGLE NONE 13
HY5 C30 C31 SINGLE BEGINWEDGE 14
HY5 C30 O29 SINGLE NONE 15
HY5 O29 C28 SINGLE NONE 16
HY5 C22 C21 SINGLE NONE 17
HY5 C22 C20 SINGLE NONE 18
HY5 C28 O27 SINGLE BEGINDASH 19
HY5 C21 C20 SINGLE NONE 20
HY5 C20 C18 SINGLE NONE 21
HY5 C26 O27 SINGLE BEGINWEDGE 22
HY5 C18 O19 DOUBLE NONE 23
HY5 C18 N17 SINGLE NONE 24
HY5 N17 C16 SINGLE NONE 25
HY5 C26 C12 SINGLE NONE 26
HY5 C26 C44 SINGLE NONE 27
HY5 C16 C14 SINGLE NONE 28
HY5 C44 O45 SINGLE BEGINDASH 29
HY5 C10 C11 SINGLE BEGINDASH 30
HY5 C12 C13 DOUBLE NONE 31
HY5 C12 C10 SINGLE NONE 32
HY5 C44 C46 SINGLE NONE 33
HY5 C14 C13 SINGLE NONE 34
HY5 C14 C15 SINGLE BEGINWEDGE 35
HY5 C13 C23 SINGLE NONE 36
HY5 C10 C24 SINGLE NONE 37
HY5 C10 C09 SINGLE ENDUPRIGHT 38
HY5 C24 C23 SINGLE NONE 39
HY5 C24 O25 SINGLE BEGINWEDGE 40
HY5 C46 C47 SINGLE BEGINDASH 41
HY5 C46 C01 SINGLE NONE 42
HY5 C09 C08 DOUBLE NONE 43
HY5 C01 C08 SINGLE ENDUPRIGHT 44
HY5 C01 C02 SINGLE NONE 45
HY5 C08 C04 SINGLE ENDUPRIGHT 46
HY5 C02 C03 SINGLE NONE 47
HY5 C04 C05 SINGLE BEGINDASH 48
HY5 C05 O06 SINGLE NONE 49
HY5 C04 C03 SINGLE NONE 50
HY5 C07 O06 SINGLE NONE 51
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
HY5 MurckoScaffold S1 scaffold 'O=C(NCCC1=C2C(/C=C3/CCC[C@H]3CC[C@@H]2O[C@@H]2CCCCO2)CC1)C1CC1' InChI=1S/C25H37NO3/c27-25(19-8-9-19)26-14-13-18-7-10-21-16-20-5-3-4-17(20)11-12-22(24(18)21)29-23-6-1-2-15-28-23/h16-17,19,21-23H,1-15H2,(H,26,27)/b20-16-/t17-,21+,22-,23+/m0/s1 WHKMWYZDPFAWOP-OHZWQMRNSA-N
HY5 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
HY5 cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
HY5 cyclopropane F3 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
HY5 pyranose F4 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
HY5 C01 S1 1
HY5 C02 S1 1
HY5 C03 S1 1
HY5 C04 S1 1
HY5 C08 S1 1
HY5 C09 S1 1
HY5 C10 S1 1
HY5 C12 S1 1
HY5 C13 S1 1
HY5 C14 S1 1
HY5 C16 S1 1
HY5 C18 S1 1
HY5 C20 S1 1
HY5 C21 S1 1
HY5 C22 S1 1
HY5 C23 S1 1
HY5 C24 S1 1
HY5 C26 S1 1
HY5 C28 S1 1
HY5 C30 S1 1
HY5 C38 S1 1
HY5 C40 S1 1
HY5 C42 S1 1
HY5 C44 S1 1
HY5 C46 S1 1
HY5 N17 S1 1
HY5 O19 S1 1
HY5 O27 S1 1
HY5 O29 S1 1
HY5 N17 F1 1
HY5 C18 F1 1
HY5 O19 F1 1
HY5 C20 F1 1
HY5 C01 F2 1
HY5 C08 F2 1
HY5 C04 F2 1
HY5 C03 F2 1
HY5 C02 F2 1
HY5 C20 F3 1
HY5 C22 F3 1
HY5 C21 F3 1
HY5 C38 F4 1
HY5 C30 F4 1
HY5 O29 F4 1
HY5 C28 F4 1
HY5 C42 F4 1
HY5 C40 F4 1
HY5 O27 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id HY5
_pdbe_chem_comp_rdkit_properties.exactmw 663.398
_pdbe_chem_comp_rdkit_properties.amw 663.849
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 23
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 47
_pdbe_chem_comp_rdkit_properties.NumAtoms 104
