Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : G40    

Bonds between two atoms of the molecule

Total Number of Bonds: 105


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.51 N N
2 C1 C15 C C sing 1.53 N N
3 C1 O22 C O sing 1.43 N N
4 C1 C23 C C sing 1.53 N N
5 C2 O3 C O doub 1.21 N N
6 C2 N4 C N sing 1.35 N N
7 N4 C5 N C sing 1.46 N N
8 C5 C6 C C sing 1.53 N N
9 C5 C11 C C sing 1.51 N N
10 C6 C7 C C sing 1.53 N N
11 C6 C8 C C sing 1.53 N N
12 C6 C13 C C sing 1.53 N N
13 C9 N10 C N sing 1.47 N N
14 N10 C11 N C sing 1.35 N N
15 C11 O12 C O doub 1.21 N N
16 C15 C16 C C sing 1.51 N N
17 C16 C17 C C sing 1.38 N Y
18 C16 C21 C C doub 1.38 N Y
19 C17 C18 C C doub 1.38 N Y
20 C18 C19 C C sing 1.38 N Y
21 C19 C20 C C doub 1.38 N Y
22 C20 C21 C C sing 1.38 N Y
23 C23 C24 C C sing 1.53 N N
24 C24 C25 C C sing 1.53 N N
25 C25 N26 C N sing 1.47 N N
26 N26 C27 N C sing 1.47 N N
27 N26 N43 N N sing 1.37 N N
28 C27 C28 C C sing 1.51 N N
29 C28 C29 C C sing 1.38 N Y
30 C28 C33 C C doub 1.38 N Y
31 C29 C30 C C doub 1.38 N Y
32 C30 C31 C C sing 1.39 N Y
33 C31 C32 C C doub 1.39 N Y
34 C31 C56 C C sing 1.48 N Y
35 C32 C33 C C sing 1.38 N Y
36 C35 C41 C C sing 1.53 N N
37 C35 C45 C C sing 1.53 N N
38 C35 C46 C C sing 1.53 N N
39 C35 C47 C C sing 1.53 N N
40 C36 O37 C O sing 1.45 N N
41 O37 C38 O C sing 1.35 N N
42 C38 O39 C O doub 1.22 N N
43 C38 N40 C N sing 1.35 N N
44 N40 C41 N C sing 1.46 N N
45 C41 C42 C C sing 1.51 N N
46 C42 N43 C N sing 1.35 N N
47 C42 O44 C O doub 1.21 N N
48 S54 C55 S C sing 1.76 N Y
49 S54 C58 S C sing 1.76 N Y
50 C55 C56 C C doub 1.35 N Y
51 C56 C57 C C sing 1.39 N Y
52 C57 C58 C C doub 1.33 N Y
53 C15 H151 C H sing 1.09 N N
54 C15 H152 C H sing 1.09 N N
55 O22 H22 O H sing 0.97 N N
56 C23 H231 C H sing 1.09 N N
57 C23 H232 C H sing 1.09 N N
58 N4 H4 N H sing 0.97 N N
59 C5 H5 C H sing 1.09 N N
60 C7 H71C C H sing 1.09 N N
61 C7 H72C C H sing 1.09 N N
62 C7 H73C C H sing 1.09 N N
63 C8 H81C C H sing 1.09 N N
64 C8 H82C C H sing 1.09 N N
65 C8 H83C C H sing 1.09 N N
66 C13 H131 C H sing 1.09 N N
67 C13 H132 C H sing 1.09 N N
68 C13 H133 C H sing 1.09 N N
69 C9 H91C C H sing 1.09 N N
70 C9 H92C C H sing 1.09 N N
71 C9 H93C C H sing 1.09 N N
72 N10 H10 N H sing 0.97 N N
73 C17 H17 C H sing 1.08 N N
74 C21 H21 C H sing 1.08 N N
75 C18 H18 C H sing 1.08 N N
76 C19 H19 C H sing 1.08 N N
77 C20 H20 C H sing 1.08 N N
78 C24 H241 C H sing 1.09 N N
79 C24 H242 C H sing 1.09 N N
80 C25 H251 C H sing 1.09 N N
81 C25 H252 C H sing 1.09 N N
82 C27 H271 C H sing 1.09 N N
83 C27 H272 C H sing 1.09 N N
84 N43 H43 N H sing 0.97 N N
85 C29 H29 C H sing 1.08 N N
86 C33 H33 C H sing 1.08 N N
87 C30 H30 C H sing 1.08 N N
88 C32 H32 C H sing 1.08 N N
89 C41 H41 C H sing 1.09 N N
90 C45 H451 C H sing 1.09 N N
91 C45 H452 C H sing 1.09 N N
92 C45 H453 C H sing 1.09 N N
93 C46 H461 C H sing 1.09 N N
94 C46 H462 C H sing 1.09 N N
95 C46 H463 C H sing 1.09 N N
96 C47 H471 C H sing 1.09 N N
97 C47 H472 C H sing 1.09 N N
98 C47 H473 C H sing 1.09 N N
99 C36 H361 C H sing 1.09 N N
100 C36 H362 C H sing 1.09 N N
101 C36 H363 C H sing 1.09 N N
102 N40 H40 N H sing 0.97 N N
103 C55 H55 C H sing 1.08 N N
104 C58 H58 C H sing 1.08 N N
105 C57 H57 C H sing 1.08 N N