data_G40
#
_chem_comp.id G40
_chem_comp.name
"METHYL N-[(2S)-1-[2-[(4R)-5-[[(2S)-3,3-DIMETHYL-1-METHYLAMINO-1-OXO-BUTAN-2-YL]AMINO]-4-HYDROXY-5-OXO-4-(PHENYLMETHYL)PENTYL]-2-[(4-THIOPHEN-3-YLPHENYL)METHYL]HYDRAZINYL]-3,3-DIMETHYL-1-OXO-BUTAN-2-YL]CARBAMATE"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C38 H53 N5 O6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-11-17
_chem_comp.pdbx_modified_date 2011-12-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 707.922
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G40
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2XYF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G40 C1 C1 C 0 1 N N R N N N 11.958 24.270 4.581 -3.034 0.929 0.104 C1 G40 1
G40 C2 C2 C 0 1 N N N N N N 10.774 24.238 5.601 -4.440 1.301 -0.292 C2 G40 2
G40 O3 O3 O 0 1 N N N N N N 10.490 23.232 6.255 -4.681 2.419 -0.696 O3 G40 3
G40 N4 N4 N 0 1 N N N N N N 10.073 25.390 5.672 -5.430 0.391 -0.199 N4 G40 4
G40 C5 C5 C 0 1 N N S N N N 8.820 25.753 6.512 -6.796 0.752 -0.583 C5 G40 5
G40 C6 C6 C 0 1 N N N N N N 9.031 26.313 8.055 -6.967 0.566 -2.092 C6 G40 6
G40 C7 C7 C 0 1 N N N N N N 7.668 26.627 8.767 -6.763 -0.907 -2.451 C7 G40 7
G40 C8 C8 C 0 1 N N N N N N 9.838 27.618 8.101 -8.376 1.001 -2.503 C8 G40 8
G40 C9 C9 C 0 1 N N N N N N 5.706 26.864 4.711 -10.000 -0.578 1.033 C9 G40 9
G40 N10 N10 N 0 1 N N N N N N 6.788 26.239 5.479 -9.070 0.228 0.238 N10 G40 10
G40 C11 C11 C 0 1 N N N N N N 8.045 26.737 5.661 -7.774 -0.132 0.146 C11 G40 11
G40 O12 O12 O 0 1 N N N N N N 8.453 27.802 5.194 -7.396 -1.168 0.650 O12 G40 12
G40 C13 C13 C 0 1 N N N N N N 9.802 25.311 8.922 -5.935 1.419 -2.832 C13 G40 13
G40 C15 C15 C 0 1 N N N N N N 11.428 23.603 3.236 -2.863 1.115 1.612 C15 G40 14
G40 C16 C16 C 0 1 Y N N N N N 10.048 24.143 2.725 -3.887 0.282 2.341 C16 G40 15
G40 C17 C17 C 0 1 Y N N N N N 8.870 23.274 2.849 -3.614 -1.038 2.645 C17 G40 16
G40 C18 C18 C 0 1 Y N N N N N 7.572 23.737 2.402 -4.553 -1.802 3.313 C18 G40 17
G40 C19 C19 C 0 1 Y N N N N N 7.430 25.067 1.827 -5.765 -1.245 3.676 C19 G40 18
G40 C20 C20 C 0 1 Y N N N N N 8.588 25.933 1.699 -6.037 0.076 3.373 C20 G40 19
G40 C21 C21 C 0 1 Y N N N N N 9.890 25.470 2.147 -5.097 0.840 2.709 C21 G40 20
G40 O22 O22 O 0 1 N N N N N N 12.334 25.613 4.270 -2.789 -0.437 -0.239 O22 G40 21
G40 C23 C23 C 0 1 N N N N N N 13.313 23.636 4.997 -2.041 1.827 -0.637 C23 G40 22
G40 C24 C24 C 0 1 N N N N N N 13.859 24.042 6.394 -0.614 1.452 -0.232 C24 G40 23
G40 C25 C25 C 0 1 N N N N N N 15.325 23.692 6.587 0.373 2.415 -0.893 C25 G40 24
G40 N26 N26 N 0 1 N N N N N N 15.457 22.373 7.116 1.747 1.985 -0.600 N26 G40 25
G40 C27 C27 C 0 1 N N N N N N 16.385 22.378 8.236 2.721 2.980 -1.070 C27 G40 26
G40 C28 C28 C 0 1 Y N N N N N 16.595 21.042 8.950 4.106 2.565 -0.645 C28 G40 27
G40 C29 C29 C 0 1 Y N N N N N 15.427 20.283 9.363 4.871 1.764 -1.474 C29 G40 28
