Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : D3J    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C3 C4 C C doub 1.38 N Y
2 C3 C2 C C sing 1.38 N Y
3 F1 C2 F C sing 1.35 N N
4 C4 C7 C C sing 1.39 N Y
5 C2 C5 C C doub 1.38 N Y
6 S30 C29 S C sing 1.76 N Y
7 S30 C31 S C sing 1.76 N Y
8 C7 O8 C O sing 1.36 N N
9 C7 C6 C C doub 1.39 N Y
10 C5 C6 C C sing 1.38 N Y
11 O8 C9 O C sing 1.36 N N
12 C29 C28 C C doub 1.33 N Y
13 C9 C35 C C doub 1.39 N Y
14 C9 N10 C N sing 1.32 N Y
15 C35 C34 C C sing 1.38 N Y
16 C31 C32 C C doub 1.33 N Y
17 N10 C11 N C doub 1.32 N Y
18 C34 C33 C C doub 1.39 N Y
19 C28 C32 C C sing 1.38 N Y
20 C28 C12 C C sing 1.51 N N
21 C11 C33 C C sing 1.38 N Y
22 C11 C12 C C sing 1.51 N N
23 C12 C26 C C sing 1.52 N N
24 C12 N13 C N sing 1.46 N N
25 C26 C24 C C sing 1.51 N N
26 N13 C14 N C sing 1.35 N N
27 C24 O25 C O sing 1.35 N N
28 C24 C15 C C doub 1.35 N N
29 C21 C22 C C doub 1.38 N Y
30 C21 C20 C C sing 1.38 N Y
31 C22 C17 C C sing 1.39 N Y
32 C14 C15 C C sing 1.47 N N
33 C14 O27 C O doub 1.22 N N
34 C15 S16 C S sing 1.76 N N
35 C20 C19 C C doub 1.38 N Y
36 C17 S16 C S sing 1.76 N N
37 C17 C18 C C doub 1.39 N Y
38 C19 C18 C C sing 1.38 N Y
39 C18 CL23 C CL sing 1.74 N N
40 C4 H1 C H sing 1.08 N N
41 C5 H2 C H sing 1.08 N N
42 C6 H3 C H sing 1.08 N N
43 C3 H4 C H sing 1.08 N N
44 N13 H5 N H sing 0.97 N N
45 C19 H6 C H sing 1.08 N N
46 C20 H7 C H sing 1.08 N N
47 C21 H8 C H sing 1.08 N N
48 C22 H9 C H sing 1.08 N N
49 O25 H10 O H sing 0.97 N N
50 C26 H11 C H sing 1.09 N N
51 C26 H12 C H sing 1.09 N N
52 C29 H13 C H sing 1.08 N N
53 C31 H14 C H sing 1.08 N N
54 C32 H15 C H sing 1.08 N N
55 C33 H16 C H sing 1.08 N N
56 C34 H17 C H sing 1.08 N N
57 C35 H18 C H sing 1.08 N N