Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : CM7    

Bonds between two atoms of the molecule

Total Number of Bonds: 83


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C01 C02 C C sing 1.54 N N
2 C02 C03 C C sing 1.55 N N
3 C03 C04 C C doub 1.45 N Y
4 C03 C17 C C sing 1.44 N Y
5 C04 N05 C N sing 1.4 N Y
6 N05 C06 N C sing 1.51 N N
7 N05 C18 N C sing 1.46 N Y
8 C06 C07 C C sing 1.54 N N
9 C07 S08 C S sing 1.85 N N
10 S08 O09 S O doub 1.49 N N
11 S08 O10 S O doub 1.44 N N
12 S08 N11 S N sing 1.56 N N
13 N11 C12 N C sing 1.48 N N
14 N11 C13 N C sing 1.47 N N
15 C13 C14 C C sing 1.43 N Y
16 C13 C18 C C doub 1.48 N Y
17 C14 C15 C C doub 1.41 N Y
18 C15 C16 C C sing 1.47 N Y
19 C15 C19 C C sing 1.5 N N
20 C16 C17 C C doub 1.47 N Y
21 C17 C18 C C sing 1.42 N Y
22 C19 O20 C O doub 1.21 N N
23 C19 N21 C N sing 1.43 N N
24 N21 C22 N C sing 1.45 N N
25 C22 C23 C C sing 1.56 N N
26 C22 C30 C C sing 1.54 N N
27 C23 C24 C C sing 1.55 N N
28 C24 C25 C C sing 1.46 N Y
29 C24 C29 C C doub 1.46 N Y
30 C25 C26 C C doub 1.44 N Y
31 C26 C27 C C sing 1.47 N Y
32 C27 C28 C C doub 1.45 N Y
33 C28 C29 C C sing 1.45 N Y
34 C30 O31 C O sing 1.44 N N
35 C30 C32 C C sing 1.56 N N
36 C32 N33 C N sing 1.5 N N
37 N33 C34 N C sing 1.49 N N
38 C34 C35 C C sing 1.55 N N
39 C35 C36 C C sing 1.46 N Y
40 C35 C40 C C doub 1.45 N Y
41 C36 C37 C C doub 1.45 N Y
42 C37 C38 C C sing 1.46 N Y
43 C38 C39 C C doub 1.45 N Y
44 C39 C40 C C sing 1.45 N Y
45 C39 C41 C C sing 1.53 N N
46 C41 F42 C F sing 1.35 N N
47 C41 F43 C F sing 1.35 N N
48 C41 F44 C F sing 1.35 N N
49 C01 H011 C H sing 1.1 N N
50 C01 H012 C H sing 1.1 N N
51 C01 H013 C H sing 1.1 N N
52 C02 H021 C H sing 1.1 N N
53 C02 H022 C H sing 1.1 N N
54 C04 H04 C H sing 1.08 N N
55 C06 H061 C H sing 1.1 N N
56 C06 H062 C H sing 1.1 N N
57 C07 H071 C H sing 1.1 N N
58 C07 H072 C H sing 1.1 N N
59 C12 H121 C H sing 1.1 N N
60 C12 H122 C H sing 1.1 N N
61 C12 H123 C H sing 1.1 N N
62 C14 H14 C H sing 1.08 N N
63 C16 H16 C H sing 1.08 N N
64 N21 H21 N H sing 1.0 N N
65 C22 H22 C H sing 1.1 N N
66 C23 H231 C H sing 1.1 N N
67 C23 H232 C H sing 1.1 N N
68 C30 H30 C H sing 1.1 N N
69 C25 H25 C H sing 1.08 N N
70 C29 H29 C H sing 1.08 N N
71 C26 H26 C H sing 1.08 N N
72 C27 H27 C H sing 1.08 N N
73 C28 H28 C H sing 1.08 N N
74 O31 H31 O H sing 0.95 N N
75 C32 H321 C H sing 1.1 N N
76 C32 H322 C H sing 1.1 N N
77 N33 H33 N H sing 1.0 N N
78 C34 H341 C H sing 1.1 N N
79 C34 H342 C H sing 1.1 N N
80 C36 H36 C H sing 1.08 N N
81 C40 H40 C H sing 1.08 N N
82 C37 H37 C H sing 1.08 N N
83 C38 H38 C H sing 1.08 N N