G40 C30 C30 C 0 1 Y N N N N N 15.593 19.025 10.033 6.140 1.382 -1.090 C30 G40 29
G40 C31 C31 C 0 1 Y N N N N N 16.930 18.507 10.302 6.651 1.804 0.135 C31 G40 30
G40 C32 C32 C 0 1 Y N N N N N 18.111 19.265 9.887 5.877 2.611 0.967 C32 G40 31
G40 C33 C33 C 0 1 Y N N N N N 17.937 20.546 9.202 4.611 2.992 0.570 C33 G40 32
G40 C35 C35 C 0 1 N N N N N N 15.321 18.910 3.406 1.066 -2.283 -1.233 C35 G40 33
G40 C36 C36 C 0 1 N N N N N N 19.912 17.681 6.760 5.273 -5.472 -0.086 C36 G40 34
G40 O37 O37 O 0 1 N N N N N N 18.523 18.005 6.608 4.524 -4.355 0.460 O37 G40 35
G40 C38 C38 C 0 1 N N N N N N 18.138 18.959 5.636 3.865 -3.573 -0.417 C38 G40 36
G40 O39 O39 O 0 1 N N N N N N 18.923 19.707 5.059 3.916 -3.818 -1.606 O39 G40 37
G40 N40 N40 N 0 1 N N N N N N 16.817 18.894 5.474 3.151 -2.519 0.024 N40 G40 38
G40 C41 C41 C 0 1 N N S N N N 16.037 19.740 4.537 2.435 -1.669 -0.930 C41 G40 39
G40 C42 C42 C 0 1 N N N N N N 15.297 20.544 5.609 2.249 -0.296 -0.338 C42 G40 40
G40 N43 N43 N 0 1 N N N N N N 15.971 21.577 6.155 2.001 0.757 -1.142 N43 G40 41
G40 O44 O44 O 0 1 N N N N N N 14.134 20.240 5.948 2.322 -0.138 0.863 O44 G40 42
G40 C45 C45 C 0 1 N N N N N N 16.392 18.254 2.525 0.205 -2.257 0.031 C45 G40 43
G40 C46 C46 C 0 1 N N N N N N 14.510 19.777 2.466 0.379 -1.476 -2.336 C46 G40 44
G40 C47 C47 C 0 1 N N N N N N 14.477 17.772 3.970 1.248 -3.729 -1.698 C47 G40 45
G40 S54 S54 S 0 1 Y N N N N N 16.344 14.834 12.085 10.338 0.354 0.620 S54 G40 46
G40 C55 C55 C 0 1 Y N N N N N 15.923 16.306 11.187 8.808 0.619 -0.206 C55 G40 47
G40 C56 C56 C 0 1 Y N N N N N 17.029 17.212 11.010 8.015 1.396 0.554 C56 G40 48
G40 C57 C57 C 0 1 Y N N N N N 18.233 16.690 11.621 8.580 1.786 1.767 C57 G40 49
G40 C58 C58 C 0 1 Y N N N N N 18.020 15.429 12.232 9.812 1.331 1.983 C58 G40 50
G40 H151 H151 H 0 0 N N N N N N 12.174 23.798 2.451 -1.862 0.799 1.906 H151 G40 51
G40 H152 H152 H 0 0 N N N N N N 11.280 22.536 3.457 -3.002 2.165 1.867 H152 G40 52
G40 H22 H22 H 0 1 N N N N N N 12.417 26.113 5.073 -2.880 -0.628 -1.183 H22 G40 53
G40 H231 H231 H 0 0 N N N N N N 13.175 22.545 5.004 -2.161 1.692 -1.712 H231 G40 54
G40 H232 H232 H 0 0 N N N N N N 14.051 24.004 4.269 -2.231 2.868 -0.378 H232 G40 55
G40 H4 H4 H 0 1 N N N N N N 10.416 26.127 5.090 -5.237 -0.504 0.124 H4 G40 56
G40 H5 H5 H 0 1 N N N N N N 8.292 24.812 6.725 -6.984 1.794 -0.322 H5 G40 57
G40 H71C H71C H 0 0 N N N N N N 7.829 26.700 9.853 -7.499 -1.515 -1.924 H71C G40 58
G40 H72C H72C H 0 0 N N N N N N 7.269 27.580 8.390 -6.885 -1.039 -3.526 H72C G40 59
G40 H73C H73C H 0 0 N N N N N N 6.950 25.820 8.557 -5.760 -1.216 -2.158 H73C G40 60
G40 H81C H81C H 0 0 N N N N N N 10.031 27.894 9.148 -8.518 2.053 -2.257 H81C G40 61
G40 H82C H82C H 0 0 N N N N N N 10.795 27.476 7.577 -8.501 0.859 -3.577 H82C G40 62
G40 H83C H83C H 0 0 N N N N N N 9.266 28.420 7.611 -9.112 0.399 -1.969 H83C G40 63
