Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : HAM    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O1P P O doub 1.55 N N
2 P O2P P O sing 1.55 N N
3 P O3P P O sing 1.61 N N
4 P O5' P O sing 1.61 N N
5 O3P C O C sing 1.34 N N
6 O5' C5' O C sing 1.43 N N
7 C5' C4' C C sing 1.53 N N
8 C5' H5'1 C H sing 1.09 N N
9 C5' H5'2 C H sing 1.09 N N
10 C4' O4' C O sing 1.44 N N
11 C4' C3' C C sing 1.54 N N
12 C4' H4' C H sing 1.09 N N
13 O4' C1' O C sing 1.45 N N
14 C3' O3' C O sing 1.43 N N
15 C3' C2' C C sing 1.55 N N
16 C3' H3' C H sing 1.09 N N
17 O3' HO3' O H sing 0.97 N N
18 C2' O2' C O sing 1.43 N N
19 C2' C1' C C sing 1.54 N N
20 C2' H2' C H sing 1.09 N N
21 O2' HO2' O H sing 0.97 N N
22 C1' N9 C N sing 1.46 N N
23 C1' H1' C H sing 1.09 N N
24 N9 C8 N C sing 1.36 N Y
25 N9 C4 N C sing 1.37 N Y
26 C8 N7 C N doub 1.3 N Y
27 C8 H8 C H sing 1.08 N N
28 N7 C5 N C sing 1.35 N Y
29 C5 C6 C C sing 1.41 N Y
30 C5 C4 C C doub 1.41 N Y
31 C6 N6 C N sing 1.38 N N
32 C6 N1 C N doub 1.33 N Y
33 N6 HN61 N H sing 0.97 N N
34 N6 HN62 N H sing 0.97 N N
35 N1 C2 N C sing 1.32 N Y
36 C2 N3 C N doub 1.32 N Y
37 C2 H2 C H sing 1.08 N N
38 N3 C4 N C sing 1.33 N Y
39 C O C O doub 1.21 N N
40 C CA C C sing 1.51 N N
41 CA N C N sing 1.47 N N
42 CA CB C C sing 1.53 N N
43 CA HA C H sing 1.09 N N
44 N HN1 N H sing 1.01 N N
45 N HN2 N H sing 1.01 N N
46 N HN3 N H sing 1.01 N N
47 CB CG C C sing 1.51 N N
48 CB HB1 C H sing 1.09 N N
49 CB HB2 C H sing 1.09 N N
50 CG CD2 C C doub 1.35 N Y
51 CG ND1 C N sing 1.34 N Y
52 CD2 NE2 C N sing 1.37 N Y
53 CD2 HD2 C H sing 1.08 N N
54 ND1 CE1 N C doub 1.31 N Y
55 CE1 NE2 C N sing 1.35 N Y
56 CE1 HE1 C H sing 1.08 N N
57 NE2 HE2 N H sing 0.97 N N