Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : DGX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 119


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 2.866 -0.087 -0.98
2 C2 C C2 N N N 0 2.532 -0.338 0.492
3 C3 C C3 S N N 0 2.178 0.988 1.168
4 O3 O O3 N N N 0 1.048 1.57 0.515
5 C4 C C4 N N N 0 3.37 1.943 1.071
6 C5 C C5 R N N 0 3.705 2.194 -0.4
7 C6 C C6 N N N 0 4.897 3.148 -0.497
8 C7 C C7 N N N 0 6.106 2.526 0.203
9 C8 C C8 R N N 0 6.458 1.198 -0.472
10 C9 C C9 S N N 0 5.268 0.245 -0.378
11 C10 C C10 S N N 0 4.057 0.868 -1.077
12 C11 C C11 N N N 0 5.638 -1.065 -1.082
13 C12 C C12 R N N 0 6.807 -1.706 -0.34
14 O12 O O12 N N N 0 7.121 -2.96 -0.948
15 C13 C C13 S N N 0 8.041 -0.8 -0.386
16 C14 C C14 S N N 0 7.702 0.604 0.143
17 O14 O O14 N N N 0 8.808 1.476 -0.1
18 C15 C C15 N N N 0 7.571 0.394 1.663
19 C16 C C16 N N N 0 8.71 -0.6 1.988
20 C17 C C17 R N N 0 9.031 -1.344 0.678
21 C18 C C18 N N N 0 8.656 -0.75 -1.786
22 C19 C C19 N N N 0 4.392 1.119 -2.548
23 C1X C C1X R N N 0 -0.209 1.176 1.069
24 C1Y C C1Y S N N 0 -5.113 -0.589 0.385
25 C1Z C C1Z S N N 0 -10.197 0.137 -0.733
26 C20 C C20 N N N 0 10.45 -1.06 0.257
27 C21 C C21 N N N 0 11.098 0.299 0.135
28 O21 O O21 N N N 0 12.465 0.056 -0.3
29 C22 C C22 N N N 0 11.373 -1.96 -0.074
30 C23 C C23 N N N 0 12.62 -1.276 -0.425
31 O23 O O23 N N N 0 13.645 -1.829 -0.773
32 C3X C C3X S N N 0 -2.683 1.479 0.935
33 C2X C C2X N N N 0 -1.336 1.95 0.379
34 C2Y C C2Y N N N 0 -6.275 -1.345 1.035
35 C2Z C C2Z N N N 0 -11.216 0.351 -1.856
36 O3X O O3X N N N 0 -2.756 1.781 2.33
37 C3Y C C3Y S N N 0 -7.455 -1.388 0.059
38 O3Y O O3Y N N N 0 -7.079 -2.116 -1.112
39 C3Z C C3Z S N N 0 -12.621 0.424 -1.252
40 O3Z O O3Z N N N 0 -12.71 1.552 -0.38
41 C4X C C4X S N N 0 -2.807 -0.034 0.731
42 O4X O O4X N N N 0 -4.028 -0.495 1.311
43 C4Y C C4Y S N N 0 -7.836 0.044 -0.328
44 O4Y O O4Y N N N 0 -8.889 0.013 -1.294
45 C4Z C C4Z S N N 0 -12.891 -0.859 -0.459
46 O4Z O O4Z N N N 0 -14.172 -0.771 0.169
47 C5X C C5X R N N 0 -1.623 -0.731 1.407
48 O5X O O5X N N N 0 -0.401 -0.225 0.866
49 C5Y C C5Y R N N 0 -6.614 0.746 -0.925
50 O5Y O O5Y N N N 0 -5.544 0.724 0.022
51 C5Z C C5Z R N N 0 -11.808 -1.026 0.61
52 O5Z O O5Z N N N 0 -10.523 -1.055 -0.016
53 C6X C C6X N N N 0 -1.708 -2.238 1.157
54 C6Y C C6Y N N N 0 -6.97 2.195 -1.259
55 C6Z C C6Z N N N 0 -12.036 -2.336 1.367
56 H1 H H1 N N N 0 3.118 -1.032 -1.462
57 H1A H H1A N N N 0 2.004 0.357 -1.478
58 H2 H H2 N N N 0 1.683 -1.018 0.561
59 H2A H H2A N N N 0 3.394 -0.781 0.99