G40 H131 H131 H 0 0 N N N N N N 9.987 24.393 8.346 -4.931 1.110 -2.539 H131 G40 64
G40 H132 H132 H 0 0 N N N N N N 10.763 25.752 9.226 -6.056 1.287 -3.907 H132 G40 65
G40 H133 H133 H 0 0 N N N N N N 9.210 25.069 9.817 -6.080 2.469 -2.576 H133 G40 66
G40 H91C H91C H 0 0 N N N N N N 4.835 27.020 5.364 -10.036 -1.591 0.633 H91C G40 67
G40 H92C H92C H 0 0 N N N N N N 6.048 27.833 4.318 -9.660 -0.608 2.069 H92C G40 68
G40 H93C H93C H 0 0 N N N N N N 5.424 26.207 3.875 -10.994 -0.134 0.989 H93C G40 69
G40 H10 H10 H 0 1 N N N N N N 6.584 25.361 5.912 -9.387 1.021 -0.222 H10 G40 70
G40 H17 H17 H 0 1 N N N N N N 8.972 22.287 3.275 -2.667 -1.474 2.361 H17 G40 71
G40 H21 H21 H 0 1 N N N N N N 10.750 26.117 2.050 -5.308 1.873 2.475 H21 G40 72
G40 H18 H18 H 0 1 N N N N N N 6.709 23.095 2.495 -4.340 -2.834 3.550 H18 G40 73
G40 H19 H19 H 0 1 N N N N N N 6.461 25.410 1.495 -6.499 -1.842 4.198 H19 G40 74
G40 H20 H20 H 0 1 N N N N N N 8.482 26.919 1.272 -6.984 0.511 3.657 H20 G40 75
G40 H241 H241 H 0 0 N N N N N N 13.747 25.131 6.505 -0.515 1.517 0.852 H241 G40 76
G40 H242 H242 H 0 0 N N N N N N 13.285 23.483 7.147 -0.400 0.433 -0.555 H242 G40 77
G40 H251 H251 H 0 0 N N N N N N 15.839 23.745 5.616 0.214 2.415 -1.972 H251 G40 78
G40 H252 H252 H 0 0 N N N N N N 15.773 24.406 7.294 0.216 3.421 -0.503 H252 G40 79
G40 H271 H271 H 0 0 N N N N N N 17.363 22.697 7.847 2.679 3.045 -2.157 H271 G40 80
G40 H272 H272 H 0 0 N N N N N N 15.941 23.049 8.986 2.484 3.952 -0.638 H272 G40 81
G40 H43 H43 H 0 1 N N N N N N 16.899 21.762 5.831 2.004 0.643 -2.105 H43 G40 82
G40 H29 H29 H 0 1 N N N N N N 14.436 20.665 9.166 4.473 1.437 -2.424 H29 G40 83
G40 H33 H33 H 0 1 N N N N N N 18.798 21.117 8.887 4.011 3.621 1.212 H33 G40 84
G40 H30 H30 H 0 1 N N N N N N 14.725 18.460 10.339 6.736 0.756 -1.738 H30 G40 85
G40 H32 H32 H 0 1 N N N N N N 19.101 18.882 10.084 6.268 2.941 1.918 H32 G40 86
G40 H41 H41 H 0 1 N N N N N N 16.522 20.413 3.815 3.011 -1.592 -1.852 H41 G40 87
G40 H451 H451 H 0 0 N N N N N N 15.990 18.097 1.513 0.075 -1.227 0.361 H451 G40 88
G40 H452 H452 H 0 0 N N N N N N 17.274 18.909 2.471 -0.770 -2.695 -0.186 H452 G40 89
G40 H453 H453 H 0 0 N N N N N N 16.680 17.285 2.959 0.695 -2.832 0.816 H453 G40 90
G40 H461 H461 H 0 0 N N N N N N 14.313 20.749 2.941 0.998 -1.485 -3.233 H461 G40 91
G40 H462 H462 H 0 0 N N N N N N 15.072 19.932 1.533 -0.591 -1.919 -2.560 H462 G40 92
G40 H463 H463 H 0 0 N N N N N N 13.555 19.280 2.241 0.239 -0.448 -2.001 H463 G40 93
G40 H471 H471 H 0 0 N N N N N N 14.274 17.038 3.177 1.738 -4.304 -0.912 H471 G40 94
G40 H472 H472 H 0 0 N N N N N N 15.022 17.283 4.791 0.273 -4.167 -1.914 H472 G40 95
G40 H473 H473 H 0 0 N N N N N N 13.526 18.174 4.349 1.862 -3.747 -2.598 H473 G40 96
G40 H361 H361 H 0 0 N N N N N N 20.380 17.598 5.768 4.595 -6.138 -0.621 H361 G40 97
G40 H362 H362 H 0 0 N N N N N N 20.412 18.473 7.336 6.032 -5.099 -0.774 H362 G40 98
