Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : H9Z    

Bonds between two atoms of the molecule

Total Number of Bonds: 71


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CAY NAZ C N doub 1.32 N Y
2 CAY CAX C C sing 1.38 N Y
3 NAZ CBA N C sing 1.32 N Y
4 CAX CAW C C doub 1.4 N Y
5 CBA CAV C C doub 1.39 N Y
6 CAW CAV C C sing 1.41 N Y
7 CAW CBB C C sing 1.48 N N
8 CAV NAQ C N sing 1.39 N N
9 CBB NBD C N sing 1.35 N N
10 CBB OBC C O doub 1.22 N N
11 NAQ CAA N C sing 1.4 N N
12 NBD CBE N C sing 1.47 N N
13 CAF CAA C C doub 1.38 N Y
14 CAF CAE C C sing 1.4 N Y
15 CBI CBH C C sing 1.53 N N
16 CBI CBJ C C sing 1.53 N N
17 CAA CAB C C sing 1.4 N Y
18 NAM CAE N C doub 1.34 N Y
19 NAM CAN N C sing 1.31 N Y
20 CAE CAD C C sing 1.42 N Y
21 CAN CAO C C doub 1.39 N Y
22 CAB CAC C C doub 1.38 N Y
23 CBH NBG C N sing 1.47 N N
24 CBJ CBE C C sing 1.53 N N
25 CAD CAC C C sing 1.42 N Y
26 CAD NAP C N doub 1.33 N Y
27 NBG CBF N C sing 1.47 N N
28 NBG CBK N C sing 1.47 N N
29 CAC CAG C C sing 1.48 N N
30 CBE CBF C C sing 1.53 N N
31 CAO NAP C N sing 1.32 N Y
32 CAL CAG C C doub 1.4 N Y
33 CAL CAK C C sing 1.36 N Y
34 CAG CAH C C sing 1.39 N Y
35 CAK CAJ C C doub 1.4 N Y
36 CAH CAI C C doub 1.39 N Y
37 CAJ CAI C C sing 1.41 N Y
38 CAJ CAR C C sing 1.46 N Y
39 CAI NAT C N sing 1.38 N Y
40 CAR CAS C C doub 1.34 N Y
41 NAT CAS N C sing 1.37 N Y
42 NAT CAU N C sing 1.46 N N
43 CBJ H1 C H sing 1.09 N N
44 CBJ H2 C H sing 1.09 N N
45 CBI H3 C H sing 1.09 N N
46 CBI H4 C H sing 1.09 N N
47 CBH H5 C H sing 1.09 N N
48 CBH H6 C H sing 1.09 N N
49 CBK H8 C H sing 1.09 N N
50 CBK H9 C H sing 1.09 N N
51 CBK H10 C H sing 1.09 N N
52 CBF H11 C H sing 1.09 N N
53 CBF H12 C H sing 1.09 N N
54 CBE H13 C H sing 1.09 N N
55 NBD H14 N H sing 0.97 N N
56 CAX H15 C H sing 1.08 N N
57 CAY H16 C H sing 1.08 N N
58 CBA H17 C H sing 1.08 N N
59 NAQ H18 N H sing 0.97 N N
60 CAB H19 C H sing 1.08 N N
61 CAF H20 C H sing 1.08 N N
62 CAN H21 C H sing 1.08 N N
63 CAO H22 C H sing 1.08 N N
64 CAH H23 C H sing 1.08 N N
65 CAU H24 C H sing 1.09 N N
66 CAU H25 C H sing 1.09 N N
67 CAU H26 C H sing 1.09 N N
68 CAS H27 C H sing 1.08 N N
69 CAR H28 C H sing 1.08 N N
70 CAK H29 C H sing 1.08 N N
71 CAL H30 C H sing 1.08 N N