60 H3 H H3 N N N 0 1.94 0.81 2.216
61 H4 H H4 N N N 0 3.118 2.888 1.553
62 H4A H H4A N N N 0 4.232 1.5 1.569
63 H5 H H5 N N N 0 2.843 2.638 -0.899
64 H6 H H6 N N N 0 5.135 3.327 -1.546
65 H6A H H6A N N N 0 4.645 4.094 -0.016
66 H7 H H7 N N N 0 6.956 3.205 0.133
67 H7A H H7A N N N 0 5.868 2.348 1.251
68 H8 H H8 N N N 0 6.662 1.391 -1.525
69 H9 H H9 N N N 0 5.031 0.056 0.669
70 H11 H H11 N N N 0 4.783 -1.741 -1.071
71 H11A H H11A N N N 0 5.929 -0.857 -2.112
72 H12 H H12 N N N 0 6.524 -1.872 0.7
73 HO12 H HO12 N N N 0 6.391 -3.595 -0.939
74 HO14 H HO14 N N N 0 8.694 2.366 0.261
75 H15 H H15 N N N 0 7.718 1.334 2.194
76 H15A H H15A N N N 0 6.601 -0.039 1.908
77 H16 H H16 N N N 0 9.59 -0.059 2.336
78 H16A H H16A N N N 0 8.382 -1.308 2.749
79 H17 H H17 N N N 0 8.887 -2.416 0.811
80 H18 H H18 N N N 0 7.896 -0.444 -2.506
81 H18A H H18A N N N 0 9.476 -0.032 -1.796
82 H18B H H18B N N N 0 9.033 -1.737 -2.053
83 H19 H H19 N N N 0 3.53 1.562 -3.046
84 H19A H H19A N N N 0 5.241 1.799 -2.617
85 H19B H H19B N N N 0 4.643 0.174 -3.03
86 H1X H H1X N N N 0 -0.22 1.394 2.137
87 H1Y H H1Y N N N 0 -4.785 -1.124 -0.506
88 H1Z H H1Z N N N 0 -10.221 0.989 -0.053
89 H21 H H21 N N N 0 10.57 0.902 -0.604
90 H21A H H21A N N N 0 11.096 0.804 1.102
91 H22 H H22 N N N 0 11.225 -3.03 -0.083
92 H2X H H2X N N N 0 -1.215 3.016 0.569
93 H2XA H H2XA N N N 0 -1.3 1.765 -0.695
94 H2Y H H2Y N N N 0 -5.961 -2.361 1.273
95 H3X H H3X N N N 0 -3.492 1.987 0.41
96 H2YA H H2YA N N N 0 -6.577 -0.833 1.949
97 H2Z H H2Z N N N 0 -10.994 1.283 -2.376
98 H2ZA H H2ZA N N N 0 -11.163 -0.48 -2.558
99 HO3X H HO3X N N N 0 -2.677 2.723 2.533
100 H3Y H H3Y N N N 0 -8.304 -1.878 0.535
101 HO3Y H HO3Y N N N 0 -6.818 -3.031 -0.94
102 H3Z H H3Z N N N 0 -13.357 0.522 -2.05
103 HO3Z H HO3Z N N N 0 -12.543 2.4 -0.815
104 H4X H H4X N N N 0 -2.802 -0.259 -0.336
105 H4Y H H4Y N N N 0 -8.171 0.583 0.558
106 H4Z H H4Z N N N 0 -12.874 -1.715 -1.133
107 HO4Z H HO4Z N N N 0 -14.408 -1.551 0.69
108 H5X H H5X N N N 0 -1.653 -0.538 2.48
109 H5Y H H5Y N N N 0 -6.305 0.228 -1.834
110 H5Z H H5Z N N N 0 -11.853 -0.19 1.308
111 H6X H H6X N N N 0 -1.591 -2.436 0.091
112 H6XA H H6XA N N N 0 -0.915 -2.743 1.709
113 H6XB H H6XB N N N 0 -2.677 -2.608 1.492
114 H6Y H H6Y N N N 0 -7.195 2.735 -0.339
115 H6YA H H6YA N N N 0 -6.128 2.67 -1.762
116 H6YB H H6YB N N N 0 -7.842 2.214 -1.913
117 H6Z H H6Z N N N 0 -11.99 -3.172 0.669
118 H6ZA H H6ZA N N N 0 -11.264 -2.455 2.128
119 H6ZB H H6ZB N N N 0 -13.016 -2.314 1.844