Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : F5Q    

Bonds between two atoms of the molecule

Total Number of Bonds: 78


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C26 N3 C N sing 1.47 N N
2 C24 N3 C N sing 1.47 N N
3 C24 C25 C C sing 1.53 N N
4 C21 C25 C C sing 1.53 N N
5 C21 C22 C C sing 1.53 N N
6 C21 C20 C C sing 1.53 N N
7 N3 C23 N C sing 1.47 N N
8 C23 C22 C C sing 1.53 N N
9 C20 C19 C C sing 1.53 N N
10 C18 C17 C C sing 1.53 N N
11 C18 C19 C C sing 1.53 N N
12 C17 C14 C C sing 1.51 N N
13 C14 C15 C C doub 1.38 N Y
14 C14 C13 C C sing 1.38 N Y
15 C15 C16 C C sing 1.38 N Y
16 C13 C12 C C doub 1.38 N Y
17 C16 C11 C C doub 1.38 N Y
18 C12 C11 C C sing 1.38 N Y
19 C11 S C S sing 1.76 N N
20 O1 S O S doub 1.42 N N
21 S O2 S O doub 1.42 N N
22 S N2 S N sing 1.66 N N
23 N2 C5 N C sing 1.4 N N
24 C27 C28 C C doub 1.37 N Y
25 C27 C4 C C sing 1.41 N Y
26 C28 C29 C C sing 1.39 N Y
27 C5 C4 C C doub 1.41 N Y
28 C5 C6 C C sing 1.38 N Y
29 C4 C3 C C sing 1.42 N Y
30 C7 N1 C N sing 1.47 N N
31 C7 C8 C C sing 1.54 N N
32 C29 N4 C N doub 1.31 N Y
33 N1 C6 N C sing 1.4 N N
34 N1 C10 N C sing 1.48 N N
35 C6 C1 C C doub 1.4 N Y
36 C3 N4 C N sing 1.34 N Y
37 C3 C2 C C doub 1.4 N Y
38 C8 C9 C C sing 1.55 N N
39 C9 C10 C C sing 1.55 N N
40 C1 C2 C C sing 1.36 N Y
41 C7 H1 C H sing 1.09 N N
42 C7 H2 C H sing 1.09 N N
43 C8 H3 C H sing 1.09 N N
44 C8 H4 C H sing 1.09 N N
45 C9 H5 C H sing 1.09 N N
46 C9 H6 C H sing 1.09 N N
47 C10 H7 C H sing 1.09 N N
48 C10 H8 C H sing 1.09 N N
49 C12 H9 C H sing 1.08 N N
50 C13 H10 C H sing 1.08 N N
51 N2 H11 N H sing 0.97 N N
52 C27 H13 C H sing 1.08 N N
53 C28 H14 C H sing 1.08 N N
54 C29 H15 C H sing 1.08 N N
55 C2 H16 C H sing 1.08 N N
56 C1 H17 C H sing 1.08 N N
57 C16 H18 C H sing 1.08 N N
58 C15 H19 C H sing 1.08 N N
59 C17 H20 C H sing 1.09 N N
60 C17 H21 C H sing 1.09 N N
61 C18 H22 C H sing 1.09 N N
62 C18 H23 C H sing 1.09 N N
63 C19 H24 C H sing 1.09 N N
64 C19 H25 C H sing 1.09 N N
65 C20 H26 C H sing 1.09 N N
66 C20 H27 C H sing 1.09 N N
67 C21 H28 C H sing 1.09 N N
68 C25 H29 C H sing 1.09 N N
69 C25 H30 C H sing 1.09 N N
70 C24 H31 C H sing 1.09 N N
71 C24 H32 C H sing 1.09 N N
72 C26 H33 C H sing 1.09 N N
73 C26 H34 C H sing 1.09 N N
74 C26 H35 C H sing 1.09 N N
75 C23 H36 C H sing 1.09 N N
76 C23 H37 C H sing 1.09 N N
77 C22 H38 C H sing 1.09 N N
78 C22 H39 C H sing 1.09 N N