Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GU5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1 O O1 N N Y 0 -3.753 1.372 -3.369
2 C1 C C1 S N N 0 -2.975 1.013 -2.228
3 C2 C C2 R N N 0 -1.923 2.1 -1.998
4 O2 O O2 N N N 0 -1.147 2.274 -3.184
5 C7 C C7 N N N 0 -0.19 3.313 -3.032
6 C3 C C3 S N N 0 -0.999 1.74 -0.832
7 O3 O O3 N N N 0 -1.722 1.906 0.384
8 C8 C C8 N N N 0 -0.9 1.646 1.509
9 O5 O O5 N N N 0 -2.351 -0.253 -2.431
10 C5 C C5 R N N 0 -1.558 -0.718 -1.331
11 C6 C C6 N N N 0 -2.439 -1.157 -0.163
12 O6 O O6 N N N 0 -1.617 -1.764 0.817
13 S6 S S6 N N N 0 -2.287 -2.342 2.202
14 O32 O O32 N N N 0 -3.232 -3.354 1.732
15 O33 O O33 N N N 0 -2.919 -1.174 2.815
16 O31 O O31 N N N -1 -1.157 -2.884 2.955
17 H1 H H1 N N N 0 -3.663 0.946 -1.379
18 C4 C C4 R N N 0 -0.475 0.302 -0.94
19 O4 O O4 N N N 0 0.541 0.287 -1.947
20 HO1 H HO1 N N Y 0 -3.654 0.65 -4.008
21 H2 H H2 N N N 0 -2.428 3.054 -1.81
22 H71 H H71 N N N 0 0.805 2.878 -2.909
23 H72 H H72 N N N 0 -0.445 3.919 -2.159
24 H73 H H73 N N N 0 -0.203 3.942 -3.925
25 H3 H H3 N N N 0 -0.152 2.436 -0.813
26 H81 H H81 N N N 0 0.086 2.09 1.352
27 H82 H H82 N N N 0 -0.806 0.566 1.652
28 H83 H H83 N N N 0 -1.359 2.09 2.396
29 H5 H H5 N N N 0 -1.058 -1.621 -1.702
30 H61 H H61 N N N 0 -3.181 -1.877 -0.507
31 H62 H H62 N N N 0 -2.939 -0.292 0.271
32 H4 H H4 N N N 0 -0.001 -0.005 -0.002
33 HO4 H HO4 N N Y 0 1.167 -0.41 -1.697