Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : G9M    

Bonds between two atoms of the molecule

Total Number of Bonds: 61


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O C O C doub 1.21 N N
2 CA C C C sing 1.51 N N
3 C N13 C N sing 1.35 N N
4 N12 CA N C sing 1.47 N N
5 CA HA C H sing 1.09 N N
6 CA HAA C H sing 1.09 N N
7 CAM N11 C N sing 1.48 N N
8 CAN N11 C N sing 1.48 N N
9 N11 CBB N C sing 1.47 N N
10 CAO N12 C N sing 1.47 N N
11 CAP N12 C N sing 1.47 N N
12 N13 CAV N C sing 1.39 N N
13 N13 HN13 N H sing 0.97 N N
14 CAX N14 C N sing 1.38 N N
15 N14 CAW N C sing 1.35 N N
16 N14 HN14 N H sing 0.97 N N
17 CAV N15 C N doub 1.32 N Y
18 N15 CBA N C sing 1.33 N Y
19 CAW OAB C O doub 1.22 N N
20 CAD CAC C C doub 1.39 N Y
21 CAF CAC C C sing 1.38 N Y
22 CAC HAC C H sing 1.08 N N
23 CAG CAD C C sing 1.38 N Y
24 CAD HAD C H sing 1.08 N N
25 CAE CAV C C sing 1.39 N Y
26 CAE CAH C C doub 1.38 N Y
27 CAE HAE C H sing 1.08 N N
28 CAY CAF C C doub 1.39 N Y
29 CAF HAF C H sing 1.08 N N
30 CAZ CAG C C doub 1.39 N Y
31 CAG HAG C H sing 1.08 N N
32 CAH CAX C C sing 1.4 N Y
33 CAH HAH C H sing 1.08 N N
34 CAI CAJ C C sing 1.55 N N
35 CAI CAM C C sing 1.54 N N
36 CAI HAI C H sing 1.09 N N
37 CAI HAIA C H sing 1.09 N N
38 CAJ CAN C C sing 1.55 N N
39 CAJ HAJ C H sing 1.09 N N
40 CAJ HAJA C H sing 1.09 N N
41 CBB CAK C C sing 1.53 N N
42 CAK CAO C C sing 1.53 N N
43 CAK HAK C H sing 1.09 N N
44 CAK HAKA C H sing 1.09 N N
45 CBB CAL C C sing 1.53 N N
46 CAL CAP C C sing 1.53 N N
47 CAL HAL C H sing 1.09 N N
48 CAL HALA C H sing 1.09 N N
49 CAM HAM C H sing 1.09 N N
50 CAM HAMA C H sing 1.09 N N
51 CAN HAN C H sing 1.09 N N
52 CAN HANA C H sing 1.09 N N
53 CAO HAO C H sing 1.09 N N
54 CAO HAOA C H sing 1.09 N N
55 CAP HAP C H sing 1.09 N N
56 CAP HAPA C H sing 1.09 N N
57 CAW CAY C C sing 1.47 N N
58 CAX CBA C C doub 1.4 N Y
59 CAZ CAY C C sing 1.41 N Y
60 CBA CAZ C C sing 1.48 N Y
61 CBB HBB C H sing 1.09 N N