Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : GP3    

Bonds between two atoms of the molecule

Total Number of Bonds: 83


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N9A C8A N C sing 1.36 N Y
2 N9A C4A N C sing 1.37 N Y
3 N9A C1D N C sing 1.46 N N
4 C8A N7A C N doub 1.3 N Y
5 C8A H8A C H sing 1.08 N N
6 N7A C5A N C sing 1.36 N Y
7 C5A C6A C C sing 1.41 N N
8 C5A C4A C C doub 1.4 N Y
9 C6A O6A C O doub 1.22 N N
10 C6A N1A C N sing 1.35 N N
11 N1A C2A N C sing 1.36 N N
12 N1A H1A N H sing 0.97 N N
13 C2A N2A C N sing 1.37 N N
14 C2A N3A C N doub 1.31 N N
15 N2A H21A N H sing 0.97 N N
16 N2A H22A N H sing 0.97 N N
17 N3A C4A N C sing 1.34 N N
18 O5D C5D O C sing 1.43 N N
19 O5D PA O P sing 1.61 N N
20 C5D C4D C C sing 1.53 N N
21 C5D H51A C H sing 1.09 N N
22 C5D H52A C H sing 1.09 N N
23 C4D O4D C O sing 1.44 N N
24 C4D C3D C C sing 1.54 N N
25 C4D H4D C H sing 1.09 N N
26 O4D C1D O C sing 1.44 N N
27 C3D O3D C O sing 1.43 N N
28 C3D C2D C C sing 1.55 N N
29 C3D H3D C H sing 1.09 N N
30 O3D HO3A O H sing 0.97 N N
31 C2D O2D C O sing 1.43 N N
32 C2D C1D C C sing 1.54 N N
33 C2D H2D C H sing 1.09 N N
34 O2D HO2A O H sing 0.97 N N
35 C1D H1D C H sing 1.09 N N
36 PA O1A P O doub 1.48 N N
37 PA O2A P O sing 1.61 N N
38 PA O3A P O sing 1.61 N N
39 O2A HOA2 O H sing 0.97 N N
40 O3A PB O P sing 1.61 N N
41 PB O1B P O doub 1.48 N N
42 PB O2B P O sing 1.61 N N
43 PB O3B P O sing 1.61 N N
44 O2B HOB2 O H sing 0.97 N N
45 O3B PG O P sing 1.61 N N
46 PG O1G P O doub 1.48 N N
47 PG O2G P O sing 1.61 N N
48 PG O5E P O sing 1.61 N N
49 O2G HOG2 O H sing 0.97 N N
50 O5E C5E O C sing 1.43 N N
51 C5E C4E C C sing 1.53 N N
52 C5E H51B C H sing 1.09 N N
53 C5E H52B C H sing 1.09 N N
54 C4E O4E C O sing 1.44 N N
55 C4E C3E C C sing 1.54 N N
56 C4E H4E C H sing 1.09 N N
57 O4E C1E O C sing 1.44 N N
58 C3E O3E C O sing 1.43 N N
59 C3E C2E C C sing 1.55 N N
60 C3E H3E C H sing 1.09 N N
61 O3E HO3B O H sing 0.97 N N
62 C2E O2E C O sing 1.43 N N
63 C2E C1E C C sing 1.55 N N
64 C2E H2E C H sing 1.09 N N
65 O2E HO2B O H sing 0.97 N N
66 C1E N9B C N sing 1.46 N N
67 C1E H1E C H sing 1.09 N N
68 N9B C8B N C sing 1.36 N Y
69 N9B C4B N C sing 1.37 N Y
70 C8B N7B C N doub 1.3 N Y
71 C8B H8B C H sing 1.08 N N
72 N7B C5B N C sing 1.35 N Y
73 C5B C6B C C sing 1.41 N N
74 C5B C4B C C doub 1.4 N Y
75 C6B O6B C O doub 1.22 N N
76 C6B N1B C N sing 1.35 N N
77 N1B C2B N C sing 1.36 N N
78 N1B H1B N H sing 0.97 N N
79 C2B N2B C N sing 1.37 N N
80 C2B N3B C N doub 1.31 N N
81 N2B H21B N H sing 0.97 N N
82 N2B H22B N H sing 0.97 N N
83 N3B C4B N C sing 1.34 N N