data_G9M
#
_chem_comp.id G9M
_chem_comp.name N-(6-oxo-5,6-dihydrobenzo[c][1,5]naphthyridin-2-yl)-2-(4-pyrrolidin-1-ylpiperidin-1-yl)acetamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H27 N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-11-03
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 405.493
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G9M
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3KI5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G9M C C C 0 1 N N N N N N 39.648 69.819 1.289 0.203 -2.047 -0.198 C G9M 1
G9M O O O 0 1 N N N N N N 39.211 68.868 0.631 0.079 -0.849 -0.341 O G9M 2
G9M CA CA C 0 1 N N N N N N 39.940 71.165 0.631 1.577 -2.666 -0.190 CA G9M 3
G9M N11 N11 N 0 1 N N N N N N 38.668 72.062 -4.832 5.879 1.006 -0.123 N11 G9M 4
G9M N12 N12 N 0 1 N N N N N N 39.535 71.129 -0.776 2.588 -1.617 -0.377 N12 G9M 5
G9M N13 N13 N 0 1 N N N N N N 39.900 69.817 2.601 -0.887 -2.824 -0.041 N13 G9M 6
G9M N14 N14 N 0 1 N N N N N N 39.480 65.722 6.234 -5.855 -0.471 0.380 N14 G9M 7
G9M N15 N15 N 0 1 Y N N N N N 40.257 68.932 4.684 -2.279 -0.936 -0.089 N15 G9M 8
G9M OAB OAB O 0 1 N N N N N N 39.937 65.018 8.348 -7.122 1.349 0.328 OAB G9M 9
G9M CAC CAC C 0 1 Y N N N N N 41.758 68.536 9.438 -3.883 3.859 -0.509 CAC G9M 10
G9M CAD CAD C 0 1 Y N N N N N 41.841 69.554 8.491 -2.631 3.276 -0.621 CAD G9M 11
G9M CAE CAE C 0 1 Y N N N N N 39.140 67.584 3.071 -3.256 -3.042 0.342 CAE G9M 12
G9M CAF CAF C 0 1 Y N N N N N 41.152 67.325 9.118 -4.995 3.090 -0.235 CAF G9M 13
G9M CAG CAG C 0 1 Y N N N N N 41.318 69.363 7.215 -2.473 1.914 -0.461 CAG G9M 14
G9M CAH CAH C 0 1 Y N N N N N 39.041 66.551 4.003 -4.505 -2.464 0.449 CAH G9M 15
G9M CAI CAI C 0 1 N N N N N N 38.411 73.753 -6.550 8.246 1.532 0.015 CAI G9M 16
G9M CAJ CAJ C 0 1 N N N N N N 37.137 72.932 -6.428 7.406 2.638 0.694 CAJ G9M 17
G9M CAK CAK C 0 1 N N N N N N 40.288 71.268 -3.119 4.911 -1.089 -0.947 CAK G9M 18
G9M CAL CAL C 0 1 N N N N N N 37.990 72.076 -2.427 3.565 0.462 0.471 CAL G9M 19
G9M CAM CAM C 0 1 N N N N N N 39.436 72.927 -5.762 7.221 0.494 -0.479 CAM G9M 20
G9M CAN CAN C 0 1 N N N N N N 37.241 72.412 -5.002 6.085 1.906 1.040 CAN G9M 21
G9M CAO CAO C 0 1 N N N N N N 40.706 71.375 -1.640 3.915 -2.201 -0.612 CAO G9M 22
G9M CAP CAP C 0 1 N N N N N N 38.487 72.146 -0.976 2.608 -0.695 0.765 CAP G9M 23
G9M CAV CAV C 0 1 Y N N N N N 39.758 68.783 3.440 -2.149 -2.240 0.068 CAV G9M 24
G9M CAW CAW C 0 1 N N N N N N 40.010 65.920 7.515 -6.015 0.856 0.225 CAW G9M 25