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.806
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 5
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 13
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 359.126
_pdbe_chem_comp_rdkit_properties.tpsa 167.170
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.000
_pdbe_chem_comp_rdkit_properties.CrippenMR 173.781
_pdbe_chem_comp_rdkit_properties.chi0v 22.530
_pdbe_chem_comp_rdkit_properties.chi1v 12.055
_pdbe_chem_comp_rdkit_properties.chi2v 6.042
_pdbe_chem_comp_rdkit_properties.chi3v 6.042
_pdbe_chem_comp_rdkit_properties.chi4v 3.818
_pdbe_chem_comp_rdkit_properties.chi0n 79.530
_pdbe_chem_comp_rdkit_properties.chi1n 40.043
_pdbe_chem_comp_rdkit_properties.chi2n 6.042
_pdbe_chem_comp_rdkit_properties.chi3n 6.042
_pdbe_chem_comp_rdkit_properties.chi4n 3.818
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.670
_pdbe_chem_comp_rdkit_properties.kappa1 7.879
_pdbe_chem_comp_rdkit_properties.kappa2 14.285
_pdbe_chem_comp_rdkit_properties.kappa3 7.298
_pdbe_chem_comp_rdkit_properties.Phi 2.395
#
_pdbe_chem_comp_external_mappings.comp_id HY5
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 145864197
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
HY5 C01 -2.241 -3.161 1.054 ETKDGv3 1
HY5 C02 -2.543 -4.241 2.102 ETKDGv3 2
HY5 C03 -3.622 -5.143 1.506 ETKDGv3 3
HY5 C04 -4.391 -4.282 0.498 ETKDGv3 4
HY5 C05 -4.801 -5.071 -0.759 ETKDGv3 5
HY5 C07 -5.980 -6.898 -1.523 ETKDGv3 6
HY5 C08 -3.477 -3.119 0.215 ETKDGv3 7
HY5 C09 -3.883 -2.075 -0.540 ETKDGv3 8
HY5 C10 -3.371 -0.631 -0.523 ETKDGv3 9
HY5 C11 -3.500 -0.063 -1.961 ETKDGv3 10
HY5 C12 -1.972 -0.285 0.002 ETKDGv3 11
HY5 C13 -2.040 0.921 0.623 ETKDGv3 12
HY5 C14 -0.862 1.815 0.998 ETKDGv3 13
HY5 C15 -0.540 1.654 2.490 ETKDGv3 14
HY5 C16 -1.145 3.293 0.648 ETKDGv3 15
HY5 C18 0.020 5.526 0.493 ETKDGv3 16
HY5 C20 1.273 6.344 0.562 ETKDGv3 17
HY5 C21 2.028 6.257 1.880 ETKDGv3 18
HY5 C22 1.214 7.496 1.555 ETKDGv3 19
HY5 C23 -3.448 1.380 0.837 ETKDGv3 20
HY5 C24 -4.294 0.193 0.416 ETKDGv3 21
HY5 C26 -0.624 -0.927 -0.390 ETKDGv3 22
HY5 C28 1.629 -0.789 0.378 ETKDGv3 23
HY5 C30 3.461 0.704 0.439 ETKDGv3 24
HY5 C31 3.358 1.658 -0.759 ETKDGv3 25
HY5 C33 4.783 3.362 -1.628 ETKDGv3 26
HY5 C34 6.210 3.531 -2.177 ETKDGv3 27
HY5 C35 3.794 3.701 -2.770 ETKDGv3 28
HY5 C36 4.605 4.324 -0.461 ETKDGv3 29
HY5 C37 5.228 4.146 0.709 ETKDGv3 30
HY5 C38 4.327 -0.558 0.130 ETKDGv3 31
HY5 C40 3.920 -1.711 1.065 ETKDGv3 32
HY5 C42 2.397 -1.999 0.963 ETKDGv3 33
HY5 C44 -0.673 -2.392 -0.900 ETKDGv3 34
HY5 C46 -0.953 -3.445 0.217 ETKDGv3 35
HY5 C47 -0.870 -4.866 -0.376 ETKDGv3 36
HY5 N17 0.065 4.113 0.732 ETKDGv3 37
