Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GDS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 72


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -1.103 2.393 6.466
2 CA1 C CA1 S N N 0 -2.373 1.986 5.848
3 C1 C C1 N N N 0 -3.436 1.876 6.911
4 OE1 O OE1 N N N 0 -3.132 1.571 8.04
5 OE2 O OE2 N N N 0 -4.72 2.116 6.602
6 CB1 C CB1 N N N 0 -2.195 0.631 5.162
7 CG1 C CG1 N N N 0 -1.115 0.743 4.083
8 CD1 C CD1 N N N 0 -0.94 -0.592 3.407
9 O1 O O1 N N N 0 -1.612 -1.54 3.754
10 N2 N N2 N N N 0 -0.036 -0.733 2.417
11 CA2 C CA2 R N N 0 0.133 -2.031 1.76
12 C2 C C2 N N N 0 1.182 -2.829 2.49
13 O2 O O2 N N N 0 1.122 -4.04 2.504
14 CB2 C CB2 N N N 0 0.573 -1.815 0.311
15 SG2 S SG2 N N N 0 -0.689 -0.853 -0.567
16 N3 N N3 N N N 0 2.189 -2.197 3.126
17 CA3 C CA3 N N N 0 3.209 -2.974 3.836
18 C3 C C3 N N N 0 4.212 -2.036 4.456
19 OE3 O OE3 N N N 0 4.088 -0.842 4.32
20 OE4 O OE4 N N N 0 5.244 -2.528 5.161
21 N4 N N4 N N N 0 2.189 2.197 -3.126
22 CA4 C CA4 N N N 0 3.21 2.973 -3.835
23 C4 C C4 N N N 0 4.213 2.035 -4.456
24 OE5 O OE5 N N N 0 4.088 0.841 -4.32
25 OE6 O OE6 N N N 0 5.245 2.527 -5.16
26 C5 C C5 N N N 0 1.183 2.829 -2.49
27 O5 O O5 N N N 0 1.123 4.04 -2.504
28 CA5 C CA5 R N N 0 0.134 2.031 -1.76
29 N5 N N5 N N N 0 -0.036 0.733 -2.417
30 CB5 C CB5 N N N 0 0.573 1.815 -0.311
31 SG5 S SG5 N N N 0 -0.689 0.854 0.566
32 CA6 C CA6 S N N 0 -2.372 -1.986 -5.849
33 C6 C C6 N N N 0 -3.435 -1.875 -6.911
34 OE7 O OE7 N N N 0 -3.132 -1.571 -8.04
35 OE8 O OE8 N N N 0 -4.72 -2.115 -6.603
36 N6 N N6 N N N 0 -1.103 -2.392 -6.466
37 CB6 C CB6 N N N 0 -2.194 -0.63 -5.162
38 CG6 C CG6 N N N 0 -1.115 -0.742 -4.084
39 CD6 C CD6 N N N 0 -0.94 0.592 -3.407
40 O6 O O6 N N N 0 -1.612 1.54 -3.754
41 HN11 H 1HN1 N N N 0 -0.402 2.353 5.742
42 HN12 H 2HN1 N N N 0 -0.866 1.678 7.138
43 HA1 H HA1 N N N 0 -2.672 2.731 5.11
44 HO2 H HO2 N N N 0 -5.402 2.045 7.284
45 HB11 H 1HB1 N N N 0 -1.895 -0.113 5.9
46 HB12 H 2HB1 N N N 0 -3.137 0.329 4.703
47 HG11 H 1HG1 N N N 0 -1.415 1.487 3.346
48 HG12 H 2HG1 N N N 0 -0.174 1.044 4.542
49 HN2 H HN2 N N N 0 0.5 0.025 2.14
50 HA2 H HA2 N N N 0 -0.811 -2.573 1.776
51 HB21 H 1HB2 N N N 0 1.518 -1.273 0.295
52 HB22 H 2HB2 N N N 0 0.7 -2.781 -0.177
53 HN3 H HN3 N N N 0 2.237 -1.229 3.115
54 HA31 H 1HA3 N N N 0 2.735 -3.568 4.617
55 HA32 H 2HA3 N N N 0 3.716 -3.635 3.133
56 HO4 H HO4 N N N 0 5.887 -1.926 5.559
57 HN4 H HN4 N N N 0 2.238 1.228 -3.115
58 HA41 H 1HA4 N N N 0 2.736 3.568 -4.616
59 HA42 H 2HA4 N N N 0 3.717 3.634 -3.133
60 HO6 H HO6 N N N 0 5.888 1.925 -5.558
61 HA5 H HA5 N N N 0 -0.811 2.573 -1.776
62 HN5 H HN5 N N N 0 0.501 -0.025 -2.14
63 HB51 H 1HB5 N N N 0 0.7 2.78 0.177
64 HB52 H 2HB5 N N N 0 1.519 1.272 -0.295
65 HA6 H HA6 N N N 0 -2.672 -2.73 -5.111
66 HO8 H HO8 N N N 0 -5.402 -2.044 -7.285
67 HN61 H 1HN6 N N N 0 -0.866 -1.678 -7.139
68 HN62 H 2HN6 N N N 0 -0.402 -2.353 -5.742
69 HB61 H 1HB6 N N N 0 -3.136 -0.328 -4.704
70 HB62 H 2HB6 N N N 0 -1.894 0.113 -5.9
71 HG61 H 1HG6 N N N 0 -0.173 -1.044 -4.542
72 HG62 H 2HG6 N N N 0 -1.415 -1.487 -3.346