Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DY1    

Bonds between two atoms of the molecule

Total Number of Bonds: 60


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C22 C21 C C sing 1.53 N N
2 C22 C6 C C sing 1.51 N N
3 C21 C20 C C sing 1.53 N N
4 F3 C1 F C sing 1.35 N N
5 C C1 C C doub 1.38 N Y
6 C C5 C C sing 1.4 N Y
7 C1 C2 C C sing 1.39 N Y
8 C6 C5 C C sing 1.46 N Y
9 C6 C7 C C doub 1.35 N Y
10 C5 C4 C C doub 1.41 N Y
11 C20 C17 C C sing 1.53 N N
12 O1 C19 O C doub 1.21 N N
13 C2 C3 C C doub 1.38 N Y
14 C7 C17 C C sing 1.51 N N
15 C7 N C N sing 1.37 N Y
16 C17 C18 C C sing 1.53 N N
17 C18 C19 C C sing 1.51 N N
18 C4 C3 C C sing 1.39 N Y
19 C4 N C N sing 1.38 N Y
20 C19 O C O sing 1.34 N N
21 C3 S C S sing 1.76 N N
22 N C8 N C sing 1.47 N N
23 C11 C12 C C doub 1.38 N Y
24 C11 C10 C C sing 1.38 N Y
25 C12 C13 C C sing 1.38 N Y
26 F2 C16 F C sing 1.4 N N
27 C8 C10 C C sing 1.51 N N
28 C8 C9 C C sing 1.53 N N
29 S C23 S C sing 1.81 N N
30 S O2 S O doub 1.42 N N
31 S O3 S O doub 1.42 N N
32 C10 C15 C C doub 1.38 N Y
33 C13 C16 C C sing 1.51 N N
34 C13 C14 C C doub 1.38 N Y
35 C16 F1 C F sing 1.4 N N
36 C16 F C F sing 1.4 N N
37 C15 C14 C C sing 1.38 N Y
38 C2 H1 C H sing 1.08 N N
39 C9 H2 C H sing 1.09 N N
40 C9 H3 C H sing 1.09 N N
41 C9 H4 C H sing 1.09 N N
42 C11 H5 C H sing 1.08 N N
43 C12 H6 C H sing 1.08 N N
44 C15 H7 C H sing 1.08 N N
45 C18 H8 C H sing 1.09 N N
46 C18 H9 C H sing 1.09 N N
47 C20 H10 C H sing 1.09 N N
48 C20 H11 C H sing 1.09 N N
49 C21 H12 C H sing 1.09 N N
50 C21 H13 C H sing 1.09 N N
51 C22 H14 C H sing 1.09 N N
52 C22 H15 C H sing 1.09 N N
53 C23 H16 C H sing 1.09 N N
54 C23 H17 C H sing 1.09 N N
55 C23 H18 C H sing 1.09 N N
56 C8 H19 C H sing 1.09 N N
57 C14 H20 C H sing 1.08 N N
58 C17 H21 C H sing 1.09 N N
59 O H22 O H sing 0.97 N N
60 C H23 C H sing 1.08 N N