G9M CAX CAX C 0 1 Y N N N N N 39.564 66.742 5.279 -4.617 -1.082 0.279 CAX G9M 26
G9M CAY CAY C 0 1 Y N N N N N 40.624 67.130 7.840 -4.856 1.713 -0.068 CAY G9M 27
G9M CAZ CAZ C 0 1 Y N N N N N 40.709 68.149 6.884 -3.581 1.122 -0.184 CAZ G9M 28
G9M CBA CBA C 0 1 Y N N N N N 40.179 67.955 5.606 -3.462 -0.338 0.007 CBA G9M 29
G9M CBB CBB C 0 1 N N N N N N 39.145 72.254 -3.440 4.969 -0.095 0.216 CBB G9M 30
G9M HA HA H 0 1 N N N N N N 39.378 71.955 1.152 1.744 -3.166 0.765 HA G9M 31
G9M HAA HAA H 0 1 N N N N N N 41.018 71.376 0.695 1.653 -3.393 -0.998 HAA G9M 32
G9M HN13 HN13 H 0 0 N N N N N N 40.228 70.675 2.997 -0.794 -3.788 -0.004 HN13 G9M 33
G9M HN14 HN14 H 0 0 N N N N N N 39.042 64.853 6.002 -6.633 -1.017 0.574 HN14 G9M 34
G9M HAC HAC H 0 1 N N N N N N 42.166 68.687 10.426 -3.990 4.926 -0.637 HAC G9M 35
G9M HAD HAD H 0 1 N N N N N N 42.311 70.492 8.747 -1.770 3.893 -0.836 HAD G9M 36
G9M HAE HAE H 0 1 N N N N N N 38.743 67.459 2.074 -3.138 -4.108 0.469 HAE G9M 37
G9M HAF HAF H 0 1 N N N N N N 41.090 66.538 9.856 -5.967 3.552 -0.148 HAF G9M 38
G9M HAG HAG H 0 1 N N N N N N 41.383 70.153 6.481 -1.494 1.467 -0.550 HAG G9M 39
G9M HAH HAH H 0 1 N N N N N N 38.566 65.618 3.739 -5.376 -3.066 0.660 HAH G9M 40
G9M HAI HAI H 0 1 N N N N N N 38.713 73.879 -7.600 8.803 1.943 -0.826 HAI G9M 41
G9M HAIA HAIA H 0 0 N N N N N N 38.287 74.759 -6.123 8.927 1.078 0.735 HAIA G9M 42
G9M HAJ HAJ H 0 1 N N N N N N 36.234 73.541 -6.583 7.898 2.995 1.599 HAJ G9M 43
G9M HAJA HAJA H 0 0 N N N N N N 37.097 72.116 -7.165 7.221 3.461 0.004 HAJA G9M 44
G9M HAK HAK H 0 1 N N N N N N 39.944 70.243 -3.321 5.899 -1.521 -1.105 HAK G9M 45
G9M HAKA HAKA H 0 0 N N N N N N 41.154 71.505 -3.754 4.590 -0.573 -1.852 HAKA G9M 46
G9M HAL HAL H 0 1 N N N N N N 37.254 72.878 -2.587 3.223 1.003 -0.411 HAL G9M 47
G9M HALA HALA H 0 0 N N N N N N 37.524 71.094 -2.593 3.591 1.139 1.325 HALA G9M 48
G9M HAM HAM H 0 1 N N N N N N 40.110 73.590 -5.200 7.395 -0.463 0.013 HAM G9M 49
G9M HAMA HAMA H 0 0 N N N N N N 40.039 72.312 -6.446 7.300 0.379 -1.560 HAMA G9M 50
G9M HAN HAN H 0 1 N N N N N N 36.598 71.532 -4.854 5.263 2.617 1.127 HAN G9M 51
G9M HANA HANA H 0 0 N N N N N N 36.933 73.180 -4.277 6.194 1.329 1.958 HANA G9M 52
G9M HAO HAO H 0 1 N N N N N N 41.101 72.383 -1.443 4.244 -2.726 0.285 HAO G9M 53
G9M HAOA HAOA H 0 0 N N N N N N 41.483 70.627 -1.424 3.861 -2.903 -1.444 HAOA G9M 54
G9M HAP HAP H 0 1 N N N N N N 37.650 71.953 -0.289 1.605 -0.303 0.933 HAP G9M 55
G9M HAPA HAPA H 0 0 N N N N N N 38.900 73.146 -0.775 2.943 -1.227 1.655 HAPA G9M 56
G9M HBB HBB H 0 1 N N N N N N 39.526 73.282 -3.353 5.328 -0.602 1.112 HBB G9M 57
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G9M O C DOUB N N 1
G9M CA C SING N N 2
G9M C N13 SING N N 3
G9M N12 CA SING N N 4
G9M CA HA SING N N 5
G9M CA HAA SING N N 6
G9M CAM N11 SING N N 7
G9M CAN N11 SING N N 8
G9M N11 CBB SING N N 9
G9M CAO N12 SING N N 10
G9M CAP N12 SING N N 11
G9M N13 CAV SING N N 12
G9M N13 HN13 SING N N 13
G9M CAX N14 SING N N 14
G9M N14 CAW SING N N 15
G9M N14 HN14 SING N N 16
G9M CAV N15 DOUB Y N 17
G9M N15 CBA SING Y N 18
G9M CAW OAB DOUB N N 19
G9M CAD CAC DOUB Y N 20
G9M CAF CAC SING Y N 21
G9M CAC HAC SING N N 22
G9M CAG CAD SING Y N 23
G9M CAD HAD SING N N 24
G9M CAE CAV SING Y N 25
G9M CAE CAH DOUB Y N 26
G9M CAE HAE SING N N 27
G9M CAY CAF DOUB Y N 28
G9M CAF HAF SING N N 29
G9M CAZ CAG DOUB Y N 30
G9M CAG HAG SING N N 31
G9M CAH CAX SING Y N 32
G9M CAH HAH SING N N 33
G9M CAI CAJ SING N N 34
G9M CAI CAM SING N N 35
G9M CAI HAI SING N N 36
G9M CAI HAIA SING N N 37
G9M CAJ CAN SING N N 38
G9M CAJ HAJ SING N N 39
G9M CAJ HAJA SING N N 40
G9M CBB CAK SING N N 41
G9M CAK CAO SING N N 42
G9M CAK HAK SING N N 43
G9M CAK HAKA SING N N 44
G9M CBB CAL SING N N 45
G9M CAL CAP SING N N 46
G9M CAL HAL SING N N 47
G9M CAL HALA SING N N 48
G9M CAM HAM SING N N 49
G9M CAM HAMA SING N N 50
G9M CAN HAN SING N N 51
G9M CAN HANA SING N N 52
G9M CAO HAO SING N N 53
G9M CAO HAOA SING N N 54
G9M CAP HAP SING N N 55
G9M CAP HAPA SING N N 56
G9M CAW CAY SING N N 57
G9M CAX CBA DOUB Y N 58
G9M CAZ CAY SING Y N 59
G9M CBA CAZ SING Y N 60
G9M CBB HBB SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G9M SMILES_CANONICAL CACTVS 3.352 O=C(CN1CCC(CC1)N2CCCC2)Nc3ccc4NC(=O)c5ccccc5c4n3
G9M SMILES CACTVS 3.352 O=C(CN1CCC(CC1)N2CCCC2)Nc3ccc4NC(=O)c5ccccc5c4n3
G9M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1ccc2c(c1)-c3c(ccc(n3)NC(=O)CN4CCC(CC4)N5CCCC5)NC2=O
G9M SMILES "OpenEye OEToolkits" 1.7.0 c1ccc2c(c1)-c3c(ccc(n3)NC(=O)CN4CCC(CC4)N5CCCC5)NC2=O
G9M InChI InChI 1.03 InChI=1S/C23H27N5O2/c29-21(15-27-13-9-16(10-14-27)28-11-3-4-12-28)25-20-8-7-19-22(26-20)17-5-1-2-6-18(17)23(30)24-19/h1-2,5-8,16H,3-4,9-15H2,(H,24,30)(H,25,26,29)
G9M InChIKey InChI 1.03 XEKQXWYAIADGIV-UHFFFAOYSA-N
#
_pdbx_chem_comp_identifier.comp_id G9M
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.6.1
_pdbx_chem_comp_identifier.identifier
N-(6-oxo-5H-benzo[h][1,5]naphthyridin-2-yl)-2-(4-pyrrolidin-1-ylpiperidin-1-yl)ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G9M 'Create component' 2009-11-03 RCSB
G9M 'Modify aromatic_flag' 2011-06-04 RCSB
G9M 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G9M C C 11.880 0.480 1
G9M O O 11.874 -1.020 2
G9M CA C 10.584 1.235 3
G9M N11 N 5.376 -1.745 4
G9M N12 N 9.282 0.490 5
G9M N13 N 13.182 1.225 6
G9M N14 N 18.477 -1.811 7
G9M N15 N 15.837 1.241 8
G9M OAB O 21.075 -1.811 9
G9M CAC C 21.153 2.761 10
G9M CAD C 19.800 3.542 11
G9M CAE C 14.478 -1.093 12
G9M CAF C 21.141 1.199 13
G9M CAG C 18.453 2.751 14
G9M CAH C 15.837 -1.863 15
G9M CAI C 3.000 -2.240 16
G9M CAJ C 3.745 -3.542 17
G9M CAK C 6.684 0.500 18
G9M CAL C 7.974 -1.755 19
G9M CAM C 4.008 -1.130 20
G9M CAN C 5.213 -3.236 21
G9M CAO C 7.986 1.245 22
G9M CAP C 9.276 -1.010 23
G9M CAV C 14.478 0.470 24
G9M CAW C 19.776 -1.061 25
G9M CAX C 17.178 -1.061 26
G9M CAY C 19.776 0.439 27
G9M CAZ C 18.477 1.189 28
G9M CBA C 17.178 0.439 29
G9M CBB C 6.678 -1.000 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G9M O C DOUBLE NONE 1
G9M CA C SINGLE NONE 2
G9M C N13 SINGLE NONE 3
G9M N12 CA SINGLE NONE 4
G9M CAM N11 SINGLE NONE 5
G9M CAN N11 SINGLE NONE 6
G9M N11 CBB SINGLE NONE 7
G9M CAO N12 SINGLE NONE 8
G9M CAP N12 SINGLE NONE 9
G9M N13 CAV SINGLE NONE 10
G9M CAX N14 SINGLE NONE 11
G9M N14 CAW SINGLE NONE 12
G9M CAV N15 SINGLE NONE 13
G9M N15 CBA DOUBLE NONE 14
G9M CAW OAB DOUBLE NONE 15
G9M CAD CAC DOUBLE NONE 16
G9M CAF CAC SINGLE NONE 17
G9M CAG CAD SINGLE NONE 18
G9M CAE CAV DOUBLE NONE 19
G9M CAE CAH SINGLE NONE 20
G9M CAY CAF DOUBLE NONE 21
G9M CAZ CAG DOUBLE NONE 22
G9M CAH CAX DOUBLE NONE 23
G9M CAI CAJ SINGLE NONE 24
G9M CAI CAM SINGLE NONE 25
G9M CAJ CAN SINGLE NONE 26
G9M CBB CAK SINGLE NONE 27
G9M CAK CAO SINGLE NONE 28
G9M CBB CAL SINGLE NONE 29
G9M CAL CAP SINGLE NONE 30
G9M CAW CAY SINGLE NONE 31
G9M CAX CBA SINGLE NONE 32
G9M CAZ CAY SINGLE NONE 33
G9M CBA CAZ SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G9M MurckoScaffold S1 scaffold 'O=C(CN1CCC(N2CCCC2)CC1)Nc1ccc2[nH]c(=O)c3ccccc3c2n1' InChI=1S/C23H27N5O2/c29-21(15-27-13-9-16(10-14-27)28-11-3-4-12-28)25-20-8-7-19-22(26-20)17-5-1-2-6-18(17)23(30)24-19/h1-2,5-8,16H,3-4,9-15H2,(H,24,30)(H,25,26,29) XEKQXWYAIADGIV-UHFFFAOYSA-N
G9M amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
G9M isoquinoline F2 fragment c1ccc2cnccc2c1 InChI=1S/C9H7N/c1-2-4-9-7-10-6-5-8(9)3-1/h1-7H AWJUIBRHMBBTKR-UHFFFAOYSA-N
G9M naphtyridine F3 fragment c1cnc2cccnc2c1 InChI=1S/C8H6N2/c1-3-7-8(9-5-1)4-2-6-10-7/h1-6H VMLKTERJLVWEJJ-UHFFFAOYSA-N
G9M peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
G9M phenyl F5 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
G9M pyridine F6 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G9M C S1 1
G9M O S1 1
G9M CA S1 1
G9M N11 S1 1
G9M N12 S1 1
G9M N13 S1 1
G9M N14 S1 1
G9M N15 S1 1
G9M OAB S1 1
G9M CAC S1 1
G9M CAD S1 1
G9M CAE S1 1
G9M CAF S1 1
G9M CAG S1 1
G9M CAH S1 1
G9M CAI S1 1
G9M CAJ S1 1
G9M CAK S1 1
G9M CAL S1 1
G9M CAM S1 1
G9M CAN S1 1
G9M CAO S1 1
G9M CAP S1 1
G9M CAV S1 1
G9M CAW S1 1
G9M CAX S1 1
G9M CAY S1 1
G9M CAZ S1 1
G9M CBA S1 1
G9M CBB S1 1
G9M N13 F1 1
G9M C F1 1
G9M O F1 1
G9M CA F1 1
G9M CAD F2 1
G9M CAG F2 1
G9M CAZ F2 1
G9M CAY F2 1
G9M CAF F2 1
G9M CAC F2 1
G9M CAW F2 1
G9M N14 F2 1
G9M CAX F2 1
G9M CBA F2 1
G9M CAE F3 1
G9M CAV F3 1
G9M N15 F3 1
G9M CBA F3 1
G9M CAX F3 1
G9M CAH F3 1
G9M N14 F3 1
G9M CAW F3 1
G9M CAY F3 1
G9M CAZ F3 1
G9M O F4 1
G9M C F4 1
G9M CA F4 1
G9M N12 F4 1
G9M CAC F5 1
G9M CAD F5 1
G9M CAG F5 1
G9M CAZ F5 1
G9M CAY F5 1
G9M CAF F5 1
G9M CAV F6 1
G9M CAE F6 1
G9M CAH F6 1
G9M CAX F6 1
G9M CBA F6 1
G9M N15 F6 1
G9M CAW F6 2
G9M CAY F6 2
G9M CAZ F6 2
G9M CBA F6 2
G9M CAX F6 2
G9M N14 F6 2
#
_pdbe_chem_comp_rdkit_properties.comp_id G9M
_pdbe_chem_comp_rdkit_properties.exactmw 405.216
_pdbe_chem_comp_rdkit_properties.amw 405.502
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 57
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.435
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 212.680
_pdbe_chem_comp_rdkit_properties.tpsa 81.330
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.237
_pdbe_chem_comp_rdkit_properties.CrippenMR 113.640
_pdbe_chem_comp_rdkit_properties.chi0v 14.553
_pdbe_chem_comp_rdkit_properties.chi1v 8.092
_pdbe_chem_comp_rdkit_properties.chi2v 3.695
_pdbe_chem_comp_rdkit_properties.chi3v 3.695
_pdbe_chem_comp_rdkit_properties.chi4v 2.446
_pdbe_chem_comp_rdkit_properties.chi0n 41.553
_pdbe_chem_comp_rdkit_properties.chi1n 21.486
_pdbe_chem_comp_rdkit_properties.chi2n 3.695
_pdbe_chem_comp_rdkit_properties.chi3n 3.695
_pdbe_chem_comp_rdkit_properties.chi4n 2.446
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.770
_pdbe_chem_comp_rdkit_properties.kappa1 5.525
_pdbe_chem_comp_rdkit_properties.kappa2 8.162
_pdbe_chem_comp_rdkit_properties.kappa3 3.825
_pdbe_chem_comp_rdkit_properties.Phi 1.503
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
G9M UniChem ZINC ZINC000003815860
G9M UniChem SureChEMBL SCHEMBL12750448
G9M UniChem 'PubChem TPHARMA' 24904415
G9M UniChem PubChem 10928352
G9M UniChem BindingDb 50130572
G9M UniChem Nikkaji J2.147.178J
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
G9M C -0.781 -1.380 0.379 ETKDGv3 1
G9M O -1.556 -1.446 -0.613 ETKDGv3 2
G9M CA 0.585 -1.991 0.276 ETKDGv3 3
G9M N11 4.893 -0.014 -0.541 ETKDGv3 4
G9M N12 1.454 -1.169 -0.595 ETKDGv3 5
G9M N13 -1.180 -0.702 1.584 ETKDGv3 6
G9M N14 -6.207 1.863 2.257 ETKDGv3 7
G9M N15 -3.433 -0.052 0.709 ETKDGv3 8
G9M OAB -8.286 2.441 1.393 ETKDGv3 9
G9M CAC -7.494 0.496 -2.354 ETKDGv3 10
G9M CAD -6.317 -0.111 -2.525 ETKDGv3 11
G9M CAE -2.732 0.566 2.920 ETKDGv3 12
G9M CAF -7.799 1.174 -1.079 ETKDGv3 13
G9M CAG -5.316 -0.107 -1.440 ETKDGv3 14
G9M CAH -4.036 1.232 3.096 ETKDGv3 15
G9M CAI 6.597 1.655 -0.885 ETKDGv3 16
G9M CAJ 7.009 0.390 -1.612 ETKDGv3 17
G9M CAK 3.693 -2.168 -0.074 ETKDGv3 18
G9M CAL 2.985 -0.083 1.087 ETKDGv3 19
G9M CAM 5.413 1.257 -0.018 ETKDGv3 20
G9M CAN 6.069 -0.690 -1.105 ETKDGv3 21
G9M CAO 2.602 -1.932 -1.132 ETKDGv3 22
G9M CAP 1.881 0.106 0.029 ETKDGv3 23
G9M CAV -2.451 -0.052 1.762 ETKDGv3 24
G9M CAW -7.182 1.861 1.207 ETKDGv3 25
G9M CAX -4.935 1.219 2.101 ETKDGv3 26
G9M CAY -6.895 1.186 -0.080 ETKDGv3 27
G9M CAZ -5.581 0.508 -0.271 ETKDGv3 28
G9M CBA -4.595 0.528 0.834 ETKDGv3 29
G9M CBB 4.203 -0.829 0.500 ETKDGv3 30
G9M HA 1.026 -2.128 1.285 ETKDGv3 31
G9M HAA 0.455 -3.008 -0.155 ETKDGv3 32
G9M HN13 -0.493 -0.672 2.371 ETKDGv3 33
G9M HN14 -6.437 2.348 3.154 ETKDGv3 34
G9M HAC -8.228 0.492 -3.150 ETKDGv3 35
G9M HAD -6.094 -0.609 -3.460 ETKDGv3 36
G9M HAE -2.013 0.584 3.730 ETKDGv3 37
G9M HAF -8.762 1.658 -0.968 ETKDGv3 38
G9M HAG -4.371 -0.608 -1.610 ETKDGv3 39
G9M HAH -4.255 1.729 4.032 ETKDGv3 40
G9M HAI 7.429 2.047 -0.260 ETKDGv3 41
G9M HAIA 6.293 2.435 -1.617 ETKDGv3 42
G9M HAJ 6.883 0.523 -2.709 ETKDGv3 43
G9M HAJA 8.068 0.128 -1.396 ETKDGv3 44
G9M HAK 4.521 -2.757 -0.519 ETKDGv3 45
G9M HAKA 3.283 -2.792 0.749 ETKDGv3 46
G9M HAL 3.278 0.907 1.494 ETKDGv3 47
G9M HALA 2.586 -0.652 1.953 ETKDGv3 48
G9M HAM 5.756 1.151 1.037 ETKDGv3 49
G9M HAMA 4.627 2.042 -0.071 ETKDGv3 50
G9M HAN 6.597 -1.297 -0.333 ETKDGv3 51
G9M HANA 5.766 -1.350 -1.946 ETKDGv3 52
G9M HAO 2.265 -2.909 -1.541 ETKDGv3 53
G9M HAOA 3.036 -1.375 -1.991 ETKDGv3 54
G9M HAP 2.254 0.786 -0.766 ETKDGv3 55
G9M HAPA 1.016 0.625 0.493 ETKDGv3 56
G9M HBB 4.907 -1.054 1.334 ETKDGv3 57
#