Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GP3

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 78


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N9A N AN9 N Y N 0 0.224 -0.696 -8.635
2 C8A C AC8 N Y N 0 -0.954 -1.289 -8.287
3 N7A N AN7 N Y N 0 -1.243 -2.23 -9.138
4 C5A C AC5 N Y N 0 -0.27 -2.296 -10.08
5 C6A C AC6 N N N 0 -0.057 -3.105 -11.221
6 O6A O AO6 N N N 0 -0.857 -3.971 -11.531
7 N1A N AN1 N N N 0 1.051 -2.889 -11.962
8 C2A C AC2 N N N 0 1.941 -1.921 -11.603
9 N2A N AN2 N N N 0 3.062 -1.728 -12.372
10 N3A N AN3 N N N 0 1.755 -1.164 -10.546
11 C4A C AC4 N Y N 0 0.677 -1.315 -9.767
12 O5D O AO5* N N N 0 0.413 1.078 -3.75
13 C5D C AC5* N N N 0 0.003 1.996 -4.765
14 C4D C AC4* R N N 0 0.79 1.722 -6.048
15 O4D O AO4* N N N 0 0.522 0.386 -6.526
16 C3D C AC3* S N N 0 0.311 2.651 -7.185
17 O3D O AO3* N N N 0 1.185 3.774 -7.316
18 C2D C AC2* R N N 0 0.375 1.763 -8.45
19 O2D O AO2* N N N 0 1.289 2.312 -9.401
20 C1D C AC1* R N N 0 0.883 0.402 -7.925
21 PA P PA R N N 0 -0.45 1.422 -2.435
22 O1A O O1A N N N 0 -0.182 2.817 -2.02
23 O2A O O2A N N N 0 -2.017 1.252 -2.762
24 O3A O O3A N N N 0 -0.038 0.42 -1.245
25 PB P PB N N N 0 -0.935 0.819 0.03
26 O1B O O1B N N N 0 -2.368 0.672 -0.307
27 O2B O O2B N N N 0 -0.635 2.347 0.44
28 O3B O O3B N N N 0 -0.573 -0.148 1.265
29 PG P PG R N N 0 -1.501 0.305 2.5
30 O1G O O1G N N N 0 -2.926 0.165 2.123
31 O2G O O2G N N N 0 -1.192 1.841 2.868
32 O5E O BO5* N N N 0 -1.19 -0.625 3.776
33 C5E C BC5* N N N 0 -2.041 -0.176 4.832
34 C4E C BC4* R N N 0 -1.793 -1.024 6.082
35 O4E O BO4* N N N 0 -0.432 -0.869 6.516
36 C3E C BC3* S N N 0 -2.701 -0.542 7.23
37 O3E O BO3* N N N 0 -3.567 -1.591 7.666
38 C2E C BC2* R N N 0 -1.708 -0.154 8.357
39 O2E O BO2* N N N 0 -2.194 -0.578 9.632
40 C1E C BC1* R N N 0 -0.438 -0.947 7.957
41 N9B N BN9 N Y N 0 0.762 -0.317 8.513
42 C8B C BC8 N Y N 0 1.473 0.701 7.949
43 N7B N BN7 N Y N 0 2.48 1.012 8.713
44 C5B C BC5 N Y N 0 2.475 0.214 9.808
45 C6B C BC6 N N N 0 3.304 0.102 10.949
46 O6B O BO6 N N N 0 4.271 0.83 11.092
47 N1B N BN1 N N N 0 2.997 -0.832 11.875
48 C2B C BC2 N N N 0 1.913 -1.64 11.705
49 N2B N BN2 N N N 0 1.626 -2.58 12.663
50 N3B N BN3 N N N 0 1.135 -1.546 10.65
51 C4B C BC4 N Y N 0 1.373 -0.64 9.694
52 H8A H AH8 N N N 0 -1.557 -1.019 -7.432
53 H1A H AH1 N N N 0 1.219 -3.431 -12.749
54 H21A H AH21 N N N 0 3.702 -1.041 -12.132
55 H22A H AH22 N N N 0 3.215 -2.282 -13.154
56 H51A H AH51 N N N 0 0.196 3.016 -4.432
57 H52A H AH52 N N N 0 -1.061 1.873 -4.959
58 H4D H AH4* N N N 0 1.858 1.855 -5.874
59 H3D H AH3* N N N 0 -0.71 2.983 -7.002
60 HO3A H AHO3 N N N 0 0.837 4.317 -8.037
61 H2D H AH2* N N N 0 -0.614 1.655 -8.892
62 HO2A H AHO2 N N N 0 0.95 3.184 -9.644
63 H1D H AH1* N N N 0 1.965 0.331 -8.038
64 HOA2 H 2HOA N N N 0 -2.148 0.331 -3.028
65 HOB2 H 2HOB N N N 0 0.306 2.4 0.653
66 HOG2 H 2HOG N N N 0 -0.256 1.889 3.107
67 H51B H BH51 N N N 0 -1.824 0.868 5.054
68 H52B H BH52 N N N 0 -3.082 -0.274 4.527
69 H4E H BH4* N N N 0 -1.996 -2.072 5.864
70 H3E H BH3* N N N 0 -3.282 0.325 6.918
71 HO3B H BHO3 N N N 0 -4.064 -1.248 8.422
72 H2E H BH2* N N N 0 -1.514 0.918 8.354
73 HO2B H BHO2 N N N 0 -2.981 -0.049 9.821
74 H1E H BH1* N N N 0 -0.513 -1.983 8.286
75 H8B H BH8 N N N 0 1.237 1.178 7.009
76 H1B H BH1 N N N 0 3.551 -0.927 12.666
77 H21B H BH21 N N N 0 0.858 -3.163 12.555
78 H22B H BH22 N N N 0 2.191 -2.662 13.447