Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DGX    

Bonds between two atoms of the molecule

Total Number of Bonds: 126


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.53 N N
2 C1 C10 C C sing 1.53 N N
3 C2 C3 C C sing 1.53 N N
4 C3 O3 C O sing 1.43 N N
5 C3 C4 C C sing 1.53 N N
6 O3 C1X O C sing 1.43 N N
7 C4 C5 C C sing 1.53 N N
8 C5 C6 C C sing 1.53 N N
9 C5 C10 C C sing 1.53 N N
10 C6 C7 C C sing 1.53 N N
11 C7 C8 C C sing 1.53 N N
12 C8 C9 C C sing 1.53 N N
13 C8 C14 C C sing 1.51 N N
14 C9 C10 C C sing 1.53 N N
15 C9 C11 C C sing 1.53 N N
16 C10 C19 C C sing 1.53 N N
17 C11 C12 C C sing 1.53 N N
18 C12 O12 C O sing 1.43 N N
19 C12 C13 C C sing 1.53 N N
20 C13 C14 C C sing 1.54 N N
21 C13 C17 C C sing 1.55 N N
22 C13 C18 C C sing 1.53 N N
23 C14 O14 C O sing 1.43 N N
24 C14 C15 C C sing 1.54 N N
25 C15 C16 C C sing 1.55 N N
26 C16 C17 C C sing 1.54 N N
27 C17 C20 C C sing 1.51 N N
28 C1X C2X C C sing 1.53 N N
29 C1X O5X C O sing 1.43 N N
30 C1Y C2Y C C sing 1.53 N N
31 C1Y O4X C O sing 1.43 N N
32 C1Y O5Y C O sing 1.43 N N
33 C1Z C2Z C C sing 1.53 N N
34 C1Z O4Y C O sing 1.43 N N
35 C1Z O5Z C O sing 1.43 N N
36 C20 C21 C C sing 1.51 N N
37 C20 C22 C C doub 1.33 N N
38 C21 O21 C O sing 1.45 N N
39 O21 C23 O C sing 1.35 N N
40 C22 C23 C C sing 1.46 N N
41 C23 O23 C O doub 1.22 N N
42 C2X C3X C C sing 1.53 N N
43 C2Y C3Y C C sing 1.53 N N
44 C2Z C3Z C C sing 1.53 N N
45 C3X O3X C O sing 1.43 N N
46 C3X C4X C C sing 1.53 N N
47 C3Y O3Y C O sing 1.43 N N
48 C3Y C4Y C C sing 1.53 N N
49 C3Z O3Z C O sing 1.43 N N
50 C3Z C4Z C C sing 1.53 N N
51 C4X O4X C O sing 1.43 N N
52 C4X C5X C C sing 1.53 N N
53 C4Y O4Y C O sing 1.43 N N
54 C4Y C5Y C C sing 1.53 N N
55 C4Z O4Z C O sing 1.43 N N
56 C4Z C5Z C C sing 1.53 N N
57 C5X O5X C O sing 1.43 N N
58 C5X C6X C C sing 1.53 N N
59 C5Y O5Y C O sing 1.43 N N
60 C5Y C6Y C C sing 1.53 N N
61 C5Z O5Z C O sing 1.43 N N
62 C5Z C6Z C C sing 1.53 N N
63 C1 H1 C H sing 1.09 N N
64 C1 H1A C H sing 1.09 N N
65 C2 H2 C H sing 1.09 N N
66 C2 H2A C H sing 1.09 N N
67 C3 H3 C H sing 1.09 N N
68 C4 H4 C H sing 1.09 N N
69 C4 H4A C H sing 1.09 N N
70 C5 H5 C H sing 1.09 N N
71 C6 H6 C H sing 1.09 N N
72 C6 H6A C H sing 1.09 N N
73 C7 H7 C H sing 1.09 N N
74 C7 H7A C H sing 1.09 N N
75 C8 H8 C H sing 1.09 N N
76 C9 H9 C H sing 1.09 N N
77 C11 H11 C H sing 1.09 N N
78 C11 H11A C H sing 1.09 N N
79 C12 H12 C H sing 1.09 N N
80 O12 HO12 O H sing 0.97 N N
81 O14 HO14 O H sing 0.97 N N
82 C15 H15 C H sing 1.09 N N
83 C15 H15A C H sing 1.09 N N
84 C16 H16 C H sing 1.09 N N
85 C16 H16A C H sing 1.09 N N
86 C17 H17 C H sing 1.09 N N
87 C18 H18 C H sing 1.09 N N
88 C18 H18A C H sing 1.09 N N
89 C18 H18B C H sing 1.09 N N
90 C19 H19 C H sing 1.09 N N
91 C19 H19A C H sing 1.09 N N
92 C19 H19B C H sing 1.09 N N
93 C1X H1X C H sing 1.09 N N
94 C1Y H1Y C H sing 1.09 N N
95 C1Z H1Z C H sing 1.09 N N
96 C21 H21 C H sing 1.09 N N
97 C21 H21A C H sing 1.09 N N
98 C22 H22 C H sing 1.08 N N
99 C2X H2X C H sing 1.09 N N
100 C2X H2XA C H sing 1.09 N N
101 C2Y H2Y C H sing 1.09 N N
102 C2Y H2YA C H sing 1.09 N N
103 C2Z H2Z C H sing 1.09 N N
104 C2Z H2ZA C H sing 1.09 N N
105 C3X H3X C H sing 1.09 N N
106 O3X HO3X O H sing 0.97 N N
107 C3Y H3Y C H sing 1.09 N N
108 O3Y HO3Y O H sing 0.97 N N
109 C3Z H3Z C H sing 1.09 N N
110 O3Z HO3Z O H sing 0.97 N N
111 C4X H4X C H sing 1.09 N N
112 C4Y H4Y C H sing 1.09 N N
113 C4Z H4Z C H sing 1.09 N N
114 O4Z HO4Z O H sing 0.97 N N
115 C5X H5X C H sing 1.09 N N
116 C5Y H5Y C H sing 1.09 N N
117 C5Z H5Z C H sing 1.09 N N
118 C6X H6X C H sing 1.09 N N
119 C6X H6XA C H sing 1.09 N N
120 C6X H6XB C H sing 1.09 N N
121 C6Y H6Y C H sing 1.09 N N
122 C6Y H6YA C H sing 1.09 N N
123 C6Y H6YB C H sing 1.09 N N
124 C6Z H6Z C H sing 1.09 N N
125 C6Z H6ZA C H sing 1.09 N N
126 C6Z H6ZB C H sing 1.09 N N