Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HAM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -2.115 -1.879 0.316
2 O1P O O1P N N N 0 -2.474 -3.363 0.079
3 O2P O O2P N N N -1 -1.912 -1.633 1.828
4 O3P O O3P N N N 0 -3.311 -0.945 -0.223
5 O4' O O4* N N N 0 2.013 -0.635 -0.343
6 O5' O O5* N N N 0 -0.758 -1.522 -0.473
7 C5' C C5* N N N 0 0.284 -2.294 0.127
8 C4' C C4* R N N 0 1.608 -2.001 -0.58
9 C3' C C3* S N N 0 2.743 -2.86 0.02
10 O3' O O3* N N N 0 2.979 -4.014 -0.789
11 C2' C C2* R N N 0 3.974 -1.923 0.002
12 O2' O O2* N N N 0 5.009 -2.472 -0.817
13 C1' C C1* R N N 0 3.434 -0.609 -0.604
14 N9 N N9 N Y N 0 4.051 0.547 0.05
15 C8 C C8 N Y N 0 3.549 1.234 1.115
16 N7 N N7 N Y N 0 4.356 2.203 1.439
17 C5 C C5 N Y N 0 5.427 2.194 0.61
18 C6 C C6 N Y N 0 6.582 2.984 0.479
19 N6 N N6 N N N 0 6.815 4.044 1.337
20 N1 N N1 N Y N 0 7.447 2.686 -0.485
21 C2 C C2 N Y N 0 7.232 1.676 -1.309
22 N3 N N3 N Y N 0 6.162 0.913 -1.227
23 C4 C C4 N Y N 0 5.242 1.135 -0.295
24 C C C N N N 0 -4.518 -0.995 0.362
25 O O O N N N 0 -4.708 -1.742 1.293
26 CA C CA S N N 0 -5.637 -0.121 -0.143
27 N N N N N N 1 -6.926 -0.671 0.298
28 CB C CB N N N 0 -5.469 1.294 0.413
29 CG C CG N Y N 0 -6.515 2.197 -0.187
30 CD2 C CD2 N Y N 0 -7.394 2.955 0.496
31 ND1 N ND1 N Y N 0 -6.731 2.392 -1.497
32 CE1 C CE1 N Y N 0 -7.715 3.236 -1.65
33 NE2 N NE2 N Y N 0 -8.155 3.614 -0.431
34 H5'1 H 1H5* N N N 0 0.049 -3.355 0.035
35 H5'2 H 2H5* N N N 0 0.369 -2.032 1.181
36 H4' H H4* N N N 0 1.516 -2.189 -1.65
37 H3' H H3* N N N 0 2.5 -3.154 1.041
38 HO3' H *HO3 N N N 0 3.694 -4.51 -0.367
39 H2' H H2* N N N 0 4.339 -1.753 1.015
40 HO2' H *HO2 N N N 0 5.26 -3.317 -0.42
41 HN62 H 2HN6 N N N 0 6.174 4.255 2.034
42 H1' H H1* N N N 0 3.621 -0.581 -1.678
43 H8 H H8 N N N 0 2.619 1.009 1.615
44 HN61 H 1HN6 N N N 0 7.618 4.58 1.239
45 H2 H H2 N N N 0 7.961 1.469 -2.078
46 HA H HA N N N 0 -5.61 -0.089 -1.232
47 HN1 H 1HN N N N 0 -7.675 -0.086 -0.039
48 HN2 H 2HN N N N 0 -7.036 -1.605 -0.068
49 HN3 H 3HN N N N 0 -6.951 -0.701 1.307
50 HB1 H 1HB N N N 0 -5.585 1.275 1.497
51 HB2 H 2HB N N N 0 -4.477 1.669 0.16
52 HD2 H HD2 N N N 0 -7.481 3.028 1.57
53 HE1 H HE1 N N N 0 -8.109 3.578 -2.596
54 HE2 H HE2 N N N 0 -8.876 4.236 -0.247