HY5 O06 -5.627 -6.153 -0.379 ETKDGv3 38
HY5 O19 -1.066 6.083 0.178 ETKDGv3 39
HY5 O25 -4.637 -0.537 1.572 ETKDGv3 40
HY5 O27 0.252 -0.879 0.733 ETKDGv3 41
HY5 O29 2.157 0.403 0.931 ETKDGv3 42
HY5 O32 4.660 2.007 -1.204 ETKDGv3 43
HY5 O39 5.700 -0.274 0.245 ETKDGv3 44
HY5 O41 4.656 -2.860 0.735 ETKDGv3 45
HY5 O43 1.895 -2.307 2.239 ETKDGv3 46
HY5 O45 -1.554 -2.526 -1.985 ETKDGv3 47
HY5 H011 -2.118 -2.213 1.616 ETKDGv3 48
HY5 H021 -2.958 -3.756 3.015 ETKDGv3 49
HY5 H022 -1.644 -4.815 2.413 ETKDGv3 50
HY5 H032 -4.299 -5.528 2.299 ETKDGv3 51
HY5 H031 -3.142 -6.013 1.008 ETKDGv3 52
HY5 H041 -5.310 -3.889 0.989 ETKDGv3 53
HY5 H051 -3.893 -5.436 -1.284 ETKDGv3 54
HY5 H052 -5.358 -4.394 -1.443 ETKDGv3 55
HY5 H073 -6.548 -6.277 -2.251 ETKDGv3 56
HY5 H072 -5.081 -7.341 -2.007 ETKDGv3 57
HY5 H071 -6.639 -7.734 -1.211 ETKDGv3 58
HY5 H091 -4.840 -2.191 -1.042 ETKDGv3 59
HY5 H111 -2.830 -0.587 -2.669 ETKDGv3 60
HY5 H113 -4.541 -0.165 -2.337 ETKDGv3 61
HY5 H112 -3.236 1.017 -1.993 ETKDGv3 62
HY5 H141 0.019 1.534 0.394 ETKDGv3 63
HY5 H151 -0.379 0.586 2.744 ETKDGv3 64
HY5 H152 -1.376 2.037 3.114 ETKDGv3 65
HY5 H153 0.384 2.210 2.752 ETKDGv3 66
HY5 H162 -1.534 3.354 -0.392 ETKDGv3 67
HY5 H161 -1.916 3.706 1.335 ETKDGv3 68
HY5 H201 1.878 6.528 -0.350 ETKDGv3 69
HY5 H212 1.574 5.617 2.668 ETKDGv3 70
HY5 H211 3.124 6.411 1.796 ETKDGv3 71
HY5 H221 0.281 7.587 2.153 ETKDGv3 72
HY5 H222 1.830 8.377 1.277 ETKDGv3 73
HY5 H232 -3.671 2.250 0.183 ETKDGv3 74
HY5 H231 -3.621 1.660 1.899 ETKDGv3 75
HY5 H241 -5.218 0.550 -0.102 ETKDGv3 76
HY5 H261 -0.252 -0.290 -1.227 ETKDGv3 77
HY5 H281 1.784 -0.793 -0.728 ETKDGv3 78
HY5 H301 3.968 1.269 1.251 ETKDGv3 79
HY5 H312 2.816 1.161 -1.592 ETKDGv3 80
HY5 H311 2.749 2.531 -0.432 ETKDGv3 81
HY5 H342 6.962 3.252 -1.409 ETKDGv3 82
HY5 H341 6.365 2.871 -3.058 ETKDGv3 83
HY5 H343 6.395 4.583 -2.486 ETKDGv3 84
HY5 H353 4.021 4.700 -3.201 ETKDGv3 85
HY5 H351 3.867 2.942 -3.578 ETKDGv3 86
HY5 H352 2.745 3.729 -2.409 ETKDGv3 87
HY5 H361 3.938 5.174 -0.566 ETKDGv3 88
HY5 H372 5.891 3.301 0.868 ETKDGv3 89
HY5 H371 5.072 4.847 1.522 ETKDGv3 90
HY5 H381 4.141 -0.886 -0.917 ETKDGv3 91
HY5 H401 4.166 -1.400 2.109 ETKDGv3 92
HY5 H421 2.228 -2.862 0.277 ETKDGv3 93
HY5 H441 0.358 -2.604 -1.273 ETKDGv3 94
HY5 H461 -0.112 -3.388 0.938 ETKDGv3 95
HY5 H473 -0.863 -5.639 0.418 ETKDGv3 96
HY5 H472 -1.708 -5.058 -1.070 ETKDGv3 97
HY5 H471 0.079 -4.986 -0.941 ETKDGv3 98
HY5 H171 0.987 3.674 0.952 ETKDGv3 99
HY5 H251 -5.510 -0.975 1.391 ETKDGv3 100
HY5 H391 5.884 -0.031 1.190 ETKDGv3 101
HY5 H411 4.571 -3.484 1.503 ETKDGv3 102
HY5 H431 2.176 -3.237 2.441 ETKDGv3 103
HY5 H451 -1.175 -3.203 -2.605 ETKDGv3 104
#