Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : GDS    

Bonds between two atoms of the molecule

Total Number of Bonds: 71


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 CA1 N C sing 1.47 N N
2 N1 HN11 N H sing 1.01 N N
3 N1 HN12 N H sing 1.01 N N
4 CA1 C1 C C sing 1.51 N N
5 CA1 CB1 C C sing 1.53 N N
6 CA1 HA1 C H sing 1.09 N N
7 C1 OE1 C O doub 1.21 N N
8 C1 OE2 C O sing 1.34 N N
9 OE2 HO2 O H sing 0.97 N N
10 CB1 CG1 C C sing 1.53 N N
11 CB1 HB11 C H sing 1.09 N N
12 CB1 HB12 C H sing 1.09 N N
13 CG1 CD1 C C sing 1.51 N N
14 CG1 HG11 C H sing 1.09 N N
15 CG1 HG12 C H sing 1.09 N N
16 CD1 O1 C O doub 1.21 N N
17 CD1 N2 C N sing 1.35 N N
18 N2 CA2 N C sing 1.46 N N
19 N2 HN2 N H sing 0.97 N N
20 CA2 C2 C C sing 1.51 N N
21 CA2 CB2 C C sing 1.53 N N
22 CA2 HA2 C H sing 1.09 N N
23 C2 O2 C O doub 1.21 N N
24 C2 N3 C N sing 1.35 N N
25 CB2 SG2 C S sing 1.81 N N
26 CB2 HB21 C H sing 1.09 N N
27 CB2 HB22 C H sing 1.09 N N
28 SG2 SG5 S S sing 2.05 N N
29 N3 CA3 N C sing 1.47 N N
30 N3 HN3 N H sing 0.97 N N
31 CA3 C3 C C sing 1.51 N N
32 CA3 HA31 C H sing 1.09 N N
33 CA3 HA32 C H sing 1.09 N N
34 C3 OE3 C O doub 1.21 N N
35 C3 OE4 C O sing 1.34 N N
36 OE4 HO4 O H sing 0.97 N N
37 N4 CA4 N C sing 1.47 N N
38 N4 C5 N C sing 1.35 N N
39 N4 HN4 N H sing 0.97 N N
40 CA4 C4 C C sing 1.51 N N
41 CA4 HA41 C H sing 1.09 N N
42 CA4 HA42 C H sing 1.09 N N
43 C4 OE5 C O doub 1.21 N N
44 C4 OE6 C O sing 1.34 N N
45 OE6 HO6 O H sing 0.97 N N
46 C5 O5 C O doub 1.21 N N
47 C5 CA5 C C sing 1.51 N N
48 CA5 N5 C N sing 1.46 N N
49 CA5 CB5 C C sing 1.53 N N
50 CA5 HA5 C H sing 1.09 N N
51 N5 CD6 N C sing 1.35 N N
52 N5 HN5 N H sing 0.97 N N
53 CB5 SG5 C S sing 1.81 N N
54 CB5 HB51 C H sing 1.09 N N
55 CB5 HB52 C H sing 1.09 N N
56 CA6 C6 C C sing 1.51 N N
57 CA6 N6 C N sing 1.47 N N
58 CA6 CB6 C C sing 1.53 N N
59 CA6 HA6 C H sing 1.09 N N
60 C6 OE7 C O doub 1.21 N N
61 C6 OE8 C O sing 1.34 N N
62 OE8 HO8 O H sing 0.97 N N
63 N6 HN61 N H sing 1.01 N N
64 N6 HN62 N H sing 1.01 N N
65 CB6 CG6 C C sing 1.53 N N
66 CB6 HB61 C H sing 1.09 N N
67 CB6 HB62 C H sing 1.09 N N
68 CG6 CD6 C C sing 1.51 N N
69 CG6 HG61 C H sing 1.09 N N
70 CG6 HG62 C H sing 1.09 N N
71 CD6 O6 C O doub 1.21 N N