Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : GU5    

Bonds between two atoms of the molecule

Total Number of Bonds: 33


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 C1 O C sing 1.43 N N
2 O1 HO1 O H sing 0.97 N N
3 C1 C2 C C sing 1.53 N N
4 C1 O5 C O sing 1.43 N N
5 C1 H1 C H sing 1.09 N N
6 C2 O2 C O sing 1.43 N N
7 C2 C3 C C sing 1.53 N N
8 C2 H2 C H sing 1.1 N N
9 O2 C7 O C sing 1.42 N N
10 C7 H71 C H sing 1.09 N N
11 C7 H72 C H sing 1.09 N N
12 C7 H73 C H sing 1.09 N N
13 C3 O3 C O sing 1.42 N N
14 C3 C4 C C sing 1.53 N N
15 C3 H3 C H sing 1.1 N N
16 O3 C8 O C sing 1.42 N N
17 C8 H81 C H sing 1.09 N N
18 C8 H82 C H sing 1.09 N N
19 C8 H83 C H sing 1.09 N N
20 O5 C5 O C sing 1.43 N N
21 C5 C6 C C sing 1.53 N N
22 C5 C4 C C sing 1.54 N N
23 C5 H5 C H sing 1.1 N N
24 C6 O6 C O sing 1.42 N N
25 C6 H61 C H sing 1.09 N N
26 C6 H62 C H sing 1.09 N N
27 O6 S6 O S sing 1.64 N N
28 S6 O32 S O doub 1.46 N N
29 S6 O33 S O doub 1.46 N N
30 S6 O31 S O sing 1.46 N N
31 C4 O4 C O sing 1.43 N N
32 C4 H4 C H sing 1.09 N N
33 O4 HO4 O H sing 0.97 N N