G40 H363 H363 H 0 0 N N N N N N 20.009 16.723 7.292 5.754 -6.019 0.725 H363 G40 99
G40 H40 H40 H 0 1 N N N N N N 16.315 18.227 6.024 3.111 -2.324 0.973 H40 G40 100
G40 H55 H55 H 0 1 N N N N N N 14.931 16.504 10.809 8.546 0.220 -1.175 H55 G40 101
G40 H58 H58 H 0 1 N N N N N N 18.799 14.880 12.739 10.401 1.533 2.865 H58 G40 102
G40 H57 H57 H 0 1 N N N N N N 19.184 17.202 11.612 8.059 2.411 2.477 H57 G40 103
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G40 C1 C2 SING N N 1
G40 C1 C15 SING N N 2
G40 C1 O22 SING N N 3
G40 C1 C23 SING N N 4
G40 C2 O3 DOUB N N 5
G40 C2 N4 SING N N 6
G40 N4 C5 SING N N 7
G40 C5 C6 SING N N 8
G40 C5 C11 SING N N 9
G40 C6 C7 SING N N 10
G40 C6 C8 SING N N 11
G40 C6 C13 SING N N 12
G40 C9 N10 SING N N 13
G40 N10 C11 SING N N 14
G40 C11 O12 DOUB N N 15
G40 C15 C16 SING N N 16
G40 C16 C17 SING Y N 17
G40 C16 C21 DOUB Y N 18
G40 C17 C18 DOUB Y N 19
G40 C18 C19 SING Y N 20
G40 C19 C20 DOUB Y N 21
G40 C20 C21 SING Y N 22
G40 C23 C24 SING N N 23
G40 C24 C25 SING N N 24
G40 C25 N26 SING N N 25
G40 N26 C27 SING N N 26
G40 N26 N43 SING N N 27
G40 C27 C28 SING N N 28
G40 C28 C29 SING Y N 29
G40 C28 C33 DOUB Y N 30
G40 C29 C30 DOUB Y N 31
G40 C30 C31 SING Y N 32
G40 C31 C32 DOUB Y N 33
G40 C31 C56 SING Y N 34
G40 C32 C33 SING Y N 35
G40 C35 C41 SING N N 36
G40 C35 C45 SING N N 37
G40 C35 C46 SING N N 38
G40 C35 C47 SING N N 39
G40 C36 O37 SING N N 40
G40 O37 C38 SING N N 41
G40 C38 O39 DOUB N N 42
G40 C38 N40 SING N N 43
G40 N40 C41 SING N N 44
G40 C41 C42 SING N N 45
G40 C42 N43 SING N N 46
G40 C42 O44 DOUB N N 47
G40 S54 C55 SING Y N 48
G40 S54 C58 SING Y N 49
G40 C55 C56 DOUB Y N 50
G40 C56 C57 SING Y N 51
G40 C57 C58 DOUB Y N 52
G40 C15 H151 SING N N 53
G40 C15 H152 SING N N 54
G40 O22 H22 SING N N 55
G40 C23 H231 SING N N 56
G40 C23 H232 SING N N 57
G40 N4 H4 SING N N 58
G40 C5 H5 SING N N 59
G40 C7 H71C SING N N 60
G40 C7 H72C SING N N 61
G40 C7 H73C SING N N 62
G40 C8 H81C SING N N 63
G40 C8 H82C SING N N 64
G40 C8 H83C SING N N 65
G40 C13 H131 SING N N 66
G40 C13 H132 SING N N 67
G40 C13 H133 SING N N 68
G40 C9 H91C SING N N 69
G40 C9 H92C SING N N 70
G40 C9 H93C SING N N 71
G40 N10 H10 SING N N 72
G40 C17 H17 SING N N 73
G40 C21 H21 SING N N 74
G40 C18 H18 SING N N 75
G40 C19 H19 SING N N 76
G40 C20 H20 SING N N 77
G40 C24 H241 SING N N 78
G40 C24 H242 SING N N 79
G40 C25 H251 SING N N 80
G40 C25 H252 SING N N 81
G40 C27 H271 SING N N 82
G40 C27 H272 SING N N 83
G40 N43 H43 SING N N 84
G40 C29 H29 SING N N 85
G40 C33 H33 SING N N 86
G40 C30 H30 SING N N 87
G40 C32 H32 SING N N 88
G40 C41 H41 SING N N 89
G40 C45 H451 SING N N 90
G40 C45 H452 SING N N 91
G40 C45 H453 SING N N 92
G40 C46 H461 SING N N 93
G40 C46 H462 SING N N 94
G40 C46 H463 SING N N 95
G40 C47 H471 SING N N 96
G40 C47 H472 SING N N 97
G40 C47 H473 SING N N 98
G40 C36 H361 SING N N 99
G40 C36 H362 SING N N 100
G40 C36 H363 SING N N 101
G40 N40 H40 SING N N 102
G40 C55 H55 SING N N 103
G40 C58 H58 SING N N 104
G40 C57 H57 SING N N 105
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G40 SMILES_CANONICAL CACTVS 3.352 CNC(=O)[C@@H](NC(=O)[C@@](O)(CCCN(Cc1ccc(cc1)c2cscc2)NC(=O)[C@@H](NC(=O)OC)C(C)(C)C)Cc3ccccc3)C(C)(C)C
G40 SMILES CACTVS 3.352 CNC(=O)[CH](NC(=O)[C](O)(CCCN(Cc1ccc(cc1)c2cscc2)NC(=O)[CH](NC(=O)OC)C(C)(C)C)Cc3ccccc3)C(C)(C)C
G40 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 CC(C)(C)[C@@H](C(=O)NC)NC(=O)[C@@](CCC[N@](Cc1ccc(cc1)c2ccsc2)NC(=O)[C@H](C(C)(C)C)NC(=O)OC)(Cc3ccccc3)O
G40 SMILES "OpenEye OEToolkits" 1.6.1 CC(C)(C)C(C(=O)NC)NC(=O)C(CCCN(Cc1ccc(cc1)c2ccsc2)NC(=O)C(C(C)(C)C)NC(=O)OC)(Cc3ccccc3)O
G40 InChI InChI 1.03 InChI=1S/C38H53N5O6S/c1-36(2,3)30(32(44)39-7)40-34(46)38(48,23-26-13-10-9-11-14-26)20-12-21-43(42-33(45)31(37(4,5)6)41-35(47)49-8)24-27-15-17-28(18-16-27)29-19-22-50-25-29/h9-11,13-19,22,25,30-31,48H,12,20-21,23-24H2,1-8H3,(H,39,44)(H,40,46)(H,41,47)(H,42,45)/t30-,31-,38-/m1/s1
G40 InChIKey InChI 1.03 XNAIGGHDLWCRFU-SQQFMCCZSA-N
#
_pdbx_chem_comp_identifier.comp_id G40
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.6.1
_pdbx_chem_comp_identifier.identifier
"methyl N-[(2S)-1-[2-[(4R)-5-[[(2S)-3,3-dimethyl-1-methylamino-1-oxo-butan-2-yl]amino]-4-hydroxy-5-oxo-4-(phenylmethyl)pentyl]-2-[(4-thiophen-3-ylphenyl)methyl]hydrazinyl]-3,3-dimethyl-1-oxo-butan-2-yl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G40 'Create component' 2010-11-17 EBI
G40 'Modify aromatic_flag' 2011-06-04 RCSB
G40 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
G40 C1 C 9.495 -0.404 1
G40 C2 C 8.196 -1.154 2
G40 O3 O 6.897 -0.404 3
G40 N4 N 8.196 -2.654 4
G40 C5 C 6.897 -3.404 5
G40 C6 C 6.897 -4.904 6
G40 C7 C 6.897 -6.404 7
G40 C8 C 5.397 -4.904 8
G40 C9 C 3.000 -2.654 9
G40 N10 N 4.299 -3.404 10
G40 C11 C 5.598 -2.654 11
G40 O12 O 5.598 -1.154 12
G40 C13 C 8.397 -4.904 13
G40 C15 C 8.745 0.895 14
G40 C16 C 9.495 2.194 15
G40 C17 C 8.745 3.493 16
G40 C18 C 9.495 4.792 17
G40 C19 C 10.995 4.792 18
G40 C20 C 11.745 3.493 19
G40 C21 C 10.995 2.194 20
G40 O22 O 10.245 -1.703 21
G40 C23 C 10.794 0.346 22
G40 C24 C 12.093 -0.404 23
G40 C25 C 13.392 0.346 24
G40 N26 N 14.691 -0.404 25
G40 C27 C 15.990 0.346 26
G40 C28 C 15.990 1.846 27
G40 C29 C 17.290 2.596 28
G40 C30 C 17.290 4.096 29
G40 C31 C 15.990 4.846 30
G40 C32 C 14.691 4.096 31
G40 C33 C 14.691 2.596 32
G40 C35 C 12.093 -4.904 33
G40 C36 C 15.990 -8.654 34
G40 O37 O 15.990 -7.154 35
G40 C38 C 14.691 -6.404 36
G40 O39 O 13.392 -7.154 37
G40 N40 N 14.691 -4.904 38
G40 C41 C 13.392 -4.154 39
G40 C42 C 13.392 -2.654 40
G40 N43 N 14.691 -1.904 41
G40 O44 O 12.093 -1.904 42
G40 C45 C 10.794 -5.654 43
G40 C46 C 12.843 -6.203 44
G40 C47 C 11.343 -3.605 45
G40 S54 S 15.240 8.654 46
G40 C55 C 14.777 7.228 47
G40 C56 C 15.990 6.346 48
G40 C57 C 17.204 7.228 49
G40 C58 C 16.740 8.654 50
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
G40 C1 C2 SINGLE NONE 1
G40 C1 C15 SINGLE NONE 2
G40 C1 O22 SINGLE BEGINWEDGE 3
G40 C1 C23 SINGLE NONE 4
G40 C2 O3 DOUBLE NONE 5
G40 C2 N4 SINGLE NONE 6
G40 C5 N4 SINGLE BEGINWEDGE 7
G40 C5 C6 SINGLE NONE 8
G40 C5 C11 SINGLE NONE 9
G40 C6 C7 SINGLE NONE 10
G40 C6 C8 SINGLE NONE 11
G40 C6 C13 SINGLE NONE 12
G40 C9 N10 SINGLE NONE 13
G40 N10 C11 SINGLE NONE 14
G40 C11 O12 DOUBLE NONE 15
G40 C15 C16 SINGLE NONE 16
G40 C16 C17 DOUBLE NONE 17
G40 C16 C21 SINGLE NONE 18
G40 C17 C18 SINGLE NONE 19
G40 C18 C19 DOUBLE NONE 20
G40 C19 C20 SINGLE NONE 21
G40 C20 C21 DOUBLE NONE 22
G40 C23 C24 SINGLE NONE 23
G40 C24 C25 SINGLE NONE 24
G40 C25 N26 SINGLE NONE 25
G40 N26 C27 SINGLE NONE 26
G40 N26 N43 SINGLE NONE 27
G40 C27 C28 SINGLE NONE 28
G40 C28 C29 DOUBLE NONE 29
G40 C28 C33 SINGLE NONE 30
G40 C29 C30 SINGLE NONE 31
G40 C30 C31 DOUBLE NONE 32
G40 C31 C32 SINGLE NONE 33
G40 C31 C56 SINGLE NONE 34
G40 C32 C33 DOUBLE NONE 35
G40 C35 C41 SINGLE NONE 36
G40 C35 C45 SINGLE NONE 37
G40 C35 C46 SINGLE NONE 38
G40 C35 C47 SINGLE NONE 39
G40 C36 O37 SINGLE NONE 40
G40 O37 C38 SINGLE NONE 41
G40 C38 O39 DOUBLE NONE 42
G40 C38 N40 SINGLE NONE 43
G40 C41 N40 SINGLE BEGINWEDGE 44
G40 C41 C42 SINGLE NONE 45
G40 C42 N43 SINGLE NONE 46
G40 C42 O44 DOUBLE NONE 47
G40 S54 C55 SINGLE NONE 48
G40 S54 C58 SINGLE NONE 49
G40 C55 C56 DOUBLE NONE 50
G40 C56 C57 SINGLE NONE 51
G40 C57 C58 DOUBLE NONE 52
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
G40 MurckoScaffold S1 scaffold c1ccc(CCCCCNCc2ccc(-c3ccsc3)cc2)cc1 InChI=1S/C22H25NS/c1-3-7-19(8-4-1)9-5-2-6-15-23-17-20-10-12-21(13-11-20)22-14-16-24-18-22/h1,3-4,7-8,10-14,16,18,23H,2,5-6,9,15,17H2 DJZAJLUYDXLKEE-UHFFFAOYSA-N
G40 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
G40 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
G40 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
G40 thiophen F4 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
G40 Z419084966 F5 fragment NCC(O)Cc1ccccc1 InChI=1S/C9H13NO/c10-7-9(11)6-8-4-2-1-3-5-8/h1-5,9,11H,6-7,10H2 JIIXMZQZEAAIJX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
G40 C1 S1 1
G40 C15 S1 1
G40 C16 S1 1
G40 C17 S1 1
G40 C18 S1 1
G40 C19 S1 1
G40 C20 S1 1
G40 C21 S1 1
G40 C23 S1 1
G40 C24 S1 1
G40 C25 S1 1
G40 N26 S1 1
G40 C27 S1 1
G40 C28 S1 1
G40 C29 S1 1
G40 C30 S1 1
G40 C31 S1 1
G40 C32 S1 1
G40 C33 S1 1
G40 S54 S1 1
G40 C55 S1 1
G40 C56 S1 1
G40 C57 S1 1
G40 C58 S1 1
G40 N4 F1 1
G40 C2 F1 1
G40 O3 F1 1
G40 C1 F1 1
G40 N10 F1 2
G40 C11 F1 2
G40 O12 F1 2
G40 C5 F1 2
G40 N43 F1 3
G40 C42 F1 3
G40 O44 F1 3
G40 C41 F1 3
G40 O12 F2 1
G40 C11 F2 1
G40 C5 F2 1
G40 N4 F2 1
G40 O44 F2 2
G40 C42 F2 2
G40 C41 F2 2
G40 N40 F2 2
G40 C16 F3 1
G40 C17 F3 1
G40 C18 F3 1
G40 C19 F3 1
G40 C20 F3 1
G40 C21 F3 1
G40 C28 F3 2
G40 C29 F3 2
G40 C30 F3 2
G40 C31 F3 2
G40 C32 F3 2
G40 C33 F3 2
G40 C55 F4 1
G40 C56 F4 1
G40 C57 F4 1
G40 C58 F4 1
G40 S54 F4 1
G40 N4 F5 1
G40 C2 F5 1
G40 C1 F5 1
G40 O22 F5 1
G40 C15 F5 1
G40 C16 F5 1
G40 C17 F5 1
G40 C18 F5 1
G40 C19 F5 1
G40 C20 F5 1
G40 C21 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id G40
_pdbe_chem_comp_rdkit_properties.exactmw 707.372
_pdbe_chem_comp_rdkit_properties.amw 707.938
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 50
_pdbe_chem_comp_rdkit_properties.NumAtoms 103
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.474
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 374.480
_pdbe_chem_comp_rdkit_properties.tpsa 149.100
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.560
_pdbe_chem_comp_rdkit_properties.CrippenMR 195.020
_pdbe_chem_comp_rdkit_properties.chi0v 24.910
_pdbe_chem_comp_rdkit_properties.chi1v 13.116
_pdbe_chem_comp_rdkit_properties.chi2v 5.397
_pdbe_chem_comp_rdkit_properties.chi3v 5.397
_pdbe_chem_comp_rdkit_properties.chi4v 3.294
_pdbe_chem_comp_rdkit_properties.chi0n 77.094
_pdbe_chem_comp_rdkit_properties.chi1n 38.497
_pdbe_chem_comp_rdkit_properties.chi2n 4.887
_pdbe_chem_comp_rdkit_properties.chi3n 4.887
_pdbe_chem_comp_rdkit_properties.chi4n 2.835
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.260
_pdbe_chem_comp_rdkit_properties.kappa1 9.022
_pdbe_chem_comp_rdkit_properties.kappa2 17.599
_pdbe_chem_comp_rdkit_properties.kappa3 11.671
_pdbe_chem_comp_rdkit_properties.Phi 3.175
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
G40 UniChem ZINC ZINC000098208920
G40 UniChem PubChem 54579904
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
G40 C1 -1.617 0.061 -0.338 ETKDGv3 1
G40 C2 -2.970 0.017 0.368 ETKDGv3 2
G40 O3 -3.050 -0.455 1.536 ETKDGv3 3
G40 N4 -4.168 0.420 -0.322 ETKDGv3 4
G40 C5 -5.514 0.268 0.248 ETKDGv3 5
G40 C6 -6.083 1.642 0.746 ETKDGv3 6
G40 C7 -7.471 1.436 1.393 ETKDGv3 7
G40 C8 -5.139 2.232 1.817 ETKDGv3 8
G40 C9 -8.218 -2.107 -1.272 ETKDGv3 9
G40 N10 -7.319 -1.445 -0.335 ETKDGv3 10
G40 C11 -6.412 -0.419 -0.760 ETKDGv3 11
G40 O12 -6.375 -0.077 -1.974 ETKDGv3 12
G40 C13 -6.218 2.664 -0.406 ETKDGv3 13
G40 C15 -1.345 -1.318 -1.000 ETKDGv3 14
G40 C16 -2.482 -1.792 -1.876 ETKDGv3 15
G40 C17 -2.624 -1.330 -3.132 ETKDGv3 16
G40 C18 -3.770 -1.764 -3.960 ETKDGv3 17
G40 C19 -4.673 -2.617 -3.462 ETKDGv3 18
G40 C20 -4.527 -3.126 -2.084 ETKDGv3 19
G40 C21 -3.491 -2.736 -1.331 ETKDGv3 20
G40 O22 -1.642 1.045 -1.345 ETKDGv3 21
G40 C23 -0.501 0.404 0.702 ETKDGv3 22
G40 C24 0.952 0.390 0.183 ETKDGv3 23
G40 C25 1.239 1.465 -0.892 ETKDGv3 24
G40 N26 2.674 1.728 -1.149 ETKDGv3 25
G40 C27 3.281 2.816 -0.356 ETKDGv3 26
G40 C28 3.347 2.530 1.125 ETKDGv3 27
G40 C29 4.384 1.854 1.648 ETKDGv3 28
G40 C30 4.425 1.544 3.090 ETKDGv3 29
G40 C31 3.429 1.945 3.906 ETKDGv3 30
G40 C32 2.297 2.714 3.328 ETKDGv3 31
G40 C33 2.261 2.995 2.020 ETKDGv3 32
G40 C35 4.191 -2.328 -2.800 ETKDGv3 33
G40 C36 8.011 -0.058 1.644 ETKDGv3 34
G40 O37 7.002 -0.822 0.996 ETKDGv3 35
G40 C38 6.633 -0.610 -0.335 ETKDGv3 36
G40 O39 7.221 0.265 -1.030 ETKDGv3 37
G40 N40 5.567 -1.384 -0.897 ETKDGv3 38
G40 C41 5.029 -1.121 -2.241 ETKDGv3 39
G40 C42 4.250 0.177 -2.236 ETKDGv3 40
G40 N43 3.457 0.556 -1.105 ETKDGv3 41
G40 O44 4.285 0.924 -3.251 ETKDGv3 42
G40 C45 2.869 -2.533 -2.025 ETKDGv3 43
G40 C46 5.027 -3.627 -2.723 ETKDGv3 44
G40 C47 3.847 -2.080 -4.288 ETKDGv3 45
G40 S54 4.138 1.113 7.764 ETKDGv3 46
G40 C55 4.559 1.474 6.076 ETKDGv3 47
G40 C56 3.440 1.620 5.355 ETKDGv3 48
G40 C57 2.196 1.444 6.150 ETKDGv3 49
G40 C58 2.395 1.171 7.437 ETKDGv3 50
G40 H151 -0.429 -1.264 -1.626 ETKDGv3 51
G40 H152 -1.150 -2.078 -0.212 ETKDGv3 52
G40 H22 -1.826 1.921 -0.913 ETKDGv3 53
G40 H231 -0.544 -0.332 1.535 ETKDGv3 54
G40 H232 -0.708 1.399 1.153 ETKDGv3 55
G40 H4 -4.081 0.836 -1.276 ETKDGv3 56
G40 H5 -5.455 -0.408 1.129 ETKDGv3 57
G40 H71C -8.213 1.082 0.646 ETKDGv3 58
G40 H72C -7.415 0.688 2.213 ETKDGv3 59
G40 H73C -7.853 2.389 1.819 ETKDGv3 60
G40 H81C -4.143 2.467 1.386 ETKDGv3 61
G40 H82C -5.555 3.174 2.235 ETKDGv3 62
G40 H83C -5.000 1.515 2.655 ETKDGv3 63
G40 H131 -5.238 2.856 -0.890 ETKDGv3 64
G40 H132 -6.597 3.635 -0.019 ETKDGv3 65
G40 H133 -6.934 2.310 -1.176 ETKDGv3 66
G40 H91C -8.897 -1.360 -1.733 ETKDGv3 67
G40 H92C -7.630 -2.614 -2.065 ETKDGv3 68
G40 H93C -8.828 -2.865 -0.737 ETKDGv3 69
G40 H10 -7.349 -1.725 0.671 ETKDGv3 70
G40 H17 -1.910 -0.630 -3.548 ETKDGv3 71
G40 H21 -3.397 -3.106 -0.318 ETKDGv3 72
G40 H18 -3.877 -1.386 -4.968 ETKDGv3 73
G40 H19 -5.515 -2.931 -4.065 ETKDGv3 74
G40 H20 -5.263 -3.810 -1.682 ETKDGv3 75
G40 H241 1.205 -0.617 -0.203 ETKDGv3 76
G40 H242 1.606 0.549 1.061 ETKDGv3 77
G40 H251 0.793 1.123 -1.849 ETKDGv3 78
G40 H252 0.725 2.414 -0.622 ETKDGv3 79
G40 H271 4.304 3.016 -0.742 ETKDGv3 80
G40 H272 2.712 3.756 -0.527 ETKDGv3 81
G40 H43 3.521 -0.007 -0.228 ETKDGv3 82
G40 H29 5.195 1.516 1.016 ETKDGv3 83
G40 H33 1.429 3.558 1.617 ETKDGv3 84
G40 H30 5.258 0.963 3.464 ETKDGv3 85
G40 H32 1.497 3.073 3.963 ETKDGv3 86
G40 H41 5.899 -0.986 -2.924 ETKDGv3 87
G40 H451 3.045 -2.682 -0.940 ETKDGv3 88
G40 H452 2.194 -1.662 -2.157 ETKDGv3 89
G40 H453 2.330 -3.428 -2.405 ETKDGv3 90
G40 H461 4.489 -4.471 -3.207 ETKDGv3 91
G40 H462 6.001 -3.496 -3.240 ETKDGv3 92
G40 H463 5.225 -3.921 -1.671 ETKDGv3 93
G40 H471 3.313 -2.954 -4.720 ETKDGv3 94
G40 H472 4.770 -1.909 -4.883 ETKDGv3 95
G40 H473 3.185 -1.195 -4.404 ETKDGv3 96
G40 H361 8.117 -0.407 2.691 ETKDGv3 97
G40 H362 8.982 -0.189 1.120 ETKDGv3 98
G40 H363 7.729 1.016 1.650 ETKDGv3 99
G40 H40 5.108 -2.080 -0.269 ETKDGv3 100
G40 H55 5.568 1.585 5.702 ETKDGv3 101
G40 H58 1.608 1.004 8.160 ETKDGv3 102
G40 H57 1.202 1.508 5.728 ETKDGv